Wall clock time and date at job start Tue Mar 31 2020 00:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46957 * 2 1 4 4 N 1.46500 * 109.46870 * 186.58520 * 3 2 1 5 5 C 1.33321 * 120.00468 * 280.21789 * 4 3 2 6 6 H 1.08006 * 119.99868 * 237.85129 * 5 4 3 7 7 C 1.46779 * 120.00137 * 57.84879 * 5 4 3 8 8 N 1.29316 * 120.00216 * 42.17018 * 7 5 4 9 9 Si 1.86809 * 120.00131 * 222.17000 * 7 5 4 10 10 H 1.48504 * 109.46988 * 89.99854 * 9 7 5 11 11 H 1.48494 * 109.47252 * 209.99953 * 9 7 5 12 12 H 1.48494 * 109.46923 * 330.00066 * 9 7 5 13 13 C 1.34783 * 119.99615 * 100.22090 * 4 3 2 14 14 O 1.21476 * 120.00013 * 185.25762 * 13 4 3 15 15 C 1.47699 * 120.00111 * 5.25034 * 13 4 3 16 16 C 1.39667 * 120.15219 * 133.40910 * 15 13 4 17 17 C 1.37930 * 119.84475 * 180.02562 * 16 15 13 18 18 C 1.38386 * 120.15037 * 0.02562 * 17 16 15 19 19 N 1.48016 * 119.84158 * 179.97438 * 18 17 16 20 20 O 1.31707 * 120.00018 * 0.02562 * 19 18 17 21 21 O 1.31700 * 120.00023 * 179.72429 * 19 18 17 22 22 C 1.38381 * 120.31243 * 0.27204 * 18 17 16 23 23 C 1.37929 * 120.14936 * 359.45345 * 22 18 17 24 24 H 1.09007 * 109.46782 * 60.00315 * 1 2 3 25 25 H 1.08998 * 109.47131 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47529 * 300.00213 * 1 2 3 27 27 H 1.08999 * 109.47389 * 240.00556 * 2 1 3 28 28 H 1.08999 * 109.47231 * 120.00087 * 2 1 3 29 29 H 1.08996 * 109.47001 * 66.59080 * 3 2 1 30 30 H 1.08993 * 109.47133 * 306.59071 * 3 2 1 31 31 H 0.96994 * 120.00294 * 180.02562 * 8 7 5 32 32 H 1.08001 * 120.07533 * 0.02562 * 16 15 13 33 33 H 1.08000 * 119.92297 * 179.97438 * 17 16 15 34 34 H 1.07998 * 119.92479 * 179.72731 * 22 18 17 35 35 H 1.07999 * 120.08014 * 180.25250 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4964 1.4456 -0.1584 5 6 4.2816 1.1989 0.8904 6 1 5.0185 1.9268 1.1963 7 6 4.1445 -0.0619 1.6294 8 7 3.9806 -1.1728 0.9881 9 14 4.2068 -0.0618 3.4965 10 1 2.8353 0.1164 4.0374 11 1 4.7631 -1.3533 3.9733 12 1 5.0713 1.0519 3.9628 13 6 4.0425 1.6979 -1.3645 14 8 5.2440 1.6067 -1.5183 15 6 3.1800 2.0850 -2.4993 16 6 3.5304 3.1674 -3.3095 17 6 2.7201 3.5238 -4.3672 18 6 1.5620 2.8119 -4.6262 19 7 0.6971 3.2006 -5.7628 20 8 1.0307 4.2215 -6.5251 21 8 -0.4029 2.5219 -6.0154 22 6 1.2055 1.7422 -3.8240 23 6 2.0095 1.3713 -2.7663 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7761 1.9212 0.9430 30 1 1.5835 1.9893 -0.8251 31 1 3.8897 -2.0059 1.4764 32 1 4.4337 3.7241 -3.1081 33 1 2.9896 4.3608 -4.9942 34 1 0.2981 1.1937 -4.0291 35 1 1.7323 0.5338 -2.1434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044372875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:39 Heat of formation + Delta-G solvation = 18.112956 kcal Electronic energy + Delta-G solvation = -21603.261353 eV Core-core repulsion = 18185.169443 eV Total energy + Delta-G solvation = -3418.091910 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.76003 -40.40609 -38.92673 -37.34539 -35.64623 -34.65953 -33.58686 -32.98065 -32.49664 -28.54496 -27.31343 -26.23284 -24.20104 -23.83959 -22.41953 -21.35006 -19.91581 -19.33562 -19.08906 -18.20722 -17.18753 -17.08049 -16.74976 -16.48614 -16.21899 -15.51769 -15.31173 -15.07150 -14.62040 -14.20895 -14.08443 -14.02377 -13.66752 -13.13458 -12.86979 -12.76790 -12.65557 -12.61104 -12.47569 -12.34940 -12.09746 -11.98161 -11.93068 -11.55437 -10.87625 -10.62210 -10.50312 -10.29097 -9.44266 -8.47195 -6.05270 -1.94996 -0.20473 -0.14078 -0.05070 1.34164 1.43974 1.52259 1.78246 2.27066 2.32102 2.66269 2.84182 3.23713 3.34128 3.65763 3.72302 3.83015 4.01389 4.14641 4.31491 4.46973 4.49849 4.53996 4.60629 4.71383 4.75598 4.82957 5.01366 5.06662 5.22579 5.26227 5.29953 5.41256 5.53964 5.71342 6.32288 6.46399 7.07352 7.35231 8.13389 8.38818 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028606 B = 0.004943 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.567097 B = 5663.173987 C = 6338.539333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.091 3.909 4 N -0.406 5.406 5 C -0.446 4.446 6 H 0.053 0.947 7 C 0.061 3.939 8 N -0.800 5.800 9 Si 0.960 3.040 10 H -0.252 1.252 11 H -0.278 1.278 12 H -0.270 1.270 13 C 0.464 3.536 14 O -0.612 6.612 15 C -0.051 4.051 16 C -0.083 4.083 17 C -0.038 4.038 18 C -0.013 4.013 19 N -0.011 5.011 20 O -0.190 6.190 21 O -0.183 6.183 22 C -0.038 4.038 23 C -0.102 4.102 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.286 0.714 32 H 0.157 0.843 33 H 0.180 0.820 34 H 0.182 0.818 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.521 3.247 -3.231 10.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C -0.031 4.031 4 N -0.121 5.121 5 C -0.573 4.573 6 H 0.070 0.930 7 C -0.160 4.160 8 N -0.426 5.426 9 Si 0.782 3.218 10 H -0.176 1.176 11 H -0.203 1.203 12 H -0.194 1.194 13 C 0.255 3.745 14 O -0.498 6.498 15 C -0.055 4.055 16 C -0.103 4.103 17 C -0.057 4.057 18 C -0.099 4.099 19 N 0.465 4.535 20 O -0.381 6.381 21 O -0.377 6.377 22 C -0.057 4.057 23 C -0.120 4.120 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.175 0.825 33 H 0.197 0.803 34 H 0.199 0.801 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.613 2.810 -2.798 9.482 hybrid contribution 0.392 -0.161 0.466 0.629 sum -8.221 2.648 -2.333 8.947 Atomic orbital electron populations 1.21771 0.93429 1.02369 1.02716 1.21989 0.96468 0.96399 1.02353 1.22240 0.81122 0.97561 1.02183 1.42320 1.05730 1.58870 1.05216 1.19400 1.25986 1.02166 1.09713 0.92980 1.27809 0.91412 0.92854 1.03928 1.69329 1.32960 0.99447 1.40836 0.85538 0.79972 0.78032 0.78305 1.17620 1.20306 1.19400 1.19413 0.87968 0.83602 0.83505 1.90580 1.17262 1.58564 1.83439 1.20969 0.94125 0.95003 0.95423 1.21374 1.00107 0.95959 0.92848 1.21180 0.89878 0.98666 0.95946 1.20661 0.94854 1.03182 0.91219 1.50641 1.01425 0.99864 1.01541 1.96263 1.78383 1.16701 1.46803 1.96259 1.11276 1.51949 1.78167 1.21208 1.00817 0.92863 0.90804 1.21947 0.92145 1.00841 0.97109 0.91134 0.92039 0.92099 0.93307 0.92288 0.91109 0.89818 0.90218 0.82536 0.80255 0.80071 0.81669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.91 71.98 0.71 -2.71 16 2 C -0.13 -4.51 4.36 30.60 0.13 -4.38 16 3 C 0.09 3.27 4.76 86.38 0.41 3.68 16 4 N -0.41 -19.02 2.51 -634.10 -1.59 -20.61 16 5 C -0.45 -23.62 8.61 86.70 0.75 -22.87 16 6 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 7 C 0.06 2.94 4.10 87.30 0.36 3.30 16 8 N -0.80 -39.26 11.74 23.25 0.27 -38.99 16 9 Si 0.96 37.22 29.72 68.60 2.04 39.26 16 10 H -0.25 -9.00 7.11 99.48 0.71 -8.30 16 11 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 12 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 13 C 0.46 21.92 7.19 86.74 0.62 22.55 16 14 O -0.61 -34.91 16.95 -3.64 -0.06 -34.98 16 15 C -0.05 -1.77 5.05 -20.09 -0.10 -1.87 16 16 C -0.08 -2.38 9.71 22.54 0.22 -2.16 16 17 C -0.04 -0.89 9.56 22.23 0.21 -0.68 16 18 C -0.01 -0.32 6.89 36.45 0.25 -0.07 16 19 N -0.01 -0.32 4.98 -46.30 -0.23 -0.55 16 20 O -0.19 -5.65 19.14 3.50 0.07 -5.58 16 21 O -0.18 -5.38 19.14 3.51 0.07 -5.31 16 22 C -0.04 -0.89 9.56 22.23 0.21 -0.67 16 23 C -0.10 -2.86 7.40 22.54 0.17 -2.69 16 24 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.77 6.33 -2.39 -0.02 1.75 16 28 H 0.06 2.33 5.45 -2.39 -0.01 2.31 16 29 H 0.07 2.48 8.11 -2.39 -0.02 2.46 16 30 H 0.08 2.51 4.97 -2.39 -0.01 2.50 16 31 H 0.29 12.71 8.26 -92.71 -0.77 11.94 16 32 H 0.16 4.33 8.06 -2.91 -0.02 4.30 16 33 H 0.18 3.40 7.56 -2.91 -0.02 3.37 16 34 H 0.18 3.33 7.56 -2.91 -0.02 3.30 16 35 H 0.17 4.68 4.01 -2.91 -0.01 4.67 16 Total: -1.00 -65.47 305.41 5.64 -59.83 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 1.13 Total: 15.52 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 3.95 Total: -8.59 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -1.55 Total: -60.15 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: 0.07 Total: -45.87 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.04 Total: 39.26 kcal Total: -65.47 5.64 -59.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.946 kcal (2) G-P(sol) polarization free energy of solvation -65.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds