Wall clock time and date at job start Mon Mar 30 2020 23:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 110.65528 * 2 1 4 4 C 1.34518 * 125.78427 * 272.62782 * 3 2 1 5 5 C 1.41380 * 106.83440 * 179.89139 * 4 3 2 6 6 C 1.34518 * 106.84367 * 0.37319 * 5 4 3 7 7 O 1.34298 * 108.41923 * 359.76824 * 6 5 4 8 8 N 1.47315 * 110.59794 * 237.08486 * 2 1 3 9 9 C 1.34528 * 106.61898 * 241.25148 * 8 2 1 10 10 O 1.21539 * 123.77165 * 180.21148 * 9 8 2 11 11 N 1.33796 * 112.45360 * 0.38104 * 9 8 2 12 12 C 1.46499 * 124.17182 * 179.86146 * 11 9 8 13 13 C 1.52997 * 109.47555 * 269.70071 * 12 11 9 14 14 C 1.50694 * 109.47460 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00179 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00472 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99350 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47339 * 179.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00306 * 18 16 14 21 21 H 1.48504 * 109.46636 * 59.99865 * 18 16 14 22 22 C 1.34761 * 111.64659 * 359.60103 * 11 9 8 23 23 O 1.21238 * 127.15662 * 180.19608 * 22 11 9 24 24 H 1.09001 * 109.47192 * 297.08663 * 1 2 3 25 25 H 1.08997 * 109.47435 * 57.08729 * 1 2 3 26 26 H 1.08999 * 109.47083 * 177.09070 * 1 2 3 27 27 H 1.08001 * 126.58355 * 0.02870 * 4 3 2 28 28 H 1.08007 * 126.57566 * 180.12454 * 5 4 3 29 29 H 1.08001 * 125.78780 * 179.79553 * 6 5 4 30 30 H 0.96993 * 126.68694 * 61.51036 * 8 2 1 31 31 H 1.09003 * 109.47334 * 149.70086 * 12 11 9 32 32 H 1.08999 * 109.47608 * 29.70423 * 12 11 9 33 33 H 1.09005 * 109.46800 * 60.00640 * 13 12 11 34 34 H 1.08998 * 109.47382 * 300.00439 * 13 12 11 35 35 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0616 1.4102 0.0000 4 6 2.2923 2.1638 -1.0901 5 6 2.7812 3.4085 -0.6313 6 6 2.8280 3.3381 0.7112 7 8 2.3909 2.1254 1.0880 8 7 2.0483 -0.7493 -1.1576 9 6 2.7640 -1.7753 -0.6627 10 8 3.3370 -2.5947 -1.3536 11 7 2.7715 -1.7948 0.6751 12 6 3.4687 -2.8013 1.4795 13 6 2.5253 -3.9726 1.7605 14 6 3.2422 -5.0077 2.5884 15 1 4.2684 -4.8465 2.8843 16 6 2.5886 -6.1610 2.9674 17 7 1.3393 -6.3575 2.6067 18 14 3.4776 -7.4445 3.9931 19 1 2.5619 -8.5811 4.2659 20 1 4.6674 -7.9336 3.2514 21 1 3.9100 -6.8384 5.2780 22 6 2.0633 -0.7710 1.1912 23 8 1.8885 -0.5193 2.3642 24 1 -0.3633 0.4679 0.9150 25 1 -0.3634 0.5584 -0.8627 26 1 -0.3633 -1.0263 -0.0522 27 1 2.1323 1.8745 -2.1183 28 1 3.0667 4.2525 -1.2419 29 1 3.1602 4.1237 1.3736 30 1 1.9049 -0.5411 -2.0940 31 1 3.7865 -2.3565 2.4225 32 1 4.3418 -3.1607 0.9349 33 1 2.2076 -4.4175 0.8174 34 1 1.6521 -3.6133 2.3051 35 1 0.8795 -7.1691 2.8730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019509622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:40:02 Heat of formation + Delta-G solvation = -49.309969 kcal Electronic energy + Delta-G solvation = -21762.350426 eV Core-core repulsion = 18341.334838 eV Total energy + Delta-G solvation = -3421.015588 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.08045 -43.15082 -39.80917 -37.80197 -36.96491 -35.14548 -33.92959 -32.60539 -31.72912 -29.69187 -27.57733 -25.86339 -24.16970 -23.71853 -22.79561 -21.58540 -21.15357 -19.36631 -18.91437 -18.60912 -17.73727 -17.22992 -17.01338 -16.72104 -16.56616 -16.43689 -15.76160 -15.35213 -14.96377 -14.72313 -14.36469 -14.01811 -13.76552 -13.69918 -13.54218 -13.45700 -13.14361 -12.86553 -12.78002 -12.15513 -12.13040 -12.02031 -11.50312 -11.32349 -10.95010 -10.89778 -10.63718 -10.61400 -9.56094 -8.25670 -6.38859 0.34574 0.64457 1.04545 1.40713 1.44875 1.52471 1.61657 1.71335 1.87569 2.13415 2.39714 2.78354 3.08636 3.32197 3.60060 3.88700 4.09084 4.19760 4.32811 4.36221 4.43665 4.52540 4.61502 4.67224 4.80866 4.95346 4.98832 5.07177 5.33156 5.38173 5.54828 5.67831 5.70230 5.95243 6.05737 6.12060 6.23020 6.74176 6.98032 7.30856 8.87032 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031588 B = 0.004344 C = 0.004199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.200664 B = 6444.659545 C = 6667.128889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.219 3.781 3 C -0.054 4.054 4 C -0.166 4.166 5 C -0.220 4.220 6 C -0.031 4.031 7 O -0.190 6.190 8 N -0.687 5.687 9 C 0.703 3.297 10 O -0.567 6.567 11 N -0.579 5.579 12 C 0.133 3.867 13 C 0.025 3.975 14 C -0.548 4.548 15 H 0.071 0.929 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.974 3.026 19 H -0.282 1.282 20 H -0.264 1.264 21 H -0.264 1.264 22 C 0.519 3.481 23 O -0.481 6.481 24 H 0.085 0.915 25 H 0.121 0.879 26 H 0.073 0.927 27 H 0.176 0.824 28 H 0.181 0.819 29 H 0.237 0.763 30 H 0.456 0.544 31 H 0.089 0.911 32 H 0.090 0.910 33 H -0.007 1.007 34 H -0.008 1.008 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.367 21.737 -8.808 23.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.128 3.872 3 C -0.105 4.105 4 C -0.185 4.185 5 C -0.239 4.239 6 C -0.099 4.099 7 O -0.086 6.086 8 N -0.355 5.355 9 C 0.404 3.596 10 O -0.443 6.443 11 N -0.323 5.323 12 C 0.013 3.987 13 C -0.013 4.013 14 C -0.586 4.586 15 H 0.089 0.911 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.797 3.203 19 H -0.207 1.207 20 H -0.189 1.189 21 H -0.189 1.189 22 C 0.306 3.694 23 O -0.351 6.351 24 H 0.104 0.896 25 H 0.139 0.861 26 H 0.092 0.908 27 H 0.194 0.806 28 H 0.198 0.802 29 H 0.254 0.746 30 H 0.305 0.695 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.011 0.989 34 H 0.010 0.990 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.274 21.135 -8.160 22.658 hybrid contribution 0.200 -0.814 0.123 0.848 sum -0.073 20.321 -8.037 21.853 Atomic orbital electron populations 1.22113 0.86349 1.04889 1.06481 1.19355 0.98180 0.85790 0.83882 1.21481 1.09407 0.93367 0.86219 1.21865 1.03197 0.93947 0.99510 1.22229 1.06931 0.99881 0.94822 1.25006 1.01286 0.85960 0.97608 1.84114 1.64288 1.25107 1.35098 1.45322 1.54069 1.26938 1.09179 1.15972 0.79610 0.82427 0.81574 1.90987 1.49294 1.42532 1.61472 1.46705 1.49069 1.28272 1.08289 1.21805 0.95583 0.87213 0.94146 1.19175 0.94388 0.92345 0.95394 1.21425 0.99561 1.03854 1.33746 0.91122 1.26024 0.95663 1.00639 0.97261 1.70105 1.12225 1.27789 1.46934 0.85368 0.78301 0.77593 0.79006 1.20680 1.18909 1.18877 1.21197 0.77293 0.80504 0.90386 1.90760 1.56877 1.69640 1.17833 0.89583 0.86063 0.90810 0.80646 0.80211 0.74640 0.69489 0.89302 0.89205 0.98868 0.98953 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.97 71.98 0.65 -2.15 16 2 C 0.22 5.61 1.29 2.24 0.00 5.61 16 3 C -0.05 -1.23 5.96 24.84 0.15 -1.08 16 4 C -0.17 -2.73 10.44 22.19 0.23 -2.50 16 5 C -0.22 -3.11 10.91 22.19 0.24 -2.87 16 6 C -0.03 -0.51 12.09 66.97 0.81 0.30 16 7 O -0.19 -4.80 10.25 -2.40 -0.02 -4.83 16 8 N -0.69 -16.77 5.59 -443.23 -2.48 -19.25 16 9 C 0.70 25.55 8.62 179.44 1.55 27.10 16 10 O -0.57 -24.50 17.48 -3.84 -0.07 -24.57 16 11 N -0.58 -23.09 2.60 -773.13 -2.01 -25.11 16 12 C 0.13 6.05 5.64 86.38 0.49 6.53 16 13 C 0.02 1.39 5.30 29.85 0.16 1.55 16 14 C -0.55 -32.00 9.11 25.60 0.23 -31.77 16 15 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 16 C 0.00 0.15 5.46 84.66 0.46 0.62 16 17 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 18 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 22 C 0.52 19.06 6.79 87.94 0.60 19.66 16 23 O -0.48 -20.34 17.62 -2.90 -0.05 -20.39 16 24 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 28 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 29 H 0.24 1.91 8.06 -2.91 -0.02 1.88 16 30 H 0.46 7.34 8.96 -92.71 -0.83 6.51 16 31 H 0.09 3.91 8.01 -2.39 -0.02 3.89 16 32 H 0.09 4.00 7.85 -2.39 -0.02 3.98 16 33 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 34 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -79.35 314.02 3.53 -75.81 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.29 Total: 8.03 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: 5.56 Total: 20.99 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -4.20 Total: -102.01 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -0.14 Total: -49.78 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -79.35 3.53 -75.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019509622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.501 kcal (2) G-P(sol) polarization free energy of solvation -79.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds