Wall clock time and date at job start Tue Mar 31 2020 01:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47000 * 2 1 4 4 C 1.46496 * 120.00112 * 277.46943 * 3 2 1 5 5 C 1.50701 * 109.47662 * 269.99882 * 4 3 2 6 6 H 1.08005 * 119.99465 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00221 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99731 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99889 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47325 * 89.99847 * 9 7 5 11 11 H 1.48501 * 109.46884 * 209.99554 * 9 7 5 12 12 H 1.48505 * 109.47239 * 329.99518 * 9 7 5 13 13 C 1.34782 * 119.99754 * 97.47252 * 3 2 1 14 14 O 1.21531 * 119.99857 * 185.68188 * 13 3 2 15 15 C 1.48016 * 120.00220 * 5.68509 * 13 3 2 16 16 C 1.39860 * 120.45641 * 314.93832 * 15 13 3 17 17 C 1.38459 * 118.35693 * 179.97438 * 16 15 13 18 18 C 1.39332 * 119.18907 * 359.97438 * 17 16 15 19 19 C 1.48243 * 119.57632 * 179.97438 * 18 17 16 20 20 O 1.21406 * 120.00135 * 359.97438 * 19 18 17 21 21 O 1.34663 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.32744 * 120.84528 * 359.97438 * 18 17 16 23 23 C 1.31402 * 121.80360 * 0.04831 * 22 18 17 24 24 H 1.08999 * 109.46686 * 309.04839 * 1 2 3 25 25 H 1.09000 * 109.46990 * 69.04330 * 1 2 3 26 26 H 1.08998 * 109.47009 * 189.04862 * 1 2 3 27 27 H 1.09003 * 109.47344 * 240.00397 * 2 1 3 28 28 H 1.08996 * 109.47248 * 119.99946 * 2 1 3 29 29 H 1.09000 * 109.47507 * 30.00817 * 4 3 2 30 30 H 1.09006 * 109.47259 * 150.00039 * 4 3 2 31 31 H 0.97001 * 120.00102 * 180.02562 * 8 7 5 32 32 H 1.07995 * 120.82223 * 359.95102 * 16 15 13 33 33 H 1.08006 * 120.40458 * 179.71806 * 17 16 15 34 34 H 0.96693 * 116.99755 * 180.02562 * 21 19 18 35 35 H 1.08000 * 119.64033 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1070 2.1268 -1.2579 5 6 3.4656 1.9130 -1.8740 6 1 4.1904 1.2842 -1.3783 7 6 3.7829 2.5193 -3.0710 8 7 4.9683 2.3323 -3.6089 9 14 2.5290 3.6063 -3.9287 10 1 2.6870 5.0073 -3.4623 11 1 2.7437 3.5462 -5.3969 12 1 1.1594 3.1295 -3.6088 13 6 2.3861 1.9660 1.1574 14 8 2.6926 3.1419 1.1735 15 6 2.4167 1.1760 2.4087 16 6 1.3602 0.3183 2.7317 17 6 1.4341 -0.4004 3.9128 18 6 2.5499 -0.2468 4.7330 19 6 2.6377 -1.0117 5.9998 20 8 1.7407 -1.7658 6.3170 21 8 3.7120 -0.8693 6.7992 22 7 3.5353 0.5758 4.3946 23 6 3.5023 1.2754 3.2828 24 1 -0.3633 0.6474 0.7981 25 1 -0.3633 0.3676 -0.9597 26 1 -0.3633 -1.0149 0.1616 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.3371 1.7743 -1.9443 30 1 1.9601 3.1890 -1.0619 31 1 5.1917 2.7591 -4.4508 32 1 0.5076 0.2194 2.0762 33 1 0.6347 -1.0689 4.1968 34 1 3.7244 -1.3891 7.6145 35 1 4.3232 1.9346 3.0420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042453756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:37 Heat of formation + Delta-G solvation = -71.481769 kcal Electronic energy + Delta-G solvation = -21154.843323 eV Core-core repulsion = 17732.866293 eV Total energy + Delta-G solvation = -3421.977029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12868 -40.04183 -38.65910 -36.40405 -35.79957 -33.35345 -32.44369 -31.81038 -30.54644 -28.15117 -25.93990 -23.96492 -23.19918 -22.81793 -21.83030 -19.18108 -18.67815 -17.84633 -17.13480 -17.00105 -16.48126 -16.06545 -15.81067 -15.07631 -14.54424 -14.47655 -14.22530 -14.03655 -13.70772 -13.33163 -12.80846 -12.60833 -12.56127 -12.38600 -11.96644 -11.83443 -11.55912 -11.18544 -11.15417 -11.01386 -10.61543 -10.28247 -10.06647 -9.97324 -9.65588 -9.50183 -9.25226 -8.66928 -7.94840 -6.16611 -4.16991 0.08104 0.94204 2.04572 2.56087 3.04732 3.23334 3.28974 3.31315 3.43864 3.68753 4.01810 4.32254 4.49236 4.59609 4.68451 4.73144 5.02911 5.08943 5.17257 5.33019 5.42931 5.47783 5.66713 5.75011 5.78678 6.01542 6.09977 6.22257 6.25645 6.56491 6.81314 7.11179 7.34826 7.49760 7.68699 7.96892 8.34833 8.63043 8.85998 9.42412 10.96447 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031867 B = 0.004135 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.442714 B = 6769.427188 C = 7174.621476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.093 3.907 3 N -0.579 5.579 4 C 0.216 3.784 5 C -0.535 4.535 6 H 0.076 0.924 7 C 0.075 3.925 8 N -0.894 5.894 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.551 3.449 14 O -0.524 6.524 15 C -0.128 4.128 16 C -0.071 4.071 17 C -0.110 4.110 18 C 0.092 3.908 19 C 0.546 3.454 20 O -0.508 6.508 21 O -0.490 6.490 22 N -0.435 5.435 23 C 0.146 3.854 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.413 0.587 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 -7.917 14.554 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.031 4.031 3 N -0.310 5.310 4 C 0.096 3.904 5 C -0.574 4.574 6 H 0.094 0.906 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.336 3.664 14 O -0.401 6.401 15 C -0.134 4.134 16 C -0.097 4.097 17 C -0.131 4.131 18 C -0.045 4.045 19 C 0.388 3.612 20 O -0.396 6.396 21 O -0.300 6.300 22 N -0.146 5.146 23 C -0.014 4.014 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.181 0.819 33 H 0.173 0.827 34 H 0.271 0.729 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -8.003 -7.166 14.677 18.188 hybrid contribution -1.148 0.062 -0.639 1.315 sum -9.151 -7.103 14.038 18.200 Atomic orbital electron populations 1.22379 0.96407 1.01893 1.02866 1.21751 0.93713 0.83863 1.03766 1.47897 1.61824 1.13509 1.07723 1.19747 0.98153 0.92722 0.79819 1.21293 0.98259 1.31457 1.06358 0.90626 1.24840 0.95259 0.95875 0.96838 1.69886 1.20276 1.43828 1.19200 0.86859 0.82051 0.81836 0.79000 1.19789 1.20987 1.19044 1.17944 0.78813 0.86870 0.82780 1.90796 1.48322 1.15365 1.85583 1.21613 0.96616 0.97489 0.97643 1.22412 0.98985 0.92386 0.95884 1.22011 0.98039 0.99549 0.93474 1.20076 0.93072 0.97668 0.93684 1.20522 0.79018 0.78673 0.82952 1.90898 1.39292 1.36257 1.73137 1.84701 1.43315 1.66252 1.35725 1.67723 1.25764 1.04291 1.16782 1.23029 0.96779 0.94536 0.87090 0.92375 0.91410 0.91337 0.89279 0.90756 0.94790 0.94134 0.92416 0.81904 0.82737 0.72915 0.80546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 9.13 37.16 0.34 -1.59 16 2 C 0.09 1.32 5.60 -4.04 -0.02 1.30 16 3 N -0.58 -11.04 2.46 -176.11 -0.43 -11.47 16 4 C 0.22 4.95 4.29 -5.20 -0.02 4.93 16 5 C -0.54 -14.71 9.94 -34.44 -0.34 -15.05 16 6 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 9 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 13 C 0.55 10.61 7.30 -12.25 -0.09 10.52 16 14 O -0.52 -12.15 16.55 5.34 0.09 -12.07 16 15 C -0.13 -1.93 5.11 -104.72 -0.54 -2.46 16 16 C -0.07 -0.83 7.53 -38.89 -0.29 -1.12 16 17 C -0.11 -1.21 9.62 -39.09 -0.38 -1.58 16 18 C 0.09 1.16 6.75 -82.95 -0.56 0.60 16 19 C 0.55 6.34 8.33 34.84 0.29 6.63 16 20 O -0.51 -6.49 17.10 -19.19 -0.33 -6.82 16 21 O -0.49 -4.63 13.24 -40.39 -0.53 -5.16 16 22 N -0.43 -6.19 10.10 -9.49 -0.10 -6.29 16 23 C 0.15 2.16 10.85 -17.18 -0.19 1.98 16 24 H 0.06 0.60 6.36 -51.93 -0.33 0.27 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 28 H 0.07 0.92 5.08 -51.93 -0.26 0.66 16 29 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 30 H 0.04 1.00 6.78 -51.93 -0.35 0.65 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.16 1.60 3.75 -52.49 -0.20 1.40 16 33 H 0.15 1.35 7.63 -52.48 -0.40 0.95 16 34 H 0.41 1.64 9.11 45.56 0.42 2.06 16 35 H 0.18 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 306.21 15.07 4.61 4.61 Total: -1.00 -34.70 306.21 -5.26 -39.96 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -2.78 Total: 1.00 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -1.90 Total: 6.15 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.24 Total: -43.78 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.77 Total: -24.04 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.70 -5.26 -39.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042453756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.520 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds