Wall clock time and date at job start Tue Mar 31 2020 01:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47536 * 2 1 4 4 C 1.33324 * 119.99944 * 264.32285 * 3 2 1 5 5 H 1.07997 * 120.00220 * 141.04966 * 4 3 2 6 6 C 1.46785 * 120.00116 * 321.04390 * 4 3 2 7 7 N 1.29315 * 119.99888 * 161.64396 * 6 4 3 8 8 Si 1.86797 * 120.00074 * 341.65070 * 6 4 3 9 9 H 1.48501 * 109.47315 * 94.04896 * 8 6 4 10 10 H 1.48498 * 109.47213 * 214.04825 * 8 6 4 11 11 H 1.48503 * 109.47192 * 334.04964 * 8 6 4 12 12 C 1.34779 * 119.99849 * 84.32407 * 3 2 1 13 13 O 1.21476 * 120.00127 * 3.12521 * 12 3 2 14 14 C 1.47696 * 120.00083 * 183.13366 * 12 3 2 15 15 C 1.39691 * 120.14690 * 318.63371 * 14 12 3 16 16 C 1.37907 * 119.83778 * 180.27514 * 15 14 12 17 17 C 1.38399 * 120.15846 * 359.47361 * 16 15 14 18 18 C 1.38362 * 120.30698 * 0.22737 * 17 16 15 19 19 C 1.50700 * 119.92486 * 180.02562 * 18 17 16 20 20 C 1.37950 * 120.15290 * 0.05198 * 18 17 16 21 21 N 1.48016 * 120.07891 * 179.97438 * 20 18 17 22 22 O 1.31707 * 120.00017 * 89.99770 * 21 20 18 23 23 O 1.31695 * 119.99925 * 269.99978 * 21 20 18 24 24 H 1.09002 * 109.46923 * 59.99736 * 1 2 3 25 25 H 1.08995 * 109.47891 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46985 * 300.00290 * 1 2 3 27 27 H 1.09004 * 109.46985 * 239.99709 * 2 1 3 28 28 H 1.09002 * 109.46923 * 120.00264 * 2 1 3 29 29 H 0.96999 * 119.99598 * 180.02562 * 7 6 4 30 30 H 1.07993 * 120.08321 * 0.02562 * 15 14 12 31 31 H 1.08001 * 119.92251 * 179.74642 * 16 15 14 32 32 H 1.08001 * 119.84747 * 180.25922 * 17 16 15 33 33 H 1.09004 * 109.46547 * 90.00363 * 19 18 17 34 34 H 1.08996 * 109.47264 * 210.00340 * 19 18 17 35 35 H 1.08997 * 109.47423 * 330.00975 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3483 1.9716 -1.1490 5 1 2.1065 3.0116 -1.3106 6 6 3.0404 1.2080 -2.1942 7 7 3.0487 1.6407 -3.4128 8 14 3.9091 -0.3888 -1.7642 9 1 2.9919 -1.5316 -2.0046 10 1 5.1188 -0.5382 -2.6124 11 1 4.3073 -0.3660 -0.3337 12 6 2.1342 2.0550 1.1615 13 8 1.8880 1.4992 2.2133 14 6 2.5604 3.4691 1.1556 15 6 3.5864 3.8891 0.3057 16 6 3.9831 5.2098 0.3095 17 6 3.3600 6.1206 1.1448 18 6 2.3389 5.7127 1.9847 19 6 1.6660 6.7118 2.8903 20 6 1.9358 4.3935 1.9954 21 7 0.8437 3.9589 2.8950 22 8 -0.4053 3.9920 2.4783 23 8 1.1208 3.5390 4.1121 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.5057 1.1359 -4.1036 30 1 4.0704 3.1804 -0.3499 31 1 4.7789 5.5352 -0.3441 32 1 3.6719 7.1546 1.1406 33 1 0.8165 7.1570 2.3723 34 1 1.3184 6.2082 3.7922 35 1 2.3764 7.4929 3.1611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044410949.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:48 Heat of formation + Delta-G solvation = 33.494225 kcal Electronic energy + Delta-G solvation = -22367.211534 eV Core-core repulsion = 18949.786606 eV Total energy + Delta-G solvation = -3417.424929 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.33657 -38.63015 -37.66384 -35.34423 -33.78874 -33.11624 -32.69397 -31.57370 -30.17281 -27.46017 -25.95739 -24.92105 -23.76254 -22.19879 -21.36337 -19.47379 -18.19190 -17.66351 -17.48841 -16.42028 -16.18135 -15.38652 -15.14212 -14.54988 -14.32754 -14.03974 -13.82108 -13.54936 -13.28351 -12.88833 -12.68474 -12.49167 -12.19907 -11.90010 -11.87457 -11.63703 -11.35348 -11.16661 -10.95015 -10.88921 -10.53021 -10.34622 -10.10227 -10.05319 -9.55767 -9.15644 -8.95193 -8.68797 -8.16490 -6.91836 -4.21331 0.32207 0.85835 1.18782 1.63023 2.79694 2.97109 3.03722 3.25389 3.73588 3.80327 4.03514 4.51446 4.59445 4.77441 5.03196 5.19553 5.34688 5.37181 5.41384 5.55131 5.67361 5.75422 5.94019 5.98729 6.04216 6.14219 6.17650 6.31065 6.47369 6.50286 6.56579 6.74881 6.84918 6.94351 7.18024 7.67219 7.95683 8.46364 9.03401 9.49366 10.12111 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.007676 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.370233 B = 3646.966537 C = 4530.540209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 N -0.409 5.409 4 C -0.396 4.396 5 H 0.107 0.893 6 C 0.079 3.921 7 N -0.808 5.808 8 Si 0.877 3.123 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.254 1.254 12 C 0.473 3.527 13 O -0.584 6.584 14 C -0.034 4.034 15 C -0.053 4.053 16 C -0.099 4.099 17 C -0.108 4.108 18 C -0.060 4.060 19 C -0.124 4.124 20 C 0.032 3.968 21 N -0.016 5.016 22 O -0.167 6.167 23 O -0.123 6.123 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.287 0.713 30 H 0.170 0.830 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.022 6.533 2.757 7.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.030 4.030 3 N -0.124 5.124 4 C -0.524 4.524 5 H 0.124 0.876 6 C -0.140 4.140 7 N -0.436 5.436 8 Si 0.703 3.297 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.177 1.177 12 C 0.263 3.737 13 O -0.470 6.470 14 C -0.039 4.039 15 C -0.072 4.072 16 C -0.117 4.117 17 C -0.127 4.127 18 C -0.061 4.061 19 C -0.181 4.181 20 C -0.050 4.050 21 N 0.480 4.520 22 O -0.366 6.366 23 O -0.335 6.335 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.187 0.813 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.451 6.426 2.479 7.704 hybrid contribution 0.044 -0.938 -0.041 0.940 sum 3.495 5.488 2.438 6.949 Atomic orbital electron populations 1.21981 0.95764 1.01109 1.02652 1.21762 0.95075 0.84891 1.01272 1.42415 1.52658 1.11726 1.05593 1.19985 1.41231 0.98976 0.92190 0.87560 1.27011 0.94739 0.98074 0.94147 1.68710 1.34518 1.39220 1.01186 0.86914 0.79573 0.82554 0.80660 1.19302 1.20721 1.17727 1.17995 0.84836 0.86417 0.84416 1.90741 1.56445 1.69304 1.30559 1.19839 0.95939 0.94194 0.93897 1.21886 0.93812 0.96656 0.94855 1.21447 0.99295 0.93197 0.97734 1.21010 0.95488 1.00408 0.95805 1.19368 0.97379 0.90588 0.98810 1.20927 1.01139 0.97928 0.98096 1.20024 0.92844 0.94437 0.97731 1.50181 1.03320 0.96144 1.02345 1.96246 1.00366 1.59855 1.80129 1.96229 1.90804 1.46183 1.00263 0.91981 0.92605 0.92373 0.91307 0.91117 0.90048 0.81319 0.84216 0.84249 0.89949 0.91561 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 10.20 37.16 0.38 -2.77 16 2 C 0.09 2.04 4.69 -4.04 -0.02 2.02 16 3 N -0.41 -9.80 2.17 -114.38 -0.25 -10.05 16 4 C -0.40 -9.55 7.17 -13.45 -0.10 -9.64 16 5 H 0.11 2.71 6.65 -52.49 -0.35 2.36 16 6 C 0.08 1.85 5.49 -15.16 -0.08 1.76 16 7 N -0.81 -19.49 13.88 56.00 0.78 -18.71 16 8 Si 0.88 18.38 25.06 -169.99 -4.26 14.12 16 9 H -0.27 -5.43 6.76 56.52 0.38 -5.05 16 10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.25 -5.51 7.11 56.52 0.40 -5.11 16 12 C 0.47 11.67 7.03 -12.40 -0.09 11.58 16 13 O -0.58 -15.81 15.30 2.21 0.03 -15.77 16 14 C -0.03 -0.74 5.24 -104.97 -0.55 -1.29 16 15 C -0.05 -0.97 7.83 -39.16 -0.31 -1.27 16 16 C -0.10 -1.38 10.03 -39.64 -0.40 -1.78 16 17 C -0.11 -1.41 9.69 -39.48 -0.38 -1.79 16 18 C -0.06 -0.95 5.87 -104.68 -0.61 -1.56 16 19 C -0.12 -1.58 9.77 36.01 0.35 -1.23 16 20 C 0.03 0.66 6.21 -79.53 -0.49 0.17 16 21 N -0.02 -0.37 2.60 34.17 0.09 -0.28 16 22 O -0.17 -3.85 19.97 -31.57 -0.63 -4.48 16 23 O -0.12 -2.81 19.42 -34.35 -0.67 -3.48 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.07 1.48 3.50 -51.93 -0.18 1.30 16 28 H 0.07 1.56 7.56 -51.93 -0.39 1.17 16 29 H 0.29 6.36 8.26 -40.82 -0.34 6.02 16 30 H 0.17 3.21 6.34 -52.49 -0.33 2.88 16 31 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.94 7.37 -51.93 -0.38 0.56 16 35 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 LS Contribution 305.05 15.07 4.60 4.60 Total: -1.00 -29.71 305.05 -6.36 -36.07 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -3.75 Total: 3.80 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.30 Total: -5.81 kcal Atomic # 7 Polarization: -29.66 SS G_CDS: 0.62 Total: -29.04 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -1.26 Total: -23.73 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -4.26 Total: 14.12 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.71 -6.36 -36.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044410949.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.565 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds