Wall clock time and date at job start Tue Mar 31 2020 01:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47000 * 2 1 4 4 C 1.46496 * 120.00112 * 277.46943 * 3 2 1 5 5 C 1.50701 * 109.47662 * 269.99882 * 4 3 2 6 6 H 1.08005 * 119.99465 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00221 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99731 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99889 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47325 * 89.99847 * 9 7 5 11 11 H 1.48501 * 109.46884 * 209.99554 * 9 7 5 12 12 H 1.48505 * 109.47239 * 329.99518 * 9 7 5 13 13 C 1.34782 * 119.99754 * 97.47252 * 3 2 1 14 14 O 1.21531 * 119.99857 * 185.68188 * 13 3 2 15 15 C 1.48016 * 120.00220 * 5.68509 * 13 3 2 16 16 C 1.39860 * 120.45641 * 314.93832 * 15 13 3 17 17 C 1.38459 * 118.35693 * 179.97438 * 16 15 13 18 18 C 1.39332 * 119.18907 * 359.97438 * 17 16 15 19 19 C 1.48243 * 119.57632 * 179.97438 * 18 17 16 20 20 O 1.21406 * 120.00135 * 359.97438 * 19 18 17 21 21 O 1.34663 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.32744 * 120.84528 * 359.97438 * 18 17 16 23 23 C 1.31402 * 121.80360 * 0.04831 * 22 18 17 24 24 H 1.08999 * 109.46686 * 309.04839 * 1 2 3 25 25 H 1.09000 * 109.46990 * 69.04330 * 1 2 3 26 26 H 1.08998 * 109.47009 * 189.04862 * 1 2 3 27 27 H 1.09003 * 109.47344 * 240.00397 * 2 1 3 28 28 H 1.08996 * 109.47248 * 119.99946 * 2 1 3 29 29 H 1.09000 * 109.47507 * 30.00817 * 4 3 2 30 30 H 1.09006 * 109.47259 * 150.00039 * 4 3 2 31 31 H 0.97001 * 120.00102 * 180.02562 * 8 7 5 32 32 H 1.07995 * 120.82223 * 359.95102 * 16 15 13 33 33 H 1.08006 * 120.40458 * 179.71806 * 17 16 15 34 34 H 0.96693 * 116.99755 * 180.02562 * 21 19 18 35 35 H 1.08000 * 119.64033 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1070 2.1268 -1.2579 5 6 3.4656 1.9130 -1.8740 6 1 4.1904 1.2842 -1.3783 7 6 3.7829 2.5193 -3.0710 8 7 4.9683 2.3323 -3.6089 9 14 2.5290 3.6063 -3.9287 10 1 2.6870 5.0073 -3.4623 11 1 2.7437 3.5462 -5.3969 12 1 1.1594 3.1295 -3.6088 13 6 2.3861 1.9660 1.1574 14 8 2.6926 3.1419 1.1735 15 6 2.4167 1.1760 2.4087 16 6 1.3602 0.3183 2.7317 17 6 1.4341 -0.4004 3.9128 18 6 2.5499 -0.2468 4.7330 19 6 2.6377 -1.0117 5.9998 20 8 1.7407 -1.7658 6.3170 21 8 3.7120 -0.8693 6.7992 22 7 3.5353 0.5758 4.3946 23 6 3.5023 1.2754 3.2828 24 1 -0.3633 0.6474 0.7981 25 1 -0.3633 0.3676 -0.9597 26 1 -0.3633 -1.0149 0.1616 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.3371 1.7743 -1.9443 30 1 1.9601 3.1890 -1.0619 31 1 5.1917 2.7591 -4.4508 32 1 0.5076 0.2194 2.0762 33 1 0.6347 -1.0689 4.1968 34 1 3.7244 -1.3891 7.6145 35 1 4.3232 1.9346 3.0420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042453756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:37 Heat of formation + Delta-G solvation = -97.555463 kcal Electronic energy + Delta-G solvation = -21155.973963 eV Core-core repulsion = 17732.866293 eV Total energy + Delta-G solvation = -3423.107669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.19465 -41.12280 -39.92753 -37.29797 -37.21575 -35.06935 -33.92971 -32.89349 -31.85169 -29.85153 -27.12736 -25.14726 -24.50548 -24.16671 -22.97326 -20.58768 -19.57622 -19.12246 -18.77623 -18.38951 -17.69297 -17.27440 -16.90310 -16.33069 -16.13693 -15.82315 -15.32954 -15.31318 -14.79748 -14.63563 -14.40021 -13.85159 -13.79159 -13.62519 -13.47281 -13.17691 -12.65241 -12.56585 -12.39841 -12.20839 -12.10405 -12.01210 -11.74754 -11.29004 -11.00302 -10.82956 -10.73599 -10.50046 -9.55238 -8.33926 -6.40151 -0.95858 -0.05311 1.05562 1.34594 1.38912 1.46570 1.62829 1.75409 2.10442 2.31578 2.56081 2.99216 3.01914 3.31992 3.56852 3.72366 3.80898 4.03751 4.07851 4.31357 4.48741 4.52579 4.67897 4.75163 4.78662 4.89128 4.95178 4.98573 5.20578 5.37204 5.39265 5.44418 5.52791 6.20293 6.37108 6.50630 6.62019 6.91321 7.08703 7.26393 8.82810 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031867 B = 0.004135 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.442714 B = 6769.427188 C = 7174.621476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.085 3.915 3 N -0.585 5.585 4 C 0.224 3.776 5 C -0.541 4.541 6 H 0.030 0.970 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.277 1.277 12 H -0.234 1.234 13 C 0.547 3.453 14 O -0.577 6.577 15 C -0.144 4.144 16 C -0.051 4.051 17 C -0.094 4.094 18 C 0.084 3.916 19 C 0.553 3.447 20 O -0.518 6.518 21 O -0.492 6.492 22 N -0.448 5.448 23 C 0.137 3.863 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.025 0.975 31 H 0.269 0.731 32 H 0.189 0.811 33 H 0.188 0.812 34 H 0.436 0.564 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.808 -9.325 15.565 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.037 4.037 3 N -0.314 5.314 4 C 0.103 3.897 5 C -0.579 4.579 6 H 0.048 0.952 7 C -0.185 4.185 8 N -0.584 5.584 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.202 1.202 12 H -0.157 1.157 13 C 0.334 3.666 14 O -0.457 6.457 15 C -0.150 4.150 16 C -0.076 4.076 17 C -0.113 4.113 18 C -0.053 4.053 19 C 0.395 3.605 20 O -0.408 6.408 21 O -0.305 6.305 22 N -0.159 5.159 23 C -0.024 4.024 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.125 0.875 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.205 0.795 33 H 0.205 0.795 34 H 0.298 0.702 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.083 -8.637 15.730 21.092 hybrid contribution -0.084 0.383 -0.807 0.897 sum -11.167 -8.253 14.924 20.384 Atomic orbital electron populations 1.22348 0.93037 1.04533 1.02927 1.22093 0.96389 0.81066 1.04181 1.47972 1.61814 1.15182 1.06432 1.19410 0.95909 0.92651 0.81774 1.21547 0.99625 1.30405 1.06368 0.95195 1.25830 0.97461 0.97438 0.97756 1.70044 1.22785 1.45550 1.20019 0.85740 0.80643 0.79053 0.77693 1.20179 1.20229 1.15667 1.18533 0.77417 0.86587 0.84014 1.90752 1.50521 1.17815 1.86655 1.21228 0.98523 0.99148 0.96070 1.22620 0.98143 0.90579 0.96259 1.22317 0.97936 0.98878 0.92197 1.20530 0.93170 0.97090 0.94485 1.20269 0.79219 0.78230 0.82752 1.90900 1.39762 1.36703 1.73390 1.84655 1.42333 1.66661 1.36833 1.67713 1.26826 1.04940 1.16439 1.22877 0.96871 0.95006 0.87616 0.91328 0.92203 0.87519 0.90553 0.88810 0.92464 0.95694 0.92228 0.79462 0.79465 0.70162 0.81708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.13 71.98 0.66 -2.40 16 2 C 0.08 2.25 5.60 86.38 0.48 2.73 16 3 N -0.58 -22.22 2.46 -829.36 -2.04 -24.26 16 4 C 0.22 10.33 4.29 85.63 0.37 10.70 16 5 C -0.54 -30.79 9.94 25.60 0.25 -30.53 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 7 C 0.01 0.78 5.47 84.66 0.46 1.24 16 8 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 9 Si 0.95 42.89 27.47 68.60 1.88 44.78 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.23 -9.31 6.54 99.48 0.65 -8.66 16 13 C 0.55 21.45 7.30 86.84 0.63 22.08 16 14 O -0.58 -27.95 16.55 -3.81 -0.06 -28.01 16 15 C -0.14 -4.27 5.11 -19.93 -0.10 -4.37 16 16 C -0.05 -1.03 7.53 22.72 0.17 -0.86 16 17 C -0.09 -1.70 9.62 22.59 0.22 -1.48 16 18 C 0.08 1.93 6.75 41.93 0.28 2.22 16 19 C 0.55 11.38 8.33 70.48 0.59 11.96 16 20 O -0.52 -11.60 17.10 20.14 0.34 -11.26 16 21 O -0.49 -8.16 13.24 -55.72 -0.74 -8.90 16 22 N -0.45 -12.44 10.10 -183.95 -1.86 -14.30 16 23 C 0.14 4.12 10.85 85.12 0.92 5.04 16 24 H 0.07 1.11 6.36 -2.39 -0.02 1.09 16 25 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.08 2.23 8.13 -2.39 -0.02 2.21 16 28 H 0.09 2.10 5.08 -2.39 -0.01 2.09 16 29 H 0.06 2.37 7.13 -2.39 -0.02 2.36 16 30 H 0.02 1.24 6.78 -2.38 -0.02 1.22 16 31 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 32 H 0.19 2.86 3.75 -2.91 -0.01 2.85 16 33 H 0.19 2.27 7.63 -2.91 -0.02 2.24 16 34 H 0.44 2.33 9.11 -74.06 -0.67 1.65 16 35 H 0.17 5.16 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -79.38 306.21 3.19 -76.19 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.42 Total: 7.76 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 4.94 Total: 16.33 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -3.60 Total: -96.88 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -0.46 Total: -48.17 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.78 kcal Total: -79.38 3.19 -76.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042453756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.366 kcal (2) G-P(sol) polarization free energy of solvation -79.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds