Wall clock time and date at job start Tue Mar 31 2020 01:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47086 * 2 1 4 4 C 1.46498 * 120.00039 * 264.98254 * 3 2 1 5 5 C 1.50702 * 109.46897 * 269.99903 * 4 3 2 6 6 H 1.07999 * 119.99985 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00003 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00178 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99800 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47393 * 60.00088 * 9 7 5 11 11 H 1.48502 * 109.47111 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47295 * 299.99744 * 9 7 5 13 13 C 1.34775 * 120.00279 * 84.97903 * 3 2 1 14 14 O 1.21550 * 120.00331 * 185.55675 * 13 3 2 15 15 C 1.47849 * 119.99802 * 5.55605 * 13 3 2 16 16 C 1.39596 * 120.14247 * 64.17847 * 15 13 3 17 17 C 1.37936 * 119.85144 * 180.02562 * 16 15 13 18 18 C 1.38376 * 120.14897 * 359.72317 * 17 16 15 19 19 C 1.38345 * 120.28823 * 0.55234 * 18 17 16 20 20 C 1.37976 * 120.14158 * 359.44812 * 19 18 17 21 21 N 1.48020 * 120.06940 * 180.29701 * 20 19 18 22 22 O 1.21797 * 120.00221 * 355.28139 * 21 20 19 23 23 O 1.21804 * 119.99976 * 175.28301 * 21 20 19 24 24 H 1.09006 * 109.46684 * 60.00328 * 1 2 3 25 25 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47401 * 300.00046 * 1 2 3 27 27 H 1.09000 * 109.47215 * 239.99953 * 2 1 3 28 28 H 1.09001 * 109.46760 * 120.00155 * 2 1 3 29 29 H 1.08996 * 109.47576 * 29.99603 * 4 3 2 30 30 H 1.08992 * 109.47575 * 149.99988 * 4 3 2 31 31 H 0.96995 * 119.99897 * 179.97438 * 8 7 5 32 32 H 1.08002 * 120.07560 * 359.97438 * 16 15 13 33 33 H 1.08009 * 119.92384 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.86025 * 180.30267 * 18 17 16 35 35 H 1.08002 * 119.92396 * 179.72818 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3671 2.0348 -1.2638 5 6 3.8211 1.7871 -1.5729 6 1 4.4251 1.2018 -0.8954 7 6 4.3804 2.3078 -2.7206 8 7 3.6449 3.0202 -3.5459 9 14 6.1826 2.0002 -3.1039 10 1 6.4218 0.5392 -3.2193 11 1 6.5360 2.6618 -4.3856 12 1 7.0226 2.5547 -2.0121 13 6 2.1467 2.0506 1.1627 14 8 2.4545 3.2265 1.1562 15 6 1.9130 1.3547 2.4460 16 6 2.7470 0.3055 2.8365 17 6 2.5232 -0.3399 4.0348 18 6 1.4783 0.0542 4.8519 19 6 0.6447 1.0895 4.4683 20 6 0.8576 1.7434 3.2721 21 7 -0.0313 2.8552 2.8663 22 8 -1.0022 3.1377 3.5453 23 8 0.2082 3.4877 1.8532 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7509 1.6279 -2.0656 30 1 2.1913 3.1071 -1.1790 31 1 4.0384 3.3868 -4.3530 32 1 3.5651 -0.0007 2.2013 33 1 3.1675 -1.1521 4.3378 34 1 1.3104 -0.4512 5.7915 35 1 -0.1717 1.3894 5.1086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:27 Heat of formation + Delta-G solvation = -4.188982 kcal Electronic energy + Delta-G solvation = -22134.859581 eV Core-core repulsion = 18715.800586 eV Total energy + Delta-G solvation = -3419.058995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.01523 -39.98723 -38.29935 -36.24148 -35.36853 -32.90835 -32.12291 -31.62676 -30.20155 -27.38648 -26.37681 -24.25967 -23.19714 -22.61944 -22.11839 -19.73036 -18.61255 -18.20840 -17.29302 -17.00106 -16.46639 -15.88571 -15.57650 -15.51830 -14.68604 -14.37608 -14.03199 -13.50940 -13.30217 -13.05874 -12.69856 -12.33469 -12.08272 -12.03134 -11.68509 -11.27098 -11.24400 -11.02025 -10.86291 -10.80702 -10.74515 -10.56618 -10.18306 -9.76812 -9.69386 -9.49956 -9.11398 -8.45229 -7.74409 -6.06231 -4.12230 -0.16022 0.63725 1.41850 1.55039 2.96915 3.27783 3.29046 3.34628 3.36079 3.63559 4.23858 4.37816 4.42895 4.55327 4.68063 4.78123 4.96927 5.23262 5.27576 5.35690 5.49165 5.54934 5.65315 5.71224 5.80419 5.92649 6.10963 6.12600 6.38785 6.56044 6.99529 7.45164 7.46914 7.86910 7.89111 8.18931 8.26638 8.79549 8.95533 9.52480 11.01723 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.005692 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.739998 B = 4917.985024 C = 5333.426997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.101 3.899 3 N -0.584 5.584 4 C 0.247 3.753 5 C -0.532 4.532 6 H 0.056 0.944 7 C 0.063 3.937 8 N -0.891 5.891 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.544 3.456 14 O -0.498 6.498 15 C -0.040 4.040 16 C -0.094 4.094 17 C -0.072 4.072 18 C -0.114 4.114 19 C -0.061 4.061 20 C -0.018 4.018 21 N 0.019 4.981 22 O -0.181 6.181 23 O -0.108 6.108 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 -11.385 15.172 19.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 N -0.315 5.315 4 C 0.129 3.871 5 C -0.571 4.571 6 H 0.074 0.926 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.327 3.673 14 O -0.372 6.372 15 C -0.045 4.045 16 C -0.113 4.113 17 C -0.090 4.090 18 C -0.133 4.133 19 C -0.080 4.080 20 C -0.101 4.101 21 N 0.540 4.460 22 O -0.390 6.390 23 O -0.333 6.333 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.276 -11.175 15.193 19.339 hybrid contribution 0.743 0.049 -0.307 0.806 sum -3.533 -11.126 14.886 18.917 Atomic orbital electron populations 1.22195 0.96780 1.01400 1.02101 1.21543 0.93547 0.84284 1.02936 1.48157 1.62652 1.12996 1.07728 1.19375 0.95416 0.94804 0.77520 1.21366 0.95278 1.33846 1.06606 0.92561 1.24927 0.98144 0.94855 0.96012 1.69924 1.36168 1.34357 1.12440 0.86565 0.84953 0.78242 0.77670 1.20284 1.21101 1.20204 1.17732 0.79970 0.86682 0.82874 1.90837 1.46349 1.14117 1.85900 1.20427 0.92558 0.94857 0.96660 1.21436 0.99131 0.93353 0.97333 1.21557 0.96313 0.98363 0.92798 1.21277 0.94796 0.96492 1.00735 1.20999 0.99672 0.94015 0.93346 1.21139 0.95903 0.94351 0.98740 1.43592 1.00500 1.01258 1.00608 1.94470 1.18820 1.72519 1.53154 1.94775 1.76416 1.49032 1.13106 0.91546 0.91952 0.94254 0.89150 0.91936 0.94673 0.93133 0.92543 0.82935 0.83620 0.83529 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.20 37.16 0.38 -2.05 16 2 C 0.10 1.63 5.92 -4.04 -0.02 1.61 16 3 N -0.58 -12.42 2.47 -176.18 -0.43 -12.85 16 4 C 0.25 6.44 5.18 -5.19 -0.03 6.42 16 5 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 6 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 C 0.54 11.75 5.46 -12.33 -0.07 11.69 16 14 O -0.50 -13.04 14.67 -18.20 -0.27 -13.31 16 15 C -0.04 -0.66 4.60 -104.97 -0.48 -1.14 16 16 C -0.09 -1.13 7.84 -39.19 -0.31 -1.43 16 17 C -0.07 -0.59 10.03 -39.64 -0.40 -0.98 16 18 C -0.11 -0.88 10.04 -39.49 -0.40 -1.28 16 19 C -0.06 -0.67 9.55 -39.64 -0.38 -1.04 16 20 C -0.02 -0.28 6.87 -79.55 -0.55 -0.82 16 21 N 0.02 0.36 4.45 34.15 0.15 0.51 16 22 O -0.18 -3.21 18.46 -29.46 -0.54 -3.75 16 23 O -0.11 -2.40 15.18 -36.91 -0.56 -2.96 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.60 8.07 -51.93 -0.42 0.19 16 27 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 28 H 0.06 0.84 5.37 -51.93 -0.28 0.56 16 29 H 0.04 0.92 8.07 -51.93 -0.42 0.51 16 30 H 0.05 1.51 7.35 -51.93 -0.38 1.13 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.15 1.74 7.96 -52.49 -0.42 1.32 16 33 H 0.15 0.67 8.06 -52.48 -0.42 0.24 16 34 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.15 1.39 7.62 -52.49 -0.40 0.99 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -34.63 310.92 -7.89 -42.52 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -3.97 Total: -3.30 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.67 Total: -2.42 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.45 Total: -37.87 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -1.37 Total: -20.02 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.63 -7.89 -42.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.334 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds