Wall clock time and date at job start Tue Mar 31 2020 01:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.46962 * 2 1 4 4 C 1.46493 * 120.00425 * 85.00149 * 3 2 1 5 5 C 1.50706 * 109.47128 * 274.99517 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31514 * 120.00481 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99745 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47209 * 90.00365 * 9 7 5 11 11 H 1.48506 * 109.47294 * 210.00213 * 9 7 5 12 12 H 1.48501 * 109.47275 * 330.00116 * 9 7 5 13 13 S 1.65610 * 119.99659 * 264.99299 * 3 2 1 14 14 O 1.42102 * 106.40166 * 23.54748 * 13 3 2 15 15 O 1.42099 * 106.39688 * 156.46396 * 13 3 2 16 16 N 1.65593 * 107.22016 * 270.00491 * 13 3 2 17 17 C 1.47152 * 120.98055 * 269.71949 * 16 13 3 18 18 C 1.53716 * 108.16243 * 129.43091 * 17 16 13 19 19 O 1.42964 * 109.14471 * 52.53914 * 18 17 16 20 20 C 1.42964 * 114.16620 * 297.28723 * 19 18 17 21 21 C 1.47152 * 120.98249 * 90.00174 * 16 13 3 22 22 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47356 * 300.00755 * 1 2 3 24 24 H 1.09004 * 109.46875 * 60.00137 * 1 2 3 25 25 H 1.09001 * 109.46999 * 239.99295 * 2 1 3 26 26 H 1.09001 * 109.46436 * 119.99603 * 2 1 3 27 27 H 1.09001 * 109.47786 * 154.99790 * 4 3 2 28 28 H 1.08998 * 109.47558 * 34.99653 * 4 3 2 29 29 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.68155 * 249.21005 * 17 16 13 31 31 H 1.08997 * 109.68607 * 9.76496 * 17 16 13 32 32 H 1.08991 * 109.66150 * 292.57016 * 18 17 16 33 33 H 1.09002 * 109.48769 * 172.39638 * 18 17 16 34 34 H 1.09000 * 109.50907 * 302.65632 * 20 19 18 35 35 H 1.08999 * 109.55784 * 182.53493 * 20 19 18 36 36 H 1.08995 * 109.67913 * 350.23209 * 21 16 13 37 37 H 1.08997 * 109.68103 * 110.75601 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 1.2638 5 6 0.8360 2.7289 1.6355 6 1 -0.0225 2.5949 0.9941 7 6 0.7210 3.4631 2.7968 8 7 -0.4330 4.0040 3.1214 9 14 2.2041 3.6884 3.9099 10 1 2.9458 4.9097 3.5052 11 1 1.7503 3.8285 5.3170 12 1 3.0953 2.5064 3.7926 13 16 2.4123 2.1201 -1.4288 14 8 1.6869 1.4413 -2.4449 15 8 2.3058 3.5185 -1.1999 16 7 4.0145 1.8135 -1.7138 17 6 5.0594 2.7249 -1.2210 18 6 6.1097 1.8893 -0.4718 19 8 6.5463 0.8201 -1.3144 20 6 5.5155 -0.1056 -1.6669 21 6 4.4350 0.6249 -2.4725 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8898 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.9080 2.8918 1.1512 28 1 2.4690 1.4184 2.0480 29 1 -0.5139 4.5202 3.9386 30 1 5.5260 3.2375 -2.0623 31 1 4.6190 3.4563 -0.5434 32 1 5.6715 1.4800 0.4383 33 1 6.9603 2.5204 -0.2142 34 1 5.0750 -0.5223 -0.7610 35 1 5.9377 -0.9098 -2.2695 36 1 3.5809 -0.0351 -2.6238 37 1 4.8392 0.9296 -3.4378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:08 Heat of formation + Delta-G solvation = -110.499859 kcal Electronic energy + Delta-G solvation = -21721.147723 eV Core-core repulsion = 18432.922694 eV Total energy + Delta-G solvation = -3288.225029 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.20961 -36.83116 -36.23023 -35.29042 -34.74399 -32.54947 -31.44499 -30.12520 -27.31969 -26.98747 -24.26691 -22.58285 -21.88958 -21.32164 -18.75674 -17.43944 -17.23632 -16.65250 -16.43683 -15.80759 -15.37932 -15.11167 -15.01085 -14.24218 -14.15235 -13.74464 -13.27031 -12.92814 -12.63908 -12.61028 -12.18040 -11.98048 -11.84526 -11.61107 -11.52576 -11.43368 -11.33928 -11.12672 -11.07138 -10.58675 -10.54030 -10.42642 -10.28309 -10.10604 -9.47375 -8.84326 -8.62006 -8.19460 -6.10753 -4.09892 0.99221 3.21905 3.25953 3.27713 3.32561 3.72205 3.92932 4.34797 4.58320 4.76994 4.80342 5.00864 5.08457 5.17967 5.19366 5.27932 5.36095 5.45514 5.49526 5.67219 5.76841 5.84909 5.88718 6.04081 6.09426 6.31259 6.46872 6.59880 6.68182 6.97156 6.98957 7.08954 7.36649 7.54600 8.46267 8.94796 9.48048 11.02476 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.007907 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.217344 B = 3540.336022 C = 4177.420378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.136 3.864 3 N -0.988 5.988 4 C 0.229 3.771 5 C -0.529 4.529 6 H 0.082 0.918 7 C 0.073 3.927 8 N -0.894 5.894 9 Si 0.870 3.130 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 S 2.778 3.222 14 O -0.987 6.987 15 O -0.957 6.957 16 N -1.017 6.017 17 C 0.088 3.912 18 C 0.047 3.953 19 O -0.381 6.381 20 C 0.048 3.952 21 C 0.089 3.911 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.025 0.975 28 H 0.032 0.968 29 H 0.265 0.735 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.577 -8.859 -7.324 17.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 N -0.829 5.829 4 C 0.105 3.895 5 C -0.568 4.568 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.697 3.303 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.787 3.213 14 O -0.970 6.970 15 O -0.941 6.941 16 N -0.856 5.856 17 C -0.038 4.038 18 C -0.031 4.031 19 O -0.299 6.299 20 C -0.030 4.030 21 C -0.037 4.037 22 H 0.070 0.930 23 H 0.102 0.898 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.091 -8.248 -7.798 16.584 hybrid contribution 0.565 0.086 1.048 1.194 sum 12.655 -8.162 -6.749 16.502 Atomic orbital electron populations 1.22262 0.95822 1.00956 1.04184 1.20987 0.95318 0.81770 1.00946 1.57645 1.78395 1.23183 1.23661 1.19429 0.98134 0.91074 0.80845 1.21404 0.95785 1.31918 1.07734 0.90029 1.24875 0.95692 0.94938 0.97469 1.69888 1.24018 1.34394 1.24938 0.86957 0.83612 0.79248 0.80503 1.19829 1.20985 1.19027 1.02200 0.72312 0.73727 0.73029 1.93541 1.69749 1.76390 1.57367 1.93630 1.84917 1.30024 1.85536 1.58672 1.25226 1.33542 1.68152 1.22136 0.89774 0.92200 0.99716 1.23062 0.98191 0.89188 0.92659 1.87916 1.34478 1.38293 1.69195 1.22954 0.89380 0.91596 0.99108 1.22007 0.99248 0.87150 0.95304 0.93020 0.89819 0.92722 0.92183 0.91134 0.95691 0.94980 0.92526 0.90534 0.88123 0.92225 0.87841 0.92462 0.88000 0.88675 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.83 37.16 0.37 -2.71 16 2 C 0.14 2.24 6.09 -4.04 -0.02 2.22 16 3 N -0.99 -19.31 2.86 -115.67 -0.33 -19.64 16 4 C 0.23 5.15 4.19 -5.19 -0.02 5.13 16 5 C -0.53 -14.57 8.97 -34.44 -0.31 -14.88 16 6 H 0.08 2.46 7.13 -52.49 -0.37 2.09 16 7 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 9 Si 0.87 20.51 27.47 -169.99 -4.67 15.84 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -5.76 6.53 56.52 0.37 -5.39 16 13 S 2.78 53.78 6.02 -107.50 -0.65 53.13 16 14 O -0.99 -20.03 15.91 -57.17 -0.91 -20.94 16 15 O -0.96 -22.29 15.90 -57.17 -0.91 -23.20 16 16 N -1.02 -15.05 3.39 -112.82 -0.38 -15.44 16 17 C 0.09 1.16 6.60 -3.31 -0.02 1.14 16 18 C 0.05 0.54 7.00 37.53 0.26 0.80 16 19 O -0.38 -4.59 10.74 -35.23 -0.38 -4.97 16 20 C 0.05 0.49 6.98 37.31 0.26 0.75 16 21 C 0.09 1.05 6.57 -3.53 -0.02 1.02 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.08 1.72 6.59 -51.93 -0.34 1.38 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.06 0.83 7.61 -51.93 -0.40 0.44 16 26 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 27 H 0.03 0.56 7.05 -51.93 -0.37 0.20 16 28 H 0.03 0.69 7.04 -51.93 -0.37 0.32 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.44 7.24 -51.93 -0.38 1.06 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 1.07 7.25 -51.93 -0.38 0.69 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 310.06 15.07 4.67 4.67 Total: -1.00 -33.96 310.06 -7.95 -41.91 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.56 Total: -0.59 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 0.39 Total: -4.55 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.06 Total: -61.31 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -2.20 Total: -49.12 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Atomic # 16 Polarization: 53.78 SS G_CDS: -0.65 Total: 53.13 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.96 -7.95 -41.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.585 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds