Wall clock time and date at job start Tue Mar 31 2020 01:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47337 * 2 1 4 4 C 1.46502 * 119.99984 * 271.87986 * 3 2 1 5 5 C 1.50700 * 109.47016 * 265.04623 * 4 3 2 6 6 H 1.07996 * 120.00060 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99782 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99938 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00189 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47096 * 89.99970 * 9 7 5 11 11 H 1.48501 * 109.47098 * 209.99986 * 9 7 5 12 12 H 1.48501 * 109.47022 * 329.99920 * 9 7 5 13 13 C 1.34779 * 119.99897 * 91.87795 * 3 2 1 14 14 O 1.21487 * 120.00117 * 354.61622 * 13 3 2 15 15 C 1.48342 * 119.99558 * 174.89001 * 13 3 2 16 16 C 1.39308 * 119.56360 * 173.35766 * 15 13 3 17 17 C 1.38444 * 119.19846 * 179.97438 * 16 15 13 18 18 C 1.39914 * 118.35014 * 359.97438 * 17 16 15 19 19 C 1.47893 * 120.46651 * 179.97438 * 18 17 16 20 20 O 1.21443 * 120.00129 * 0.02562 * 19 18 17 21 21 O 1.34697 * 119.99943 * 179.97438 * 19 18 17 22 22 C 1.39773 * 119.06333 * 359.97438 * 18 17 16 23 23 N 1.31405 * 120.71665 * 359.74374 * 22 18 17 24 24 H 1.08997 * 109.46752 * 59.99579 * 1 2 3 25 25 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46612 * 300.00259 * 1 2 3 27 27 H 1.09007 * 109.46652 * 239.99941 * 2 1 3 28 28 H 1.09004 * 109.47111 * 120.00424 * 2 1 3 29 29 H 1.08996 * 109.47149 * 25.04801 * 4 3 2 30 30 H 1.08999 * 109.46957 * 145.04551 * 4 3 2 31 31 H 0.97001 * 120.00178 * 179.97438 * 8 7 5 32 32 H 1.08010 * 120.40051 * 359.95261 * 16 15 13 33 33 H 1.08003 * 120.82363 * 180.02562 * 17 16 15 34 34 H 0.96703 * 116.99689 * 180.02562 * 21 19 18 35 35 H 1.08009 * 119.63893 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2234 2.0856 -1.2681 5 6 3.6648 1.9551 -1.6880 6 1 4.3589 1.4029 -1.0717 7 6 4.0977 2.5414 -2.8584 8 7 5.3557 2.4278 -3.2246 9 14 2.8973 3.4969 -3.9239 10 1 2.8892 4.9216 -3.5049 11 1 3.3138 3.4017 -5.3462 12 1 1.5349 2.9272 -3.7678 13 6 2.2792 2.0037 1.1666 14 8 2.0174 1.4563 2.2191 15 6 2.8801 3.3600 1.1653 16 6 3.0178 4.0519 2.3665 17 6 3.5801 5.3169 2.3567 18 6 3.9906 5.8520 1.1308 19 6 4.5967 7.1995 1.0660 20 8 4.7415 7.8496 2.0814 21 8 4.9890 7.7052 -0.1192 22 6 3.8198 5.0950 -0.0317 23 7 3.2865 3.8952 0.0209 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.5811 1.6503 -2.0335 30 1 1.9756 3.1396 -1.1423 31 1 5.6602 2.8400 -4.0482 32 1 2.6894 3.6069 3.2943 33 1 3.6998 5.8766 3.2726 34 1 5.3800 8.5896 -0.1113 35 1 4.1330 5.4992 -0.9831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042453757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:32 Heat of formation + Delta-G solvation = -86.716375 kcal Electronic energy + Delta-G solvation = -21796.127535 eV Core-core repulsion = 18373.489884 eV Total energy + Delta-G solvation = -3422.637651 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.02648 -41.06417 -39.80163 -37.21660 -37.10762 -34.57079 -33.88183 -32.89203 -31.80923 -29.44799 -27.07857 -24.77310 -24.41270 -24.29584 -22.69315 -20.71037 -19.41061 -18.94218 -18.54558 -18.22484 -17.78913 -16.80643 -16.63672 -16.40095 -16.15510 -15.68797 -15.34408 -14.67923 -14.62543 -14.59728 -14.48054 -14.23759 -13.74565 -13.54975 -13.14997 -13.10638 -12.66037 -12.55037 -12.43012 -12.00638 -11.96929 -11.85906 -11.58646 -11.25946 -11.10202 -10.56611 -10.41159 -10.02610 -9.45705 -8.11330 -6.08295 -0.91830 0.17193 1.13833 1.46329 1.47672 1.55483 1.83801 1.90180 2.13840 2.47617 2.78592 3.12140 3.27533 3.60386 3.66604 3.76894 4.01774 4.14271 4.21644 4.38158 4.54106 4.66328 4.77150 4.79803 4.89476 4.96079 5.02766 5.12462 5.32352 5.41585 5.45892 5.64442 5.73953 6.27620 6.53793 6.73586 6.85048 6.90551 7.16023 7.49793 9.05928 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.013606 B = 0.008087 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.461744 B = 3461.532473 C = 5080.814608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.104 3.896 3 N -0.576 5.576 4 C 0.219 3.781 5 C -0.478 4.478 6 H 0.020 0.980 7 C 0.028 3.972 8 N -0.951 5.951 9 Si 0.926 3.074 10 H -0.258 1.258 11 H -0.294 1.294 12 H -0.249 1.249 13 C 0.557 3.443 14 O -0.573 6.573 15 C 0.089 3.911 16 C -0.121 4.121 17 C -0.014 4.014 18 C -0.168 4.168 19 C 0.547 3.453 20 O -0.532 6.532 21 O -0.502 6.502 22 C 0.142 3.858 23 N -0.425 5.425 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.262 0.738 32 H 0.169 0.831 33 H 0.180 0.820 34 H 0.437 0.563 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 7.500 6.040 11.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 N -0.304 5.304 4 C 0.098 3.902 5 C -0.517 4.517 6 H 0.038 0.962 7 C -0.169 4.169 8 N -0.593 5.593 9 Si 0.751 3.249 10 H -0.182 1.182 11 H -0.221 1.221 12 H -0.173 1.173 13 C 0.345 3.655 14 O -0.454 6.454 15 C -0.048 4.048 16 C -0.142 4.142 17 C -0.039 4.039 18 C -0.172 4.172 19 C 0.391 3.609 20 O -0.424 6.424 21 O -0.316 6.316 22 C -0.018 4.018 23 N -0.135 5.135 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.186 0.814 33 H 0.197 0.803 34 H 0.300 0.700 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.116 6.509 5.907 11.310 hybrid contribution 0.673 1.255 -0.151 1.432 sum -6.443 7.764 5.757 11.616 Atomic orbital electron populations 1.22021 0.93891 1.03398 1.01703 1.21601 0.95789 0.81538 1.02891 1.48049 1.61028 1.14401 1.06889 1.20000 0.95585 0.94044 0.80612 1.21056 0.93896 1.31284 1.05453 0.96183 1.25397 0.96101 0.96809 0.98586 1.70054 1.17238 1.47253 1.24769 0.86046 0.80554 0.80736 0.77577 1.18207 1.22094 1.17258 1.18194 0.78399 0.85177 0.83777 1.90661 1.55857 1.67362 1.31556 1.21616 0.97111 0.95311 0.90798 1.22205 0.98464 0.94348 0.99136 1.21871 0.90727 0.93529 0.97803 1.20440 1.06048 0.94225 0.96453 1.20383 0.74047 0.85473 0.80955 1.90863 1.53887 1.61030 1.36606 1.84568 1.73588 1.40444 1.32987 1.23461 0.91272 0.88589 0.98519 1.68689 1.07524 1.10320 1.26959 0.92389 0.89165 0.93357 0.90019 0.91009 0.94881 0.91970 0.92892 0.81356 0.80313 0.69968 0.81458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 10.24 71.98 0.74 -3.42 16 2 C 0.10 3.57 6.09 86.38 0.53 4.09 16 3 N -0.58 -23.53 2.47 -828.99 -2.05 -25.58 16 4 C 0.22 9.64 3.82 85.63 0.33 9.96 16 5 C -0.48 -25.26 7.98 25.60 0.20 -25.06 16 6 H 0.02 1.23 8.06 -2.91 -0.02 1.21 16 7 C 0.03 1.50 5.47 84.65 0.46 1.96 16 8 N -0.95 -56.07 13.96 21.45 0.30 -55.77 16 9 Si 0.93 40.35 27.47 68.60 1.88 42.23 16 10 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.25 -9.99 6.54 99.48 0.65 -9.34 16 13 C 0.56 22.91 7.61 86.93 0.66 23.57 16 14 O -0.57 -24.16 15.93 -3.67 -0.06 -24.22 16 15 C 0.09 3.38 6.56 41.96 0.28 3.65 16 16 C -0.12 -3.60 9.62 22.58 0.22 -3.38 16 17 C -0.01 -0.36 9.71 22.73 0.22 -0.14 16 18 C -0.17 -4.86 5.89 -19.94 -0.12 -4.97 16 19 C 0.55 14.09 8.28 70.38 0.58 14.67 16 20 O -0.53 -15.14 17.20 20.02 0.34 -14.80 16 21 O -0.50 -10.33 12.70 -56.06 -0.71 -11.04 16 22 C 0.14 4.93 10.78 85.13 0.92 5.85 16 23 N -0.42 -17.11 4.76 -183.86 -0.88 -17.99 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 2.77 8.09 -2.38 -0.02 2.75 16 28 H 0.07 2.50 7.45 -2.38 -0.02 2.48 16 29 H 0.03 1.41 7.09 -2.39 -0.02 1.39 16 30 H 0.06 2.71 5.16 -2.39 -0.01 2.70 16 31 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.17 4.40 7.64 -2.91 -0.02 4.38 16 33 H 0.18 3.60 7.73 -2.91 -0.02 3.58 16 34 H 0.44 4.25 9.11 -74.06 -0.67 3.57 16 35 H 0.17 5.77 7.62 -2.91 -0.02 5.75 16 Total: -1.00 -69.64 307.98 4.25 -65.39 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.40 Total: 14.99 kcal Atomic # 6 Polarization: 21.77 SS G_CDS: 5.02 Total: 26.78 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -2.62 Total: -99.34 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -0.43 Total: -50.06 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.88 Total: 42.23 kcal Total: -69.64 4.25 -65.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042453757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.327 kcal (2) G-P(sol) polarization free energy of solvation -69.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds