Wall clock time and date at job start Tue Mar 31 2020 00:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47111 * 2 1 4 4 N 1.46505 * 109.46915 * 180.02562 * 3 2 1 5 5 C 1.33326 * 120.00064 * 263.85800 * 4 3 2 6 6 H 1.08000 * 120.00021 * 136.89293 * 5 4 3 7 7 C 1.46780 * 120.00133 * 316.88988 * 5 4 3 8 8 N 1.29317 * 120.00056 * 170.47264 * 7 5 4 9 9 Si 1.86800 * 119.99973 * 350.46713 * 7 5 4 10 10 H 1.48506 * 109.47062 * 94.74814 * 9 7 5 11 11 H 1.48506 * 109.47349 * 214.74282 * 9 7 5 12 12 H 1.48500 * 109.47462 * 334.74605 * 9 7 5 13 13 C 1.34777 * 119.99867 * 83.85946 * 4 3 2 14 14 O 1.21478 * 119.99982 * 5.45149 * 13 4 3 15 15 C 1.47697 * 120.00193 * 185.44941 * 13 4 3 16 16 C 1.39682 * 120.14829 * 321.68078 * 15 13 4 17 17 C 1.37915 * 119.84145 * 179.74258 * 16 15 13 18 18 C 1.38399 * 120.15148 * 0.53398 * 17 16 15 19 19 C 1.38354 * 120.31182 * 359.71584 * 18 17 16 20 20 N 1.48018 * 119.92649 * 180.02562 * 19 18 17 21 21 O 1.31703 * 119.99890 * 180.02562 * 20 19 18 22 22 O 1.31697 * 119.99825 * 0.02562 * 20 19 18 23 23 C 1.37955 * 120.15337 * 0.02753 * 19 18 17 24 24 H 1.08997 * 109.47348 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46691 * 300.00042 * 1 2 3 26 26 H 1.09000 * 109.47238 * 59.98877 * 1 2 3 27 27 H 1.09000 * 109.46858 * 240.00694 * 2 1 3 28 28 H 1.08992 * 109.47480 * 120.00525 * 2 1 3 29 29 H 1.08994 * 109.47778 * 300.00255 * 3 2 1 30 30 H 1.08998 * 109.47179 * 60.00769 * 3 2 1 31 31 H 0.97008 * 120.00126 * 180.02562 * 8 7 5 32 32 H 1.07994 * 120.08326 * 359.97438 * 16 15 13 33 33 H 1.07998 * 119.92333 * 180.25331 * 17 16 15 34 34 H 1.08004 * 119.84414 * 179.74482 * 18 17 16 35 35 H 1.07996 * 120.08015 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1722 1.5658 1.1471 6 1 5.0336 0.9438 1.3406 7 6 3.7360 2.5470 2.1478 8 7 4.2618 2.5432 3.3292 9 14 2.4214 3.8014 1.7147 10 1 1.0929 3.2943 2.1431 11 1 2.7102 5.0815 2.4100 12 1 2.4156 4.0258 0.2467 13 6 4.1784 1.3177 -1.1614 14 8 3.5747 1.3050 -2.2155 15 6 5.6504 1.1966 -1.1520 16 6 6.4098 1.9405 -0.2459 17 6 7.7835 1.8185 -0.2391 18 6 8.4105 0.9698 -1.1346 19 6 7.6649 0.2339 -2.0384 20 7 8.3442 -0.6716 -2.9920 21 8 7.6359 -1.3724 -3.8532 22 8 9.6569 -0.7765 -2.9792 23 6 6.2896 0.3421 -2.0528 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 3.9732 3.1914 3.9907 32 1 5.9221 2.6068 0.4502 33 1 8.3716 2.3900 0.4637 34 1 9.4868 0.8812 -1.1277 35 1 5.7088 -0.2325 -2.7590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044372764.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:36 Heat of formation + Delta-G solvation = 25.512156 kcal Electronic energy + Delta-G solvation = -21507.915102 eV Core-core repulsion = 18090.144045 eV Total energy + Delta-G solvation = -3417.771057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.25567 -39.00576 -37.63250 -35.58040 -34.21922 -33.39544 -32.38049 -31.46103 -31.07662 -26.70865 -26.07694 -25.12247 -23.09063 -22.08120 -21.38733 -19.80184 -18.62286 -17.86612 -17.15116 -16.39097 -15.92428 -15.76117 -15.68329 -14.81940 -14.51421 -14.37136 -13.97161 -13.89500 -13.35102 -12.88746 -12.70093 -12.42045 -11.95032 -11.85679 -11.73165 -11.56751 -11.20799 -11.14765 -11.12663 -10.91377 -10.62413 -10.50763 -10.33775 -9.98729 -9.58237 -9.24228 -9.13631 -8.93857 -8.13959 -6.90692 -4.33431 -0.43698 1.00160 1.34644 1.42400 2.78275 2.95425 3.00099 3.20006 3.75007 3.80198 4.05936 4.48101 4.63440 4.76945 5.12354 5.20024 5.27761 5.36264 5.43372 5.47743 5.69950 5.83525 5.87007 5.92214 6.04823 6.14436 6.19099 6.29682 6.34501 6.48217 6.58413 6.67126 6.74490 6.93607 6.98383 7.66001 7.91222 8.43243 9.00238 9.45717 10.12359 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.005848 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.451748 B = 4787.164317 C = 5767.062349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.099 3.901 4 N -0.423 5.423 5 C -0.402 4.402 6 H 0.106 0.894 7 C 0.077 3.923 8 N -0.818 5.818 9 Si 0.881 3.119 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.254 1.254 13 C 0.504 3.496 14 O -0.587 6.587 15 C -0.089 4.089 16 C 0.002 3.998 17 C -0.137 4.137 18 C -0.046 4.046 19 C -0.025 4.025 20 N -0.008 5.008 21 O -0.182 6.182 22 O -0.188 6.188 23 C -0.019 4.019 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.287 0.713 32 H 0.178 0.822 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.004 1.017 -1.059 1.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C -0.023 4.023 4 N -0.139 5.139 5 C -0.530 4.530 6 H 0.123 0.877 7 C -0.140 4.140 8 N -0.447 5.447 9 Si 0.708 3.292 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.178 1.178 13 C 0.294 3.706 14 O -0.473 6.473 15 C -0.093 4.093 16 C -0.017 4.017 17 C -0.156 4.156 18 C -0.066 4.066 19 C -0.111 4.111 20 N 0.469 4.531 21 O -0.374 6.374 22 O -0.380 6.380 23 C -0.040 4.040 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.195 0.805 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.408 1.483 -0.912 1.788 hybrid contribution -0.380 0.213 -0.031 0.436 sum 0.028 1.696 -0.943 1.940 Atomic orbital electron populations 1.21708 0.96063 1.01303 1.01491 1.21782 0.95149 0.97626 1.02614 1.21816 0.82518 0.96899 1.01042 1.42332 1.04087 1.61762 1.05729 1.19898 1.16645 1.21978 0.94495 0.87717 1.27047 0.96514 0.96116 0.94356 1.68651 1.39135 1.33152 1.03741 0.86838 0.81342 0.80333 0.80734 1.19403 1.21000 1.17750 1.17929 0.85668 0.82999 0.84019 1.90654 1.69153 1.56578 1.30882 1.19985 0.95553 0.97725 0.96034 1.22721 0.92885 0.93798 0.92279 1.21283 0.95036 0.99794 0.99442 1.21189 1.01390 0.92488 0.91549 1.20137 0.92507 1.00965 0.97532 1.50497 1.02832 0.99456 1.00349 1.96271 1.64258 1.43801 1.33100 1.96227 0.89662 1.73389 1.78703 1.21074 0.90939 0.95202 0.96741 0.92835 0.92968 0.92852 0.91786 0.91318 0.91143 0.91704 0.90092 0.80466 0.83338 0.83285 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.13 -2.36 6.21 -26.73 -0.17 -2.53 16 3 C 0.10 2.00 3.73 -4.04 -0.02 1.98 16 4 N -0.42 -9.14 2.15 -114.38 -0.25 -9.39 16 5 C -0.40 -8.95 6.94 -13.45 -0.09 -9.04 16 6 H 0.11 2.45 6.66 -52.49 -0.35 2.10 16 7 C 0.08 1.72 5.60 -15.16 -0.08 1.64 16 8 N -0.82 -18.96 13.88 56.00 0.78 -18.19 16 9 Si 0.88 17.70 24.80 -169.99 -4.22 13.49 16 10 H -0.27 -5.24 6.93 56.52 0.39 -4.85 16 11 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 12 H -0.25 -5.24 6.87 56.52 0.39 -4.85 16 13 C 0.50 10.92 7.27 -12.40 -0.09 10.83 16 14 O -0.59 -13.95 16.53 5.39 0.09 -13.86 16 15 C -0.09 -1.67 5.38 -104.97 -0.56 -2.24 16 16 C 0.00 0.03 7.82 -39.16 -0.31 -0.28 16 17 C -0.14 -1.84 10.03 -39.64 -0.40 -2.24 16 18 C -0.05 -0.65 9.57 -39.48 -0.38 -1.02 16 19 C -0.02 -0.41 6.88 -80.01 -0.55 -0.96 16 20 N -0.01 -0.14 4.98 33.93 0.17 0.03 16 21 O -0.18 -3.47 19.14 -31.57 -0.60 -4.08 16 22 O -0.19 -3.36 19.14 -31.57 -0.60 -3.96 16 23 C -0.02 -0.34 9.16 -39.16 -0.36 -0.70 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.43 7.54 -51.93 -0.39 1.03 16 30 H 0.07 1.30 3.50 -51.93 -0.18 1.12 16 31 H 0.29 6.16 8.26 -40.82 -0.34 5.83 16 32 H 0.18 3.14 5.97 -52.49 -0.31 2.83 16 33 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.15 1.74 7.57 -52.48 -0.40 1.34 16 35 H 0.15 2.80 7.56 -52.49 -0.40 2.40 16 LS Contribution 305.85 15.07 4.61 4.61 Total: -1.00 -26.01 305.85 -6.38 -32.40 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.72 Total: 5.27 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -2.64 Total: -6.31 kcal Atomic # 7 Polarization: -28.25 SS G_CDS: 0.70 Total: -27.55 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -1.12 Total: -21.90 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -4.22 Total: 13.49 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.01 -6.38 -32.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372764.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.908 kcal (2) G-P(sol) polarization free energy of solvation -26.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds