Wall clock time and date at job start Tue Mar 31 2020 01:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21310 * 119.99685 * 2 1 4 4 C 1.46756 * 120.00222 * 180.02562 * 2 1 3 5 5 C 1.40125 * 120.09191 * 359.97270 * 4 2 1 6 6 C 1.36535 * 119.90143 * 179.76177 * 5 4 2 7 7 C 1.39328 * 120.09131 * 0.52208 * 6 5 4 8 8 N 1.38895 * 119.90500 * 179.76183 * 7 6 5 9 9 C 1.46901 * 110.99635 * 295.76674 * 8 7 6 10 10 C 1.46896 * 110.99969 * 59.71941 * 8 7 6 11 11 C 1.50699 * 109.47090 * 170.00409 * 10 8 7 12 12 H 1.07998 * 120.00144 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00178 * 179.97438 * 11 10 8 14 14 N 1.31511 * 119.99937 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00136 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47190 * 60.00098 * 15 13 11 17 17 H 1.48497 * 109.47185 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47062 * 300.00630 * 15 13 11 19 19 C 1.39293 * 120.19340 * 359.47621 * 7 6 5 20 20 N 1.48016 * 119.95226 * 180.23364 * 19 7 6 21 21 O 1.21804 * 119.99891 * 180.02562 * 20 19 7 22 22 O 1.21799 * 120.00179 * 0.02562 * 20 19 7 23 23 C 1.36559 * 120.09766 * 0.26012 * 19 7 6 24 24 H 1.09004 * 109.47108 * 269.99674 * 1 2 3 25 25 H 1.08994 * 109.47290 * 29.99959 * 1 2 3 26 26 H 1.09001 * 109.47075 * 150.00345 * 1 2 3 27 27 H 1.08004 * 120.05592 * 0.04981 * 5 4 2 28 28 H 1.07996 * 119.95062 * 180.25852 * 6 5 4 29 29 H 1.09009 * 109.47037 * 59.99564 * 9 8 7 30 30 H 1.08992 * 109.47254 * 179.97438 * 9 8 7 31 31 H 1.09004 * 109.47303 * 299.99936 * 9 8 7 32 32 H 1.09003 * 109.47282 * 290.00202 * 10 8 7 33 33 H 1.09001 * 109.47321 * 50.00235 * 10 8 7 34 34 H 0.96997 * 119.99980 * 179.97438 * 14 13 11 35 35 H 1.07999 * 120.05404 * 179.97438 * 23 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2408 -1.2709 -0.0006 5 6 1.5422 -2.4856 -0.0005 6 6 2.2288 -3.6657 -0.0060 7 6 3.6221 -3.6633 -0.0006 8 7 4.3167 -4.8661 -0.0012 9 6 4.0588 -5.6234 1.2309 10 6 3.9857 -5.6645 -1.1889 11 6 4.9279 -6.8367 -1.2847 12 1 5.6956 -6.9750 -0.5378 13 6 4.8093 -7.7333 -2.3255 14 7 3.8742 -7.5653 -3.2348 15 14 5.9777 -9.1859 -2.4447 16 1 5.8460 -10.0282 -1.2287 17 1 5.6431 -9.9931 -3.6453 18 1 7.3734 -8.6907 -2.5549 19 6 4.3205 -2.4581 -0.0006 20 7 5.8007 -2.4618 -0.0001 21 8 6.4123 -1.4084 0.0003 22 8 6.4071 -3.5181 -0.0001 23 6 3.6417 -1.2732 -0.0006 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4621 -2.4884 -0.0009 28 1 1.6912 -4.6023 -0.0102 29 1 2.9925 -5.8354 1.3107 30 1 4.6143 -6.5607 1.2042 31 1 4.3778 -5.0360 2.0920 32 1 2.9610 -6.0277 -1.1087 33 1 4.0831 -5.0461 -2.0812 34 1 3.7910 -8.1958 -3.9672 35 1 4.1839 -0.3392 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019871118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:13 Heat of formation + Delta-G solvation = 6.924111 kcal Electronic energy + Delta-G solvation = -21512.914866 eV Core-core repulsion = 18094.337771 eV Total energy + Delta-G solvation = -3418.577095 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.71582 -40.29399 -39.00229 -36.52486 -35.73053 -32.86409 -32.42429 -30.97597 -29.54804 -27.49203 -26.29504 -25.33440 -23.47134 -22.49016 -21.18425 -20.29113 -18.34294 -17.99277 -16.95982 -16.86010 -16.50508 -16.04820 -15.68810 -15.29811 -14.86350 -14.63863 -14.34699 -13.92970 -13.51395 -12.89928 -12.80646 -12.76432 -12.33030 -12.15384 -11.92765 -11.52564 -11.11385 -10.93608 -10.86001 -10.73994 -10.61895 -10.45463 -10.16042 -10.07523 -9.70316 -9.48686 -8.99224 -8.57683 -7.79530 -6.16238 -4.18034 0.06643 0.43526 1.61504 1.87000 2.13322 3.29647 3.33755 3.34011 3.38468 3.70222 4.05554 4.38088 4.47100 4.55028 4.68658 4.84013 4.94332 5.06910 5.13751 5.21115 5.42022 5.46950 5.66860 5.76922 5.81835 5.85730 5.96642 6.21816 6.45601 6.83119 6.88991 6.97870 7.20277 7.57089 7.64560 7.90653 8.25046 8.27450 8.88492 9.46738 10.94750 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.005001 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.550492 B = 5597.893474 C = 6317.222234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.401 3.599 3 O -0.457 6.457 4 C -0.197 4.197 5 C -0.019 4.019 6 C -0.168 4.168 7 C 0.221 3.779 8 N -0.509 5.509 9 C 0.045 3.955 10 C 0.202 3.798 11 C -0.508 4.508 12 H 0.071 0.929 13 C 0.058 3.942 14 N -0.900 5.900 15 Si 0.904 3.096 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.273 1.273 19 C -0.048 4.048 20 N 0.026 4.974 21 O -0.217 6.217 22 O -0.070 6.070 23 C 0.002 3.998 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.023 0.977 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.003 0.997 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.476 9.474 7.810 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.279 3.721 3 O -0.332 6.332 4 C -0.199 4.199 5 C -0.038 4.038 6 C -0.189 4.189 7 C 0.124 3.876 8 N -0.232 5.232 9 C -0.101 4.101 10 C 0.080 3.920 11 C -0.546 4.546 12 H 0.090 0.910 13 C -0.144 4.144 14 N -0.539 5.539 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.133 4.133 20 N 0.549 4.451 21 O -0.415 6.415 22 O -0.307 6.307 23 C -0.018 4.018 24 H 0.118 0.882 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.164 0.836 28 H 0.169 0.831 29 H 0.041 0.959 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.020 0.980 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.428 10.198 7.614 15.839 hybrid contribution 0.041 -1.110 -0.298 1.150 sum -9.387 9.088 7.316 14.974 Atomic orbital electron populations 1.22232 0.93142 1.05259 1.04965 1.22260 0.91772 0.87020 0.71010 1.90583 1.72094 1.34083 1.36461 1.20357 0.92804 0.95748 1.10947 1.21475 1.00913 0.90947 0.90445 1.21764 0.93878 1.00006 1.03242 1.19320 0.90521 0.92366 0.85431 1.59941 1.54508 1.02592 1.06116 1.22302 0.99122 0.99301 0.89354 1.19910 0.95777 0.91784 0.84482 1.21024 1.15839 1.07187 1.10584 0.91038 1.24975 0.95740 0.98366 0.95319 1.69933 1.33033 1.37397 1.13529 0.86460 0.81379 0.81691 0.77367 1.20122 1.21387 1.19826 1.20913 0.80981 0.95211 1.16163 1.43322 1.02774 1.00650 0.98387 1.94489 1.68424 1.21545 1.57034 1.94701 1.68320 1.19498 1.48215 1.20899 0.93776 0.97707 0.89374 0.88211 0.89096 0.89290 0.83580 0.83095 0.95855 0.88695 0.93208 0.97974 0.95173 0.92666 0.82345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.25 9.75 36.00 0.35 -0.90 16 2 C 0.40 4.36 7.21 -30.87 -0.22 4.13 16 3 O -0.46 -6.55 17.08 5.53 0.09 -6.45 16 4 C -0.20 -2.38 5.87 -105.05 -0.62 -3.00 16 5 C -0.02 -0.20 9.31 -39.49 -0.37 -0.57 16 6 C -0.17 -2.31 8.57 -39.79 -0.34 -2.65 16 7 C 0.22 3.87 4.66 -83.86 -0.39 3.48 16 8 N -0.51 -10.32 2.56 -180.32 -0.46 -10.78 16 9 C 0.04 0.78 9.19 60.07 0.55 1.33 16 10 C 0.20 4.87 4.29 -4.98 -0.02 4.85 16 11 C -0.51 -13.46 8.46 -34.44 -0.29 -13.75 16 12 H 0.07 1.88 7.12 -52.49 -0.37 1.51 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -25.46 13.29 55.43 0.74 -24.73 16 15 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.05 -0.85 6.83 -80.16 -0.55 -1.40 16 20 N 0.03 0.52 4.45 33.86 0.15 0.67 16 21 O -0.22 -4.34 18.42 -29.46 -0.54 -4.89 16 22 O -0.07 -1.55 17.09 -29.46 -0.50 -2.05 16 23 C 0.00 0.03 9.05 -39.49 -0.36 -0.33 16 24 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.40 6.45 -51.93 -0.34 0.06 16 27 H 0.15 0.92 6.34 -52.48 -0.33 0.58 16 28 H 0.15 1.96 7.09 -52.49 -0.37 1.58 16 29 H 0.02 0.36 7.33 -51.92 -0.38 -0.02 16 30 H 0.09 1.75 6.76 -51.93 -0.35 1.40 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.00 0.06 7.43 -51.93 -0.39 -0.32 16 33 H 0.03 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.16 2.38 7.16 -52.49 -0.38 2.00 16 LS Contribution 308.87 15.07 4.65 4.65 Total: -1.00 -31.55 308.87 -6.97 -38.52 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -3.73 Total: -3.54 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -2.35 Total: -7.33 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.42 Total: -34.84 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.95 Total: -13.39 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.55 -6.97 -38.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019871118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.447 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds