Wall clock time and date at job start Tue Mar 31 2020 01:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21310 * 119.99685 * 2 1 4 4 C 1.46756 * 120.00222 * 180.02562 * 2 1 3 5 5 C 1.40125 * 120.09191 * 359.97270 * 4 2 1 6 6 C 1.36535 * 119.90143 * 179.76177 * 5 4 2 7 7 C 1.39328 * 120.09131 * 0.52208 * 6 5 4 8 8 N 1.38895 * 119.90500 * 179.76183 * 7 6 5 9 9 C 1.46901 * 110.99635 * 295.76674 * 8 7 6 10 10 C 1.46896 * 110.99969 * 59.71941 * 8 7 6 11 11 C 1.50699 * 109.47090 * 170.00409 * 10 8 7 12 12 H 1.07998 * 120.00144 * 0.02562 * 11 10 8 13 13 C 1.37881 * 120.00178 * 179.97438 * 11 10 8 14 14 N 1.31511 * 119.99937 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00136 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47190 * 60.00098 * 15 13 11 17 17 H 1.48497 * 109.47185 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47062 * 300.00630 * 15 13 11 19 19 C 1.39293 * 120.19340 * 359.47621 * 7 6 5 20 20 N 1.48016 * 119.95226 * 180.23364 * 19 7 6 21 21 O 1.21804 * 119.99891 * 180.02562 * 20 19 7 22 22 O 1.21799 * 120.00179 * 0.02562 * 20 19 7 23 23 C 1.36559 * 120.09766 * 0.26012 * 19 7 6 24 24 H 1.09004 * 109.47108 * 269.99674 * 1 2 3 25 25 H 1.08994 * 109.47290 * 29.99959 * 1 2 3 26 26 H 1.09001 * 109.47075 * 150.00345 * 1 2 3 27 27 H 1.08004 * 120.05592 * 0.04981 * 5 4 2 28 28 H 1.07996 * 119.95062 * 180.25852 * 6 5 4 29 29 H 1.09009 * 109.47037 * 59.99564 * 9 8 7 30 30 H 1.08992 * 109.47254 * 179.97438 * 9 8 7 31 31 H 1.09004 * 109.47303 * 299.99936 * 9 8 7 32 32 H 1.09003 * 109.47282 * 290.00202 * 10 8 7 33 33 H 1.09001 * 109.47321 * 50.00235 * 10 8 7 34 34 H 0.96997 * 119.99980 * 179.97438 * 14 13 11 35 35 H 1.07999 * 120.05404 * 179.97438 * 23 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2408 -1.2709 -0.0006 5 6 1.5422 -2.4856 -0.0005 6 6 2.2288 -3.6657 -0.0060 7 6 3.6221 -3.6633 -0.0006 8 7 4.3167 -4.8661 -0.0012 9 6 4.0588 -5.6234 1.2309 10 6 3.9857 -5.6645 -1.1889 11 6 4.9279 -6.8367 -1.2847 12 1 5.6956 -6.9750 -0.5378 13 6 4.8093 -7.7333 -2.3255 14 7 3.8742 -7.5653 -3.2348 15 14 5.9777 -9.1859 -2.4447 16 1 5.8460 -10.0282 -1.2287 17 1 5.6431 -9.9931 -3.6453 18 1 7.3734 -8.6907 -2.5549 19 6 4.3205 -2.4581 -0.0006 20 7 5.8007 -2.4618 -0.0001 21 8 6.4123 -1.4084 0.0003 22 8 6.4071 -3.5181 -0.0001 23 6 3.6417 -1.2732 -0.0006 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4621 -2.4884 -0.0009 28 1 1.6912 -4.6023 -0.0102 29 1 2.9925 -5.8354 1.3107 30 1 4.6143 -6.5607 1.2042 31 1 4.3778 -5.0360 2.0920 32 1 2.9610 -6.0277 -1.1087 33 1 4.0831 -5.0461 -2.0812 34 1 3.7910 -8.1958 -3.9672 35 1 4.1839 -0.3392 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019871118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:13 Heat of formation + Delta-G solvation = -11.805383 kcal Electronic energy + Delta-G solvation = -21513.727038 eV Core-core repulsion = 18094.337771 eV Total energy + Delta-G solvation = -3419.389267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.19052 -41.46067 -40.14340 -37.91194 -37.29344 -34.77003 -33.64020 -32.05820 -30.50028 -29.29572 -27.71713 -26.71524 -25.03257 -23.67157 -22.69248 -21.52534 -19.69899 -19.34892 -18.57759 -18.45186 -17.83633 -17.23073 -16.99578 -16.66686 -16.13544 -15.67021 -15.66563 -15.43445 -14.85280 -14.28403 -13.94606 -13.84769 -13.51375 -13.17759 -13.01329 -12.87242 -12.76640 -12.60927 -12.54571 -12.46349 -12.18726 -12.09506 -12.06743 -11.45658 -11.00757 -10.82424 -10.62791 -10.22312 -9.33118 -8.23113 -6.31178 -1.22068 -0.73468 0.28871 0.48089 1.11402 1.43417 1.46995 1.54142 2.25361 2.39776 2.70185 2.86283 3.11663 3.36861 3.60559 3.68758 3.76514 3.92275 4.27784 4.36193 4.46829 4.51591 4.68599 4.69949 4.74843 4.80231 4.92043 5.04091 5.13755 5.15888 5.24915 5.37002 5.64585 5.96968 6.00752 6.37632 6.47436 6.65109 6.81142 7.37718 8.87660 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022296 B = 0.005001 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.550492 B = 5597.893474 C = 6317.222234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.405 3.595 3 O -0.497 6.497 4 C -0.186 4.186 5 C 0.018 3.982 6 C -0.166 4.166 7 C 0.190 3.810 8 N -0.526 5.526 9 C 0.048 3.952 10 C 0.224 3.776 11 C -0.522 4.522 12 H 0.065 0.935 13 C 0.010 3.990 14 N -0.931 5.931 15 Si 0.965 3.035 16 H -0.262 1.262 17 H -0.283 1.283 18 H -0.277 1.277 19 C -0.066 4.066 20 N 0.029 4.971 21 O -0.210 6.210 22 O -0.132 6.132 23 C -0.007 4.007 24 H 0.126 0.874 25 H 0.096 0.904 26 H 0.117 0.883 27 H 0.208 0.792 28 H 0.164 0.836 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.065 0.935 32 H -0.002 1.002 33 H -0.008 1.008 34 H 0.265 0.735 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.601 9.889 8.602 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.286 3.714 3 O -0.375 6.375 4 C -0.188 4.188 5 C 0.000 4.000 6 C -0.186 4.186 7 C 0.093 3.907 8 N -0.248 5.248 9 C -0.097 4.097 10 C 0.100 3.900 11 C -0.560 4.560 12 H 0.083 0.917 13 C -0.189 4.189 14 N -0.571 5.571 15 Si 0.790 3.210 16 H -0.187 1.187 17 H -0.209 1.209 18 H -0.202 1.202 19 C -0.151 4.151 20 N 0.545 4.455 21 O -0.414 6.414 22 O -0.356 6.356 23 C -0.027 4.027 24 H 0.144 0.856 25 H 0.115 0.885 26 H 0.135 0.865 27 H 0.224 0.776 28 H 0.181 0.819 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.016 0.984 33 H 0.010 0.990 34 H 0.074 0.926 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.530 10.519 8.431 18.405 hybrid contribution 0.883 -1.013 -0.505 1.436 sum -11.647 9.505 7.926 16.995 Atomic orbital electron populations 1.22321 0.88461 1.06997 1.07071 1.22935 0.93891 0.85369 0.69214 1.90593 1.73356 1.35193 1.38368 1.20804 0.91496 0.97694 1.08849 1.22023 1.03481 0.88497 0.85995 1.21929 0.91956 1.01995 1.02761 1.19435 0.92201 0.90839 0.88207 1.59575 1.56301 1.03323 1.05626 1.22287 1.00228 0.98480 0.88744 1.19431 0.94840 0.90767 0.84924 1.21345 1.16034 1.08176 1.10457 0.91672 1.25768 0.97190 1.00951 0.94984 1.70032 1.34560 1.38435 1.14103 0.85500 0.78930 0.78726 0.77884 1.18691 1.20852 1.20206 1.21060 0.78767 0.96524 1.18761 1.43744 1.04231 1.00094 0.97389 1.94434 1.69584 1.21476 1.55878 1.94697 1.69606 1.19838 1.51445 1.21034 0.95420 0.96363 0.89871 0.85562 0.88542 0.86454 0.77568 0.81873 0.93672 0.90535 0.91656 0.98420 0.99002 0.92579 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.29 9.75 71.24 0.69 -0.60 16 2 C 0.41 7.32 7.21 27.91 0.20 7.52 16 3 O -0.50 -13.33 17.08 -3.12 -0.05 -13.39 16 4 C -0.19 -3.92 5.87 -20.14 -0.12 -4.03 16 5 C 0.02 0.29 9.31 22.33 0.21 0.50 16 6 C -0.17 -4.10 8.57 22.13 0.19 -3.91 16 7 C 0.19 6.65 4.66 38.54 0.18 6.83 16 8 N -0.53 -21.89 2.56 -724.41 -1.86 -23.75 16 9 C 0.05 1.66 9.19 127.69 1.17 2.84 16 10 C 0.22 11.11 4.29 85.56 0.37 11.48 16 11 C -0.52 -28.47 8.46 25.60 0.22 -28.26 16 12 H 0.07 3.55 7.12 -2.91 -0.02 3.53 16 13 C 0.01 0.53 5.46 84.66 0.46 0.99 16 14 N -0.93 -53.48 13.29 21.45 0.28 -53.20 16 15 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 16 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 C -0.07 -2.38 6.83 36.24 0.25 -2.13 16 20 N 0.03 1.24 4.45 -46.79 -0.21 1.03 16 21 O -0.21 -8.74 18.42 18.88 0.35 -8.39 16 22 O -0.13 -6.24 17.09 18.89 0.32 -5.92 16 23 C -0.01 -0.21 9.05 22.33 0.20 -0.01 16 24 H 0.13 0.33 8.14 -2.38 -0.02 0.31 16 25 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.12 0.16 6.45 -2.39 -0.02 0.15 16 27 H 0.21 0.91 6.34 -2.91 -0.02 0.89 16 28 H 0.16 3.69 7.09 -2.91 -0.02 3.67 16 29 H 0.04 1.34 7.33 -2.38 -0.02 1.32 16 30 H 0.08 2.90 6.76 -2.39 -0.02 2.88 16 31 H 0.06 2.02 8.14 -2.38 -0.02 2.01 16 32 H 0.00 -0.09 7.43 -2.39 -0.02 -0.11 16 33 H -0.01 -0.46 8.06 -2.39 -0.02 -0.48 16 34 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.15 4.62 7.16 -2.91 -0.02 4.60 16 Total: -1.00 -73.86 308.87 6.01 -67.85 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: 1.13 Total: -0.89 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 4.02 Total: -8.80 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.78 Total: -75.92 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: 0.62 Total: -27.70 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -73.86 6.01 -67.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019871118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.048 kcal (2) G-P(sol) polarization free energy of solvation -73.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds