Wall clock time and date at job start Tue Mar 31 2020 01:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47086 * 2 1 4 4 C 1.46498 * 120.00039 * 264.98254 * 3 2 1 5 5 C 1.50702 * 109.46897 * 269.99903 * 4 3 2 6 6 H 1.07999 * 119.99985 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00003 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00178 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99800 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47393 * 60.00088 * 9 7 5 11 11 H 1.48502 * 109.47111 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47295 * 299.99744 * 9 7 5 13 13 C 1.34775 * 120.00279 * 84.97903 * 3 2 1 14 14 O 1.21550 * 120.00331 * 185.55675 * 13 3 2 15 15 C 1.47849 * 119.99802 * 5.55605 * 13 3 2 16 16 C 1.39596 * 120.14247 * 64.17847 * 15 13 3 17 17 C 1.37936 * 119.85144 * 180.02562 * 16 15 13 18 18 C 1.38376 * 120.14897 * 359.72317 * 17 16 15 19 19 C 1.38345 * 120.28823 * 0.55234 * 18 17 16 20 20 C 1.37976 * 120.14158 * 359.44812 * 19 18 17 21 21 N 1.48020 * 120.06940 * 180.29701 * 20 19 18 22 22 O 1.21797 * 120.00221 * 355.28139 * 21 20 19 23 23 O 1.21804 * 119.99976 * 175.28301 * 21 20 19 24 24 H 1.09006 * 109.46684 * 60.00328 * 1 2 3 25 25 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47401 * 300.00046 * 1 2 3 27 27 H 1.09000 * 109.47215 * 239.99953 * 2 1 3 28 28 H 1.09001 * 109.46760 * 120.00155 * 2 1 3 29 29 H 1.08996 * 109.47576 * 29.99603 * 4 3 2 30 30 H 1.08992 * 109.47575 * 149.99988 * 4 3 2 31 31 H 0.96995 * 119.99897 * 179.97438 * 8 7 5 32 32 H 1.08002 * 120.07560 * 359.97438 * 16 15 13 33 33 H 1.08009 * 119.92384 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.86025 * 180.30267 * 18 17 16 35 35 H 1.08002 * 119.92396 * 179.72818 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3671 2.0348 -1.2638 5 6 3.8211 1.7871 -1.5729 6 1 4.4251 1.2018 -0.8954 7 6 4.3804 2.3078 -2.7206 8 7 3.6449 3.0202 -3.5459 9 14 6.1826 2.0002 -3.1039 10 1 6.4218 0.5392 -3.2193 11 1 6.5360 2.6618 -4.3856 12 1 7.0226 2.5547 -2.0121 13 6 2.1467 2.0506 1.1627 14 8 2.4545 3.2265 1.1562 15 6 1.9130 1.3547 2.4460 16 6 2.7470 0.3055 2.8365 17 6 2.5232 -0.3399 4.0348 18 6 1.4783 0.0542 4.8519 19 6 0.6447 1.0895 4.4683 20 6 0.8576 1.7434 3.2721 21 7 -0.0313 2.8552 2.8663 22 8 -1.0022 3.1377 3.5453 23 8 0.2082 3.4877 1.8532 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7509 1.6279 -2.0656 30 1 2.1913 3.1071 -1.1790 31 1 4.0384 3.3868 -4.3530 32 1 3.5651 -0.0007 2.2013 33 1 3.1675 -1.1521 4.3378 34 1 1.3104 -0.4512 5.7915 35 1 -0.1717 1.3894 5.1086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454235.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:27 Heat of formation + Delta-G solvation = -26.710132 kcal Electronic energy + Delta-G solvation = -22135.836172 eV Core-core repulsion = 18715.800586 eV Total energy + Delta-G solvation = -3420.035585 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.34090 -41.31205 -39.57685 -37.65845 -37.05669 -34.96306 -33.11013 -32.71152 -31.75416 -29.21284 -27.71600 -25.70824 -24.78398 -23.80921 -23.41649 -21.10532 -19.94737 -19.45243 -18.70545 -18.63062 -18.28893 -17.48074 -16.79839 -16.57578 -16.21523 -15.64905 -15.44199 -14.87093 -14.70004 -14.31613 -14.11557 -13.72533 -13.46309 -13.36271 -13.17398 -12.84667 -12.72284 -12.65050 -12.58660 -12.30449 -12.25309 -12.17676 -12.04611 -11.76379 -10.91748 -10.66041 -10.64815 -10.32683 -9.54073 -8.23173 -6.39794 -1.35047 -0.23980 0.24610 0.37541 1.36464 1.41846 1.49113 1.62853 2.06263 2.29207 2.40614 3.06081 3.23160 3.30803 3.69384 3.90676 3.92932 3.96365 4.09042 4.23709 4.40781 4.53225 4.73180 4.74314 4.78143 4.94286 4.96279 5.05326 5.11837 5.13606 5.22997 5.49165 5.52206 5.78312 6.01427 6.41293 6.56795 6.69592 7.19376 7.34926 8.84694 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.005692 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.739998 B = 4917.985024 C = 5333.426997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.097 3.903 3 N -0.591 5.591 4 C 0.264 3.736 5 C -0.545 4.545 6 H 0.062 0.938 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.974 3.026 10 H -0.254 1.254 11 H -0.281 1.281 12 H -0.276 1.276 13 C 0.540 3.460 14 O -0.566 6.566 15 C -0.072 4.072 16 C -0.098 4.098 17 C -0.039 4.039 18 C -0.083 4.083 19 C -0.052 4.052 20 C -0.044 4.044 21 N 0.023 4.977 22 O -0.129 6.129 23 O -0.230 6.230 24 H 0.040 0.960 25 H 0.105 0.895 26 H 0.028 0.972 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.022 0.978 30 H -0.007 1.007 31 H 0.268 0.732 32 H 0.156 0.844 33 H 0.200 0.800 34 H 0.205 0.795 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 -16.042 19.161 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 N -0.322 5.322 4 C 0.144 3.856 5 C -0.583 4.583 6 H 0.080 0.920 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.798 3.202 10 H -0.178 1.178 11 H -0.206 1.206 12 H -0.202 1.202 13 C 0.326 3.674 14 O -0.445 6.445 15 C -0.076 4.076 16 C -0.117 4.117 17 C -0.056 4.056 18 C -0.101 4.101 19 C -0.071 4.071 20 C -0.128 4.128 21 N 0.537 4.463 22 O -0.357 6.357 23 O -0.427 6.427 24 H 0.059 0.941 25 H 0.124 0.876 26 H 0.047 0.953 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.040 0.960 30 H 0.011 0.989 31 H 0.076 0.924 32 H 0.174 0.826 33 H 0.218 0.782 34 H 0.222 0.778 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.151 -15.824 18.993 24.921 hybrid contribution 0.274 1.344 -1.214 1.832 sum -2.877 -14.480 17.779 23.109 Atomic orbital electron populations 1.22128 0.95606 1.03490 1.00345 1.21853 0.94502 0.81527 1.04649 1.48125 1.62820 1.14933 1.06330 1.18758 0.95192 0.91922 0.79775 1.21659 0.95840 1.33955 1.06877 0.91961 1.25965 1.03396 0.94294 0.95724 1.70082 1.38518 1.35358 1.12988 0.85376 0.78283 0.79302 0.77284 1.17845 1.20608 1.20170 1.18543 0.78015 0.86116 0.84677 1.90767 1.49101 1.17282 1.87306 1.20004 0.95603 0.97524 0.94482 1.21671 0.98291 0.92310 0.99438 1.22181 0.95935 0.97612 0.89920 1.22004 0.92268 0.93931 1.01906 1.21531 1.00723 0.93824 0.91060 1.21415 0.96116 0.94347 1.00895 1.44148 1.00601 1.01720 0.99847 1.94365 1.18426 1.71473 1.51482 1.94830 1.78821 1.52983 1.16096 0.94090 0.87648 0.95317 0.89254 0.88158 0.96038 0.98924 0.92366 0.82623 0.78247 0.77782 0.80521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.66 10.20 71.98 0.73 -3.93 16 2 C 0.10 3.16 5.92 86.38 0.51 3.67 16 3 N -0.59 -27.14 2.47 -829.59 -2.05 -29.18 16 4 C 0.26 15.15 5.18 85.63 0.44 15.59 16 5 C -0.54 -31.77 9.39 25.60 0.24 -31.53 16 6 H 0.06 3.46 7.81 -2.91 -0.02 3.43 16 7 C 0.01 0.31 5.46 84.66 0.46 0.77 16 8 N -0.93 -57.89 13.29 21.45 0.28 -57.60 16 9 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 10 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 13 C 0.54 25.26 5.46 86.79 0.47 25.73 16 14 O -0.57 -33.17 14.67 18.61 0.27 -32.90 16 15 C -0.07 -2.35 4.60 -20.09 -0.09 -2.44 16 16 C -0.10 -2.03 7.84 22.53 0.18 -1.86 16 17 C -0.04 -0.35 10.03 22.23 0.22 -0.12 16 18 C -0.08 -0.63 10.04 22.33 0.22 -0.40 16 19 C -0.05 -0.89 9.55 22.23 0.21 -0.67 16 20 C -0.04 -1.33 6.87 36.63 0.25 -1.08 16 21 N 0.02 0.91 4.45 -45.85 -0.20 0.71 16 22 O -0.13 -4.54 18.46 18.89 0.35 -4.19 16 23 O -0.23 -11.54 15.18 26.00 0.39 -11.15 16 24 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.03 0.90 8.07 -2.39 -0.02 0.88 16 27 H 0.09 2.91 8.03 -2.39 -0.02 2.89 16 28 H 0.10 2.49 5.37 -2.39 -0.01 2.48 16 29 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 30 H -0.01 -0.50 7.35 -2.39 -0.02 -0.52 16 31 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 32 H 0.16 3.09 7.96 -2.91 -0.02 3.07 16 33 H 0.20 -0.15 8.06 -2.91 -0.02 -0.17 16 34 H 0.21 -0.53 8.06 -2.91 -0.02 -0.55 16 35 H 0.18 2.20 7.62 -2.91 -0.02 2.17 16 Total: -1.00 -90.37 310.92 6.05 -84.32 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: 1.11 Total: -0.53 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 3.86 Total: 3.73 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -1.96 Total: -86.08 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: 1.02 Total: -48.24 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -90.37 6.05 -84.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454235.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.607 kcal (2) G-P(sol) polarization free energy of solvation -90.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds