Wall clock time and date at job start Tue Mar 31 2020 00:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47111 * 2 1 4 4 N 1.46505 * 109.46915 * 180.02562 * 3 2 1 5 5 C 1.33326 * 120.00064 * 263.85800 * 4 3 2 6 6 H 1.08000 * 120.00021 * 136.89293 * 5 4 3 7 7 C 1.46780 * 120.00133 * 316.88988 * 5 4 3 8 8 N 1.29317 * 120.00056 * 170.47264 * 7 5 4 9 9 Si 1.86800 * 119.99973 * 350.46713 * 7 5 4 10 10 H 1.48506 * 109.47062 * 94.74814 * 9 7 5 11 11 H 1.48506 * 109.47349 * 214.74282 * 9 7 5 12 12 H 1.48500 * 109.47462 * 334.74605 * 9 7 5 13 13 C 1.34777 * 119.99867 * 83.85946 * 4 3 2 14 14 O 1.21478 * 119.99982 * 5.45149 * 13 4 3 15 15 C 1.47697 * 120.00193 * 185.44941 * 13 4 3 16 16 C 1.39682 * 120.14829 * 321.68078 * 15 13 4 17 17 C 1.37915 * 119.84145 * 179.74258 * 16 15 13 18 18 C 1.38399 * 120.15148 * 0.53398 * 17 16 15 19 19 C 1.38354 * 120.31182 * 359.71584 * 18 17 16 20 20 N 1.48018 * 119.92649 * 180.02562 * 19 18 17 21 21 O 1.31703 * 119.99890 * 180.02562 * 20 19 18 22 22 O 1.31697 * 119.99825 * 0.02562 * 20 19 18 23 23 C 1.37955 * 120.15337 * 0.02753 * 19 18 17 24 24 H 1.08997 * 109.47348 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46691 * 300.00042 * 1 2 3 26 26 H 1.09000 * 109.47238 * 59.98877 * 1 2 3 27 27 H 1.09000 * 109.46858 * 240.00694 * 2 1 3 28 28 H 1.08992 * 109.47480 * 120.00525 * 2 1 3 29 29 H 1.08994 * 109.47778 * 300.00255 * 3 2 1 30 30 H 1.08998 * 109.47179 * 60.00769 * 3 2 1 31 31 H 0.97008 * 120.00126 * 180.02562 * 8 7 5 32 32 H 1.07994 * 120.08326 * 359.97438 * 16 15 13 33 33 H 1.07998 * 119.92333 * 180.25331 * 17 16 15 34 34 H 1.08004 * 119.84414 * 179.74482 * 18 17 16 35 35 H 1.07996 * 120.08015 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1722 1.5658 1.1471 6 1 5.0336 0.9438 1.3406 7 6 3.7360 2.5470 2.1478 8 7 4.2618 2.5432 3.3292 9 14 2.4214 3.8014 1.7147 10 1 1.0929 3.2943 2.1431 11 1 2.7102 5.0815 2.4100 12 1 2.4156 4.0258 0.2467 13 6 4.1784 1.3177 -1.1614 14 8 3.5747 1.3050 -2.2155 15 6 5.6504 1.1966 -1.1520 16 6 6.4098 1.9405 -0.2459 17 6 7.7835 1.8185 -0.2391 18 6 8.4105 0.9698 -1.1346 19 6 7.6649 0.2339 -2.0384 20 7 8.3442 -0.6716 -2.9920 21 8 7.6359 -1.3724 -3.8532 22 8 9.6569 -0.7765 -2.9792 23 6 6.2896 0.3421 -2.0528 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 1.6767 1.9564 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 3.9732 3.1914 3.9907 32 1 5.9221 2.6068 0.4502 33 1 8.3716 2.3900 0.4637 34 1 9.4868 0.8812 -1.1277 35 1 5.7088 -0.2325 -2.7590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044372764.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:35 Heat of formation + Delta-G solvation = 12.118721 kcal Electronic energy + Delta-G solvation = -21508.495885 eV Core-core repulsion = 18090.144045 eV Total energy + Delta-G solvation = -3418.351840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.72265 -40.53022 -39.04361 -37.27659 -35.64463 -34.93391 -34.02003 -32.80747 -32.41142 -28.14658 -27.46900 -26.82099 -24.49029 -23.41218 -22.81562 -21.39004 -20.17836 -19.25944 -18.73364 -17.86898 -17.37684 -17.25153 -17.16160 -16.34753 -16.09588 -15.83015 -15.47736 -15.17203 -14.77517 -14.49387 -14.17942 -13.83923 -13.45613 -13.31770 -13.13261 -12.94242 -12.70030 -12.55213 -12.54872 -12.31849 -12.13948 -11.95934 -11.91555 -11.55691 -11.24245 -10.77067 -10.54987 -10.35217 -9.85343 -8.63334 -6.09056 -1.84228 -0.32165 -0.02438 0.09476 1.17507 1.32120 1.38876 1.69794 2.10485 2.30394 2.50142 2.81263 3.39080 3.44167 3.82622 3.85109 3.90631 3.96475 4.04989 4.10108 4.33576 4.50412 4.53983 4.56847 4.66138 4.72912 4.86961 5.05846 5.07463 5.15434 5.18020 5.19275 5.38191 5.46535 5.56574 5.94738 6.15295 6.70359 7.28665 7.75600 8.42324 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.005848 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.451748 B = 4787.164317 C = 5767.062349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.093 3.907 4 N -0.429 5.429 5 C -0.402 4.402 6 H 0.090 0.910 7 C 0.056 3.944 8 N -0.843 5.843 9 Si 0.919 3.081 10 H -0.257 1.257 11 H -0.276 1.276 12 H -0.267 1.267 13 C 0.496 3.504 14 O -0.618 6.618 15 C -0.112 4.112 16 C 0.002 3.998 17 C -0.114 4.114 18 C -0.023 4.023 19 C -0.033 4.033 20 N -0.007 5.007 21 O -0.236 6.236 22 O -0.155 6.155 23 C -0.024 4.024 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.294 0.706 32 H 0.167 0.833 33 H 0.194 0.806 34 H 0.186 0.814 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 1.826 0.008 2.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.029 4.029 4 N -0.145 5.145 5 C -0.530 4.530 6 H 0.107 0.893 7 C -0.160 4.160 8 N -0.473 5.473 9 Si 0.745 3.255 10 H -0.182 1.182 11 H -0.202 1.202 12 H -0.192 1.192 13 C 0.287 3.713 14 O -0.506 6.506 15 C -0.116 4.116 16 C -0.017 4.017 17 C -0.132 4.132 18 C -0.043 4.043 19 C -0.120 4.120 20 N 0.468 4.532 21 O -0.415 6.415 22 O -0.358 6.358 23 C -0.045 4.045 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.184 0.816 33 H 0.211 0.789 34 H 0.203 0.797 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.470 2.242 0.113 2.684 hybrid contribution -0.567 -0.006 -0.313 0.648 sum 0.903 2.236 -0.200 2.420 Atomic orbital electron populations 1.21686 0.93172 1.02942 1.02206 1.21724 0.97672 0.95742 1.01491 1.21940 0.81883 0.98390 1.00705 1.42450 1.04766 1.61708 1.05556 1.19725 1.16645 1.21998 0.94605 0.89254 1.27374 0.97631 0.96847 0.94142 1.68675 1.40227 1.34032 1.04332 0.86242 0.80420 0.79238 0.79639 1.18245 1.20216 1.19157 1.18418 0.87053 0.82247 0.83569 1.90613 1.70269 1.57877 1.31800 1.19797 0.94154 0.99707 0.97912 1.22663 0.94419 0.93212 0.91431 1.21682 0.93586 0.98828 0.99120 1.21644 1.02907 0.90264 0.89448 1.20300 0.92186 1.01421 0.98055 1.50645 1.02764 0.99441 1.00392 1.96297 1.64324 1.45976 1.34943 1.96191 0.89839 1.72092 1.77659 1.20900 0.91793 0.95324 0.96447 0.90784 0.92160 0.92212 0.93197 0.92066 0.91779 0.91533 0.89411 0.81594 0.78934 0.79707 0.84338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.91 71.98 0.71 -3.19 16 2 C -0.13 -4.55 6.21 30.59 0.19 -4.36 16 3 C 0.09 3.75 3.73 86.38 0.32 4.08 16 4 N -0.43 -18.89 2.15 -634.11 -1.36 -20.26 16 5 C -0.40 -17.99 6.94 86.70 0.60 -17.38 16 6 H 0.09 4.24 6.66 -2.91 -0.02 4.22 16 7 C 0.06 2.46 5.60 87.30 0.49 2.95 16 8 N -0.84 -38.42 13.88 23.25 0.32 -38.10 16 9 Si 0.92 35.65 24.80 68.60 1.70 37.36 16 10 H -0.26 -9.47 6.93 99.48 0.69 -8.78 16 11 H -0.28 -10.33 7.11 99.48 0.71 -9.63 16 12 H -0.27 -10.88 6.87 99.48 0.68 -10.20 16 13 C 0.50 22.17 7.27 86.74 0.63 22.80 16 14 O -0.62 -30.56 16.53 -3.65 -0.06 -30.62 16 15 C -0.11 -4.25 5.38 -20.09 -0.11 -4.36 16 16 C 0.00 0.05 7.82 22.54 0.18 0.23 16 17 C -0.11 -2.63 10.03 22.23 0.22 -2.41 16 18 C -0.02 -0.56 9.57 22.34 0.21 -0.34 16 19 C -0.03 -1.05 6.88 36.34 0.25 -0.80 16 20 N -0.01 -0.24 4.98 -46.56 -0.23 -0.47 16 21 O -0.24 -9.28 19.14 3.51 0.07 -9.21 16 22 O -0.16 -5.09 19.14 3.52 0.07 -5.02 16 23 C -0.02 -0.86 9.16 22.54 0.21 -0.66 16 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 2.64 7.54 -2.39 -0.02 2.62 16 30 H 0.07 2.64 3.50 -2.39 -0.01 2.63 16 31 H 0.29 12.31 8.26 -92.70 -0.77 11.55 16 32 H 0.17 5.77 5.97 -2.91 -0.02 5.76 16 33 H 0.19 2.86 8.06 -2.91 -0.02 2.83 16 34 H 0.19 3.22 7.57 -2.91 -0.02 3.20 16 35 H 0.14 5.37 7.56 -2.91 -0.02 5.35 16 Total: -1.00 -56.85 305.85 5.50 -51.35 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 1.09 Total: 18.43 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 3.91 Total: -3.46 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -1.27 Total: -58.82 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: 0.07 Total: -44.85 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 1.70 Total: 37.36 kcal Total: -56.85 5.50 -51.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372764.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.469 kcal (2) G-P(sol) polarization free energy of solvation -56.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds