Wall clock time and date at job start Mon Mar 30 2020 23:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 110.65528 * 2 1 4 4 C 1.34518 * 125.78427 * 272.62782 * 3 2 1 5 5 C 1.41380 * 106.83440 * 179.89139 * 4 3 2 6 6 C 1.34518 * 106.84367 * 0.37319 * 5 4 3 7 7 O 1.34298 * 108.41923 * 359.76824 * 6 5 4 8 8 N 1.47315 * 110.59794 * 237.08486 * 2 1 3 9 9 C 1.34528 * 106.61898 * 241.25148 * 8 2 1 10 10 O 1.21539 * 123.77165 * 180.21148 * 9 8 2 11 11 N 1.33796 * 112.45360 * 0.38104 * 9 8 2 12 12 C 1.46499 * 124.17182 * 179.86146 * 11 9 8 13 13 C 1.52997 * 109.47555 * 269.70071 * 12 11 9 14 14 C 1.50694 * 109.47460 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00179 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00472 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99350 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47339 * 179.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00306 * 18 16 14 21 21 H 1.48504 * 109.46636 * 59.99865 * 18 16 14 22 22 C 1.34761 * 111.64659 * 359.60103 * 11 9 8 23 23 O 1.21238 * 127.15662 * 180.19608 * 22 11 9 24 24 H 1.09001 * 109.47192 * 297.08663 * 1 2 3 25 25 H 1.08997 * 109.47435 * 57.08729 * 1 2 3 26 26 H 1.08999 * 109.47083 * 177.09070 * 1 2 3 27 27 H 1.08001 * 126.58355 * 0.02870 * 4 3 2 28 28 H 1.08007 * 126.57566 * 180.12454 * 5 4 3 29 29 H 1.08001 * 125.78780 * 179.79553 * 6 5 4 30 30 H 0.96993 * 126.68694 * 61.51036 * 8 2 1 31 31 H 1.09003 * 109.47334 * 149.70086 * 12 11 9 32 32 H 1.08999 * 109.47608 * 29.70423 * 12 11 9 33 33 H 1.09005 * 109.46800 * 60.00640 * 13 12 11 34 34 H 1.08998 * 109.47382 * 300.00439 * 13 12 11 35 35 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0616 1.4102 0.0000 4 6 2.2923 2.1638 -1.0901 5 6 2.7812 3.4085 -0.6313 6 6 2.8280 3.3381 0.7112 7 8 2.3909 2.1254 1.0880 8 7 2.0483 -0.7493 -1.1576 9 6 2.7640 -1.7753 -0.6627 10 8 3.3370 -2.5947 -1.3536 11 7 2.7715 -1.7948 0.6751 12 6 3.4687 -2.8013 1.4795 13 6 2.5253 -3.9726 1.7605 14 6 3.2422 -5.0077 2.5884 15 1 4.2684 -4.8465 2.8843 16 6 2.5886 -6.1610 2.9674 17 7 1.3393 -6.3575 2.6067 18 14 3.4776 -7.4445 3.9931 19 1 2.5619 -8.5811 4.2659 20 1 4.6674 -7.9336 3.2514 21 1 3.9100 -6.8384 5.2780 22 6 2.0633 -0.7710 1.1912 23 8 1.8885 -0.5193 2.3642 24 1 -0.3633 0.4679 0.9150 25 1 -0.3634 0.5584 -0.8627 26 1 -0.3633 -1.0263 -0.0522 27 1 2.1323 1.8745 -2.1183 28 1 3.0667 4.2525 -1.2419 29 1 3.1602 4.1237 1.3736 30 1 1.9049 -0.5411 -2.0940 31 1 3.7865 -2.3565 2.4225 32 1 4.3418 -3.1607 0.9349 33 1 2.2076 -4.4175 0.8174 34 1 1.6521 -3.6133 2.3051 35 1 0.8795 -7.1691 2.8730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019509622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:40:03 Heat of formation + Delta-G solvation = -24.082233 kcal Electronic energy + Delta-G solvation = -21761.256469 eV Core-core repulsion = 18341.334838 eV Total energy + Delta-G solvation = -3419.921631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.07020 -41.96760 -38.31457 -36.45623 -35.31053 -33.27388 -32.96077 -31.34520 -29.92544 -28.89130 -25.74711 -24.50827 -22.71193 -22.29056 -21.74126 -20.50415 -19.77325 -18.24050 -17.58667 -16.77319 -16.33294 -16.16540 -15.80654 -15.42661 -14.92225 -14.69029 -14.35731 -13.88622 -13.60753 -13.19686 -13.06098 -12.97141 -12.79957 -12.63929 -12.36226 -12.21203 -11.57606 -10.94270 -10.89252 -10.55978 -10.22310 -10.14946 -10.10131 -9.87897 -9.66674 -9.27026 -8.92535 -8.77073 -8.38514 -6.03672 -4.07506 1.39118 1.79468 2.31282 2.36110 2.74402 3.22561 3.31594 3.34695 3.38343 3.41381 4.01635 4.19481 4.45044 4.57566 4.75597 4.85656 5.25088 5.32990 5.33365 5.45035 5.54040 5.61111 5.74068 5.85675 5.98732 6.08390 6.20335 6.29390 6.63450 6.80185 6.86188 7.29272 7.55931 7.62748 7.69663 7.92639 8.26232 8.37347 8.97098 9.56502 11.08026 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031588 B = 0.004344 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.200664 B = 6444.659545 C = 6667.128889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.204 3.796 3 C -0.017 4.017 4 C -0.183 4.183 5 C -0.217 4.217 6 C -0.029 4.029 7 O -0.157 6.157 8 N -0.719 5.719 9 C 0.706 3.294 10 O -0.530 6.530 11 N -0.566 5.566 12 C 0.119 3.881 13 C 0.012 3.988 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.898 3.102 19 H -0.287 1.287 20 H -0.275 1.275 21 H -0.275 1.275 22 C 0.530 3.470 23 O -0.449 6.449 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.206 0.794 30 H 0.437 0.563 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.025 0.975 34 H 0.022 0.978 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 19.979 -7.964 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.112 3.888 3 C -0.069 4.069 4 C -0.203 4.203 5 C -0.236 4.236 6 C -0.097 4.097 7 O -0.051 6.051 8 N -0.385 5.385 9 C 0.407 3.593 10 O -0.402 6.402 11 N -0.311 5.311 12 C 0.000 4.000 13 C -0.025 4.025 14 C -0.562 4.562 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.726 3.274 19 H -0.212 1.212 20 H -0.201 1.201 21 H -0.201 1.201 22 C 0.314 3.686 23 O -0.316 6.316 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.168 0.832 28 H 0.169 0.831 29 H 0.223 0.777 30 H 0.281 0.719 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.802 19.315 -7.269 20.653 hybrid contribution 0.393 -0.391 -0.131 0.569 sum -0.409 18.925 -7.400 20.324 Atomic orbital electron populations 1.22032 0.88515 1.04833 1.04684 1.19417 0.96900 0.85673 0.86846 1.21679 1.06181 0.93710 0.85361 1.21462 1.05598 0.94170 0.99072 1.21824 1.07539 0.99455 0.94806 1.24193 1.02590 0.86647 0.96295 1.84139 1.63317 1.23604 1.34089 1.45547 1.56050 1.28784 1.08151 1.15881 0.79395 0.81787 0.82274 1.91016 1.47429 1.40805 1.60972 1.46715 1.48639 1.28236 1.07521 1.22266 0.96584 0.87891 0.93247 1.19415 0.94563 0.90887 0.97677 1.20951 0.98806 1.03050 1.33356 0.92256 1.24987 0.94887 0.98186 0.96086 1.69962 1.10460 1.26929 1.45702 0.86557 0.79451 0.80790 0.80638 1.21226 1.20080 1.20099 1.20325 0.78149 0.80771 0.89332 1.90797 1.55899 1.68881 1.16069 0.89431 0.90053 0.89774 0.83239 0.83101 0.77737 0.71902 0.89780 0.89508 0.95682 0.95965 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.97 37.16 0.33 -1.18 16 2 C 0.20 2.70 1.29 -133.24 -0.17 2.52 16 3 C -0.02 -0.21 5.96 -35.62 -0.21 -0.43 16 4 C -0.18 -1.82 10.44 -39.70 -0.41 -2.24 16 5 C -0.22 -1.93 10.91 -39.70 -0.43 -2.37 16 6 C -0.03 -0.27 12.09 29.42 0.36 0.08 16 7 O -0.16 -2.08 10.25 5.73 0.06 -2.02 16 8 N -0.72 -9.22 5.59 -54.02 -0.30 -9.52 16 9 C 0.71 12.69 8.62 -88.01 -0.76 11.93 16 10 O -0.53 -11.23 17.48 5.33 0.09 -11.14 16 11 N -0.57 -10.94 2.60 -120.73 -0.31 -11.26 16 12 C 0.12 2.60 5.64 -4.04 -0.02 2.57 16 13 C 0.01 0.33 5.30 -27.89 -0.15 0.18 16 14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 18 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 C 0.53 9.49 6.79 -10.56 -0.07 9.41 16 23 O -0.45 -9.11 17.62 5.59 0.10 -9.01 16 24 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 28 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 29 H 0.21 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.44 4.06 8.96 -40.82 -0.37 3.69 16 31 H 0.08 1.78 8.01 -51.93 -0.42 1.36 16 32 H 0.09 1.87 7.85 -51.93 -0.41 1.46 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -35.04 314.02 -5.99 -41.03 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.11 Total: -0.21 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -1.96 Total: 6.92 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.12 Total: -47.08 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.25 Total: -22.17 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.04 -5.99 -41.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019509622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.946 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds