Wall clock time and date at job start Tue Mar 31 2020 00:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46957 * 2 1 4 4 N 1.46500 * 109.46870 * 186.58520 * 3 2 1 5 5 C 1.33321 * 120.00468 * 280.21789 * 4 3 2 6 6 H 1.08006 * 119.99868 * 237.85129 * 5 4 3 7 7 C 1.46779 * 120.00137 * 57.84879 * 5 4 3 8 8 N 1.29316 * 120.00216 * 42.17018 * 7 5 4 9 9 Si 1.86809 * 120.00131 * 222.17000 * 7 5 4 10 10 H 1.48504 * 109.46988 * 89.99854 * 9 7 5 11 11 H 1.48494 * 109.47252 * 209.99953 * 9 7 5 12 12 H 1.48494 * 109.46923 * 330.00066 * 9 7 5 13 13 C 1.34783 * 119.99615 * 100.22090 * 4 3 2 14 14 O 1.21476 * 120.00013 * 185.25762 * 13 4 3 15 15 C 1.47699 * 120.00111 * 5.25034 * 13 4 3 16 16 C 1.39667 * 120.15219 * 133.40910 * 15 13 4 17 17 C 1.37930 * 119.84475 * 180.02562 * 16 15 13 18 18 C 1.38386 * 120.15037 * 0.02562 * 17 16 15 19 19 N 1.48016 * 119.84158 * 179.97438 * 18 17 16 20 20 O 1.31707 * 120.00018 * 0.02562 * 19 18 17 21 21 O 1.31700 * 120.00023 * 179.72429 * 19 18 17 22 22 C 1.38381 * 120.31243 * 0.27204 * 18 17 16 23 23 C 1.37929 * 120.14936 * 359.45345 * 22 18 17 24 24 H 1.09007 * 109.46782 * 60.00315 * 1 2 3 25 25 H 1.08998 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47529 * 300.00213 * 1 2 3 27 27 H 1.08999 * 109.47389 * 240.00556 * 2 1 3 28 28 H 1.08999 * 109.47231 * 120.00087 * 2 1 3 29 29 H 1.08996 * 109.47001 * 66.59080 * 3 2 1 30 30 H 1.08993 * 109.47133 * 306.59071 * 3 2 1 31 31 H 0.96994 * 120.00294 * 180.02562 * 8 7 5 32 32 H 1.08001 * 120.07533 * 0.02562 * 16 15 13 33 33 H 1.08000 * 119.92297 * 179.97438 * 17 16 15 34 34 H 1.07998 * 119.92479 * 179.72731 * 22 18 17 35 35 H 1.07999 * 120.08014 * 180.25250 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4964 1.4456 -0.1584 5 6 4.2816 1.1989 0.8904 6 1 5.0185 1.9268 1.1963 7 6 4.1445 -0.0619 1.6294 8 7 3.9806 -1.1728 0.9881 9 14 4.2068 -0.0618 3.4965 10 1 2.8353 0.1164 4.0374 11 1 4.7631 -1.3533 3.9733 12 1 5.0713 1.0519 3.9628 13 6 4.0425 1.6979 -1.3645 14 8 5.2440 1.6067 -1.5183 15 6 3.1800 2.0850 -2.4993 16 6 3.5304 3.1674 -3.3095 17 6 2.7201 3.5238 -4.3672 18 6 1.5620 2.8119 -4.6262 19 7 0.6971 3.2006 -5.7628 20 8 1.0307 4.2215 -6.5251 21 8 -0.4029 2.5219 -6.0154 22 6 1.2055 1.7422 -3.8240 23 6 2.0095 1.3713 -2.7663 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7761 1.9212 0.9430 30 1 1.5835 1.9893 -0.8251 31 1 3.8897 -2.0059 1.4764 32 1 4.4337 3.7241 -3.1081 33 1 2.9896 4.3608 -4.9942 34 1 0.2981 1.1937 -4.0291 35 1 1.7323 0.5338 -2.1434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044372875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:39 Heat of formation + Delta-G solvation = 33.951590 kcal Electronic energy + Delta-G solvation = -21602.574539 eV Core-core repulsion = 18185.169443 eV Total energy + Delta-G solvation = -3417.405096 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.41827 -38.97228 -37.55824 -35.65650 -34.40394 -32.99144 -32.04653 -31.63624 -31.31643 -27.16774 -25.91697 -24.64242 -23.02250 -22.45900 -21.06438 -19.80573 -18.70206 -18.05703 -17.40071 -16.67119 -15.95055 -15.50057 -15.26208 -15.17767 -14.70407 -14.20232 -13.77523 -13.61515 -13.42494 -12.95320 -12.74699 -12.43317 -12.11253 -11.71350 -11.48478 -11.33961 -11.29980 -11.21636 -11.07864 -11.06465 -10.67702 -10.58967 -10.51026 -10.18232 -9.42492 -9.27846 -8.97835 -8.59416 -7.66193 -6.68094 -4.14446 -0.70069 1.00130 1.05377 1.16560 2.94683 3.09991 3.11265 3.15276 3.86227 3.92206 4.34583 4.41653 4.44553 4.46436 4.94652 4.96653 5.13789 5.16572 5.47964 5.55202 5.63461 5.71002 5.71605 5.80554 5.91256 6.01409 6.17337 6.22586 6.26092 6.38633 6.44444 6.72572 6.79651 7.04195 7.15793 8.21466 8.27678 8.87380 9.08498 9.91378 10.18186 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028606 B = 0.004943 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.567097 B = 5663.173987 C = 6338.539333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C 0.090 3.910 4 N -0.398 5.398 5 C -0.404 4.404 6 H 0.087 0.913 7 C 0.086 3.914 8 N -0.776 5.776 9 Si 0.894 3.106 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.260 1.260 13 C 0.476 3.524 14 O -0.552 6.552 15 C -0.032 4.032 16 C -0.087 4.087 17 C -0.056 4.056 18 C -0.012 4.012 19 N -0.011 5.011 20 O -0.182 6.182 21 O -0.181 6.181 22 C -0.056 4.056 23 C -0.107 4.107 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.277 0.723 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 3.119 -2.799 8.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C -0.033 4.033 4 N -0.114 5.114 5 C -0.530 4.530 6 H 0.105 0.895 7 C -0.136 4.136 8 N -0.401 5.401 9 Si 0.718 3.282 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.184 1.184 13 C 0.265 3.735 14 O -0.434 6.434 15 C -0.036 4.036 16 C -0.106 4.106 17 C -0.075 4.075 18 C -0.099 4.099 19 N 0.466 4.534 20 O -0.375 6.375 21 O -0.373 6.373 22 C -0.076 4.076 23 C -0.126 4.126 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.171 0.829 33 H 0.172 0.828 34 H 0.172 0.828 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.105 2.678 -2.369 7.075 hybrid contribution -0.383 -0.134 0.441 0.600 sum -6.488 2.545 -1.927 7.231 Atomic orbital electron populations 1.21836 0.97033 1.01148 1.01135 1.22124 0.93473 0.97860 1.04436 1.22110 0.83864 0.96331 1.00977 1.42047 1.04083 1.59553 1.05753 1.19533 1.24261 1.01588 1.07650 0.89524 1.27169 0.92307 0.93816 1.00273 1.69335 1.32829 0.98882 1.39098 0.86516 0.79383 0.78469 0.83832 1.19553 1.20921 1.18405 1.18726 0.88027 0.84619 0.82133 1.90643 1.14532 1.56183 1.82063 1.21390 0.93216 0.92675 0.96351 1.21374 0.99730 0.96587 0.92942 1.21034 0.90975 0.98659 0.96863 1.20474 0.94838 1.02960 0.91603 1.50522 1.01435 1.00016 1.01454 1.96254 1.78313 1.16457 1.46448 1.96256 1.11033 1.51994 1.78054 1.21059 1.00650 0.93546 0.92317 1.22060 0.92901 1.01182 0.96444 0.93411 0.93036 0.92995 0.91845 0.89484 0.91321 0.92509 0.91102 0.82924 0.82765 0.82759 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.14 -2.43 4.36 -26.73 -0.12 -2.55 16 3 C 0.09 1.64 4.76 -4.04 -0.02 1.62 16 4 N -0.40 -9.00 2.51 -114.38 -0.29 -9.28 16 5 C -0.40 -10.17 8.61 -13.45 -0.12 -10.29 16 6 H 0.09 2.33 8.06 -52.48 -0.42 1.91 16 7 C 0.09 2.04 4.10 -15.16 -0.06 1.98 16 8 N -0.78 -18.66 11.74 56.00 0.66 -18.00 16 9 Si 0.89 17.90 29.72 -169.99 -5.05 12.85 16 10 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 11 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 13 C 0.48 10.80 7.19 -12.39 -0.09 10.72 16 14 O -0.55 -14.86 16.95 5.39 0.09 -14.77 16 15 C -0.03 -0.56 5.05 -104.96 -0.53 -1.09 16 16 C -0.09 -1.29 9.71 -39.16 -0.38 -1.67 16 17 C -0.06 -0.74 9.56 -39.64 -0.38 -1.12 16 18 C -0.01 -0.18 6.89 -79.84 -0.55 -0.73 16 19 N -0.01 -0.18 4.98 34.01 0.17 -0.01 16 20 O -0.18 -2.97 19.14 -31.57 -0.60 -3.58 16 21 O -0.18 -2.95 19.14 -31.57 -0.60 -3.55 16 22 C -0.06 -0.76 9.56 -39.64 -0.38 -1.14 16 23 C -0.11 -1.61 7.40 -39.16 -0.29 -1.90 16 24 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.16 6.33 -51.93 -0.33 0.83 16 28 H 0.09 1.73 5.45 -51.93 -0.28 1.44 16 29 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 30 H 0.06 0.90 4.97 -51.93 -0.26 0.64 16 31 H 0.28 6.11 8.26 -40.82 -0.34 5.77 16 32 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 33 H 0.15 1.73 7.56 -52.49 -0.40 1.33 16 34 H 0.15 1.77 7.56 -52.49 -0.40 1.37 16 35 H 0.17 2.47 4.01 -52.49 -0.21 2.26 16 LS Contribution 305.41 15.07 4.60 4.60 Total: -1.00 -28.82 305.41 -7.11 -35.93 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -3.54 Total: 3.64 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -2.54 Total: -7.82 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: 0.54 Total: -27.29 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -1.12 Total: -21.90 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.05 Total: 12.85 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.82 -7.11 -35.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.883 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds