Wall clock time and date at job start Tue Mar 31 2020 01:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46987 * 2 1 4 4 C 1.46500 * 119.99974 * 278.32400 * 3 2 1 5 5 C 1.50699 * 109.47478 * 270.00222 * 4 3 2 6 6 H 1.08001 * 119.99386 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00431 * 180.02562 * 5 4 3 8 8 N 1.31523 * 120.00024 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00495 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46956 * 59.99495 * 9 7 5 11 11 H 1.48498 * 109.47735 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46987 * 300.00046 * 9 7 5 13 13 C 1.34774 * 119.99884 * 98.32608 * 3 2 1 14 14 O 1.21555 * 119.99672 * 186.35343 * 13 3 2 15 15 C 1.47840 * 120.00141 * 6.35574 * 13 3 2 16 16 C 1.39577 * 120.14482 * 150.52470 * 15 13 3 17 17 C 1.37956 * 119.85218 * 180.02562 * 16 15 13 18 18 C 1.38361 * 120.14833 * 359.97438 * 17 16 15 19 19 N 1.48014 * 119.85781 * 179.97438 * 18 17 16 20 20 O 1.21802 * 119.99924 * 0.02562 * 19 18 17 21 21 O 1.21795 * 120.00178 * 179.72619 * 19 18 17 22 22 C 1.38365 * 120.28994 * 0.26025 * 18 17 16 23 23 C 1.37959 * 120.14489 * 359.48312 * 22 18 17 24 24 H 1.08998 * 109.47179 * 60.00029 * 1 2 3 25 25 H 1.09000 * 109.47247 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47270 * 299.99945 * 1 2 3 27 27 H 1.09004 * 109.46946 * 240.00081 * 2 1 3 28 28 H 1.08998 * 109.47179 * 119.99971 * 2 1 3 29 29 H 1.09002 * 109.46958 * 30.00315 * 4 3 2 30 30 H 1.08998 * 109.46950 * 150.00114 * 4 3 2 31 31 H 0.96997 * 120.00319 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.07333 * 0.02562 * 16 15 13 33 33 H 1.08007 * 119.92661 * 179.97438 * 17 16 15 34 34 H 1.07997 * 119.92329 * 179.72291 * 22 18 17 35 35 H 1.07999 * 120.07586 * 180.23462 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0893 2.1331 -1.2554 5 6 3.4390 1.9223 -1.8916 6 1 4.1709 1.2917 -1.4088 7 6 3.7399 2.5352 -3.0893 8 7 2.8488 3.3036 -3.6770 9 14 5.4127 2.2734 -3.8783 10 1 5.6082 0.8277 -4.1561 11 1 5.4852 3.0366 -5.1501 12 1 6.4750 2.7482 -2.9556 13 6 2.4023 1.9602 1.1549 14 8 2.6973 3.1392 1.1749 15 6 2.4647 1.1614 2.3973 16 6 3.3794 1.4923 3.3982 17 6 3.4328 0.7424 4.5550 18 6 2.5818 -0.3353 4.7243 19 7 2.6450 -1.1358 5.9677 20 8 3.4446 -0.8450 6.8393 21 8 1.8937 -2.0820 6.1217 22 6 1.6760 -0.6717 3.7339 23 6 1.6087 0.0731 2.5747 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.3099 1.7838 -1.9326 30 1 1.9452 3.1942 -1.0520 31 1 3.0603 3.7345 -4.5198 32 1 4.0439 2.3335 3.2675 33 1 4.1405 0.9972 5.3301 34 1 1.0176 -1.5168 3.8705 35 1 0.8986 -0.1881 1.8040 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454241.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:29 Heat of formation + Delta-G solvation = -1.521682 kcal Electronic energy + Delta-G solvation = -21189.671194 eV Core-core repulsion = 17770.727862 eV Total energy + Delta-G solvation = -3418.943332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.32234 -41.76941 -39.55049 -37.72750 -37.42149 -35.11971 -33.33309 -32.76654 -31.58219 -29.55407 -27.84709 -25.36437 -24.65997 -24.12032 -23.40535 -20.84488 -20.49814 -19.80704 -18.73351 -18.65431 -18.40972 -17.60008 -16.62917 -16.57919 -16.42281 -15.77956 -15.39265 -15.17087 -14.58013 -14.38702 -14.04931 -13.81299 -13.62938 -13.33865 -13.13496 -12.77256 -12.70718 -12.57905 -12.44679 -12.31599 -12.31220 -12.23935 -11.96320 -11.78544 -11.03745 -10.68989 -10.65980 -10.38285 -9.60500 -8.26461 -6.41447 -1.46855 -0.17444 0.01208 0.25833 1.36300 1.39469 1.46545 1.55018 2.00412 2.34592 2.37113 3.03992 3.19095 3.29909 3.39556 3.68354 3.76045 3.95371 4.17299 4.25135 4.47292 4.52847 4.56721 4.57766 4.79123 4.89811 4.93839 4.99256 5.02605 5.17330 5.31249 5.37064 5.47727 5.73886 5.99520 6.45214 6.52318 6.67172 7.10209 7.31089 8.80729 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026843 B = 0.004135 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.842232 B = 6769.027893 C = 7163.803388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.062 3.938 3 N -0.585 5.585 4 C 0.260 3.740 5 C -0.549 4.549 6 H 0.055 0.945 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.965 3.035 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.533 3.467 14 O -0.581 6.581 15 C -0.077 4.077 16 C -0.071 4.071 17 C -0.050 4.050 18 C -0.041 4.041 19 N 0.029 4.971 20 O -0.181 6.181 21 O -0.157 6.157 22 C -0.045 4.045 23 C -0.110 4.110 24 H 0.049 0.951 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.031 0.969 30 H 0.003 0.997 31 H 0.268 0.732 32 H 0.153 0.847 33 H 0.175 0.825 34 H 0.189 0.811 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 -11.287 13.108 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.059 4.059 3 N -0.314 5.314 4 C 0.139 3.861 5 C -0.587 4.587 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.565 5.565 9 Si 0.789 3.211 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.322 3.678 14 O -0.463 6.463 15 C -0.081 4.081 16 C -0.091 4.091 17 C -0.069 4.069 18 C -0.124 4.124 19 N 0.547 4.453 20 O -0.393 6.393 21 O -0.375 6.375 22 C -0.064 4.064 23 C -0.128 4.128 24 H 0.068 0.932 25 H 0.129 0.871 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.140 0.860 29 H 0.049 0.951 30 H 0.021 0.979 31 H 0.077 0.923 32 H 0.171 0.829 33 H 0.193 0.807 34 H 0.206 0.794 35 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.795 -10.186 12.320 16.430 hybrid contribution 0.938 0.368 -0.492 1.121 sum -2.857 -9.818 11.828 15.636 Atomic orbital electron populations 1.22298 0.93663 1.04813 1.02550 1.22725 0.96050 0.81667 1.05493 1.48192 1.60885 1.15114 1.07227 1.18832 0.96360 0.91010 0.79891 1.21655 1.00538 1.30191 1.06326 0.92678 1.25804 1.01130 0.94329 0.97482 1.70031 1.36450 1.31627 1.18358 0.85503 0.79077 0.78954 0.77519 1.18512 1.20432 1.20291 1.18704 0.78028 0.86864 0.84236 1.90758 1.51343 1.17795 1.86386 1.20506 0.97577 0.95900 0.94067 1.21306 0.97654 0.99343 0.90764 1.21098 0.96707 0.91000 0.98128 1.21505 1.05614 0.98033 0.87235 1.43808 0.98806 1.00215 1.02469 1.94551 1.33780 1.74275 1.36679 1.94519 1.37972 1.19688 1.85361 1.21330 0.95254 1.00222 0.89557 1.22695 0.99794 0.92289 0.98042 0.93156 0.87102 0.91317 0.90307 0.86042 0.95062 0.97879 0.92291 0.82948 0.80715 0.79377 0.78291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.51 9.13 71.98 0.66 -2.86 16 2 C 0.06 1.63 5.58 86.38 0.48 2.11 16 3 N -0.59 -22.82 2.46 -829.57 -2.04 -24.86 16 4 C 0.26 13.22 5.22 85.63 0.45 13.66 16 5 C -0.55 -30.14 9.39 25.60 0.24 -29.90 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 7 C 0.01 0.68 5.46 84.65 0.46 1.14 16 8 N -0.93 -54.05 13.29 21.45 0.28 -53.76 16 9 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 10 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 13 C 0.53 20.88 7.46 86.79 0.65 21.53 16 14 O -0.58 -28.56 16.25 -3.89 -0.06 -28.63 16 15 C -0.08 -2.11 5.59 -20.09 -0.11 -2.22 16 16 C -0.07 -1.73 9.60 22.53 0.22 -1.51 16 17 C -0.05 -1.00 9.54 22.23 0.21 -0.79 16 18 C -0.04 -0.82 6.86 36.44 0.25 -0.57 16 19 N 0.03 0.68 4.45 -46.32 -0.21 0.48 16 20 O -0.18 -4.57 18.43 18.88 0.35 -4.22 16 21 O -0.16 -3.68 18.43 18.89 0.35 -3.34 16 22 C -0.04 -0.73 9.54 22.23 0.21 -0.52 16 23 C -0.11 -2.10 7.49 22.53 0.17 -1.93 16 24 H 0.05 1.26 7.93 -2.39 -0.02 1.24 16 25 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.25 7.07 -2.39 -0.02 1.23 16 27 H 0.08 2.22 8.13 -2.39 -0.02 2.20 16 28 H 0.12 2.42 4.02 -2.54 -0.01 2.41 16 29 H 0.03 1.60 7.87 -2.39 -0.02 1.58 16 30 H 0.00 0.18 7.34 -2.39 -0.02 0.17 16 31 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.15 3.83 7.92 -2.91 -0.02 3.80 16 33 H 0.18 2.81 7.60 -2.91 -0.02 2.79 16 34 H 0.19 1.94 7.60 -2.91 -0.02 1.92 16 35 H 0.20 3.10 2.52 -2.91 -0.01 3.09 16 Total: -1.00 -71.39 307.29 5.71 -65.68 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.13 Total: 5.29 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 3.88 Total: -1.86 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -1.96 Total: -78.15 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: 0.63 Total: -36.18 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.39 5.71 -65.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454241.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.158 kcal (2) G-P(sol) polarization free energy of solvation -71.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds