Wall clock time and date at job start Tue Mar 31 2020 01:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.46962 * 2 1 4 4 C 1.46493 * 120.00425 * 85.00149 * 3 2 1 5 5 C 1.50706 * 109.47128 * 274.99517 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31514 * 120.00481 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99745 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47209 * 90.00365 * 9 7 5 11 11 H 1.48506 * 109.47294 * 210.00213 * 9 7 5 12 12 H 1.48501 * 109.47275 * 330.00116 * 9 7 5 13 13 S 1.65610 * 119.99659 * 264.99299 * 3 2 1 14 14 O 1.42102 * 106.40166 * 23.54748 * 13 3 2 15 15 O 1.42099 * 106.39688 * 156.46396 * 13 3 2 16 16 N 1.65593 * 107.22016 * 270.00491 * 13 3 2 17 17 C 1.47152 * 120.98055 * 269.71949 * 16 13 3 18 18 C 1.53716 * 108.16243 * 129.43091 * 17 16 13 19 19 O 1.42964 * 109.14471 * 52.53914 * 18 17 16 20 20 C 1.42964 * 114.16620 * 297.28723 * 19 18 17 21 21 C 1.47152 * 120.98249 * 90.00174 * 16 13 3 22 22 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47356 * 300.00755 * 1 2 3 24 24 H 1.09004 * 109.46875 * 60.00137 * 1 2 3 25 25 H 1.09001 * 109.46999 * 239.99295 * 2 1 3 26 26 H 1.09001 * 109.46436 * 119.99603 * 2 1 3 27 27 H 1.09001 * 109.47786 * 154.99790 * 4 3 2 28 28 H 1.08998 * 109.47558 * 34.99653 * 4 3 2 29 29 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.68155 * 249.21005 * 17 16 13 31 31 H 1.08997 * 109.68607 * 9.76496 * 17 16 13 32 32 H 1.08991 * 109.66150 * 292.57016 * 18 17 16 33 33 H 1.09002 * 109.48769 * 172.39638 * 18 17 16 34 34 H 1.09000 * 109.50907 * 302.65632 * 20 19 18 35 35 H 1.08999 * 109.55784 * 182.53493 * 20 19 18 36 36 H 1.08995 * 109.67913 * 350.23209 * 21 16 13 37 37 H 1.08997 * 109.68103 * 110.75601 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 1.2638 5 6 0.8360 2.7289 1.6355 6 1 -0.0225 2.5949 0.9941 7 6 0.7210 3.4631 2.7968 8 7 -0.4330 4.0040 3.1214 9 14 2.2041 3.6884 3.9099 10 1 2.9458 4.9097 3.5052 11 1 1.7503 3.8285 5.3170 12 1 3.0953 2.5064 3.7926 13 16 2.4123 2.1201 -1.4288 14 8 1.6869 1.4413 -2.4449 15 8 2.3058 3.5185 -1.1999 16 7 4.0145 1.8135 -1.7138 17 6 5.0594 2.7249 -1.2210 18 6 6.1097 1.8893 -0.4718 19 8 6.5463 0.8201 -1.3144 20 6 5.5155 -0.1056 -1.6669 21 6 4.4350 0.6249 -2.4725 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8898 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.9080 2.8918 1.1512 28 1 2.4690 1.4184 2.0480 29 1 -0.5139 4.5202 3.9386 30 1 5.5260 3.2375 -2.0623 31 1 4.6190 3.4563 -0.5434 32 1 5.6715 1.4800 0.4383 33 1 6.9603 2.5204 -0.2142 34 1 5.0750 -0.5223 -0.7610 35 1 5.9377 -0.9098 -2.2695 36 1 3.5809 -0.0351 -2.6238 37 1 4.8392 0.9296 -3.4378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:08 Heat of formation + Delta-G solvation = -137.841673 kcal Electronic energy + Delta-G solvation = -21722.333353 eV Core-core repulsion = 18432.922694 eV Total energy + Delta-G solvation = -3289.410659 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.11792 -38.44306 -37.80645 -36.91981 -35.78266 -34.60596 -32.34280 -31.74079 -29.13304 -28.00565 -25.18013 -24.32229 -23.43834 -22.37604 -20.03857 -19.11138 -18.85291 -18.38874 -17.54748 -17.03028 -16.49510 -16.27708 -15.98170 -15.88184 -15.30343 -15.23810 -14.77486 -14.57158 -14.40911 -13.87644 -13.62986 -13.30099 -13.20363 -13.11894 -13.07239 -12.88828 -12.74815 -12.74254 -12.31382 -12.21828 -11.98936 -11.80640 -11.53938 -11.41842 -11.26142 -10.75063 -9.88116 -9.81272 -8.25488 -6.30377 -0.49023 1.37279 1.40993 1.49026 1.92161 2.37034 2.48180 2.93168 3.07587 3.25289 3.67943 3.84351 3.92151 4.19034 4.20160 4.25012 4.39541 4.42187 4.46221 4.64683 4.68336 4.68652 4.79593 4.85135 4.91844 4.98920 5.04207 5.09991 5.36964 5.43380 5.51009 5.55045 5.84038 6.17211 6.34138 6.73558 7.31792 8.91662 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.007907 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.217344 B = 3540.336022 C = 4177.420378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.127 3.873 3 N -0.993 5.993 4 C 0.236 3.764 5 C -0.534 4.534 6 H 0.033 0.967 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.940 3.060 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.226 1.226 13 S 2.788 3.212 14 O -1.003 7.003 15 O -1.007 7.007 16 N -1.009 6.009 17 C 0.079 3.921 18 C 0.051 3.949 19 O -0.389 6.389 20 C 0.048 3.952 21 C 0.080 3.920 22 H 0.087 0.913 23 H 0.044 0.956 24 H 0.030 0.970 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.032 0.968 28 H 0.056 0.944 29 H 0.266 0.734 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.128 0.872 34 H 0.062 0.938 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.953 -10.872 -7.217 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.002 3.998 3 N -0.833 5.833 4 C 0.111 3.889 5 C -0.574 4.574 6 H 0.052 0.948 7 C -0.193 4.193 8 N -0.591 5.591 9 Si 0.762 3.238 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.148 1.148 13 S 2.798 3.202 14 O -0.987 6.987 15 O -0.991 6.991 16 N -0.851 5.851 17 C -0.046 4.046 18 C -0.027 4.027 19 O -0.307 6.307 20 C -0.030 4.030 21 C -0.044 4.044 22 H 0.106 0.894 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.145 0.855 34 H 0.080 0.920 35 H 0.150 0.850 36 H 0.119 0.881 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.467 -10.300 -7.720 20.122 hybrid contribution -0.554 0.667 0.868 1.227 sum 14.913 -9.633 -6.852 19.030 Atomic orbital electron populations 1.22229 0.97436 1.02338 1.01079 1.21307 0.94036 0.80634 1.03791 1.57580 1.79139 1.24165 1.22452 1.19222 0.95210 0.91763 0.82697 1.21727 0.96772 1.31930 1.06939 0.94831 1.25927 0.99215 0.94585 0.99528 1.70075 1.27039 1.36081 1.25915 0.85841 0.79692 0.80696 0.77581 1.19457 1.20936 1.14841 1.01607 0.73276 0.72535 0.72762 1.93506 1.71089 1.76310 1.57753 1.93560 1.86188 1.33191 1.86118 1.58268 1.23598 1.34964 1.68319 1.22366 0.89606 0.92288 1.00342 1.23113 0.98324 0.89182 0.92076 1.87917 1.35130 1.38491 1.69211 1.23125 0.88676 0.91621 0.99553 1.22350 1.00151 0.86128 0.95815 0.89389 0.93636 0.95052 0.88922 0.88542 0.95052 0.92578 0.92557 0.89179 0.89605 0.92297 0.85468 0.91962 0.85007 0.88111 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.10 9.83 71.98 0.71 -5.39 16 2 C 0.13 3.93 6.09 86.38 0.53 4.46 16 3 N -0.99 -37.87 2.86 -519.86 -1.48 -39.36 16 4 C 0.24 10.37 4.19 85.64 0.36 10.73 16 5 C -0.53 -30.24 8.97 25.60 0.23 -30.01 16 6 H 0.03 2.16 7.13 -2.91 -0.02 2.14 16 7 C 0.00 0.27 5.47 84.65 0.46 0.74 16 8 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 9 Si 0.94 41.71 27.47 68.60 1.88 43.60 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 H -0.23 -8.52 6.53 99.48 0.65 -7.87 16 13 S 2.79 106.90 6.02 -56.49 -0.34 106.56 16 14 O -1.00 -40.39 15.91 -128.00 -2.04 -42.43 16 15 O -1.01 -47.97 15.90 -128.00 -2.04 -50.01 16 16 N -1.01 -27.81 3.39 -510.85 -1.73 -29.55 16 17 C 0.08 1.93 6.60 86.50 0.57 2.50 16 18 C 0.05 1.00 7.00 72.22 0.51 1.50 16 19 O -0.39 -7.83 10.74 -148.98 -1.60 -9.43 16 20 C 0.05 0.79 6.98 72.08 0.50 1.29 16 21 C 0.08 1.63 6.57 86.35 0.57 2.20 16 22 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 23 H 0.04 1.94 6.59 -2.39 -0.02 1.93 16 24 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.09 2.27 7.61 -2.39 -0.02 2.26 16 26 H 0.10 2.51 8.00 -2.39 -0.02 2.49 16 27 H 0.03 1.36 7.05 -2.39 -0.02 1.34 16 28 H 0.06 2.22 7.04 -2.39 -0.02 2.21 16 29 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.09 2.36 7.24 -2.39 -0.02 2.34 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.10 1.94 7.25 -2.39 -0.02 1.92 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -77.38 310.06 -1.62 -79.00 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.00 Total: 13.09 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 4.43 Total: -11.98 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -2.92 Total: -128.40 kcal Atomic # 8 Polarization: -96.20 SS G_CDS: -5.67 Total: -101.87 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.88 Total: 43.60 kcal Atomic # 16 Polarization: 106.90 SS G_CDS: -0.34 Total: 106.56 kcal Total: -77.38 -1.62 -79.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.844 kcal (2) G-P(sol) polarization free energy of solvation -77.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds