Wall clock time and date at job start Tue Mar 31 2020 01:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47536 * 2 1 4 4 C 1.33324 * 119.99944 * 264.32285 * 3 2 1 5 5 H 1.07997 * 120.00220 * 141.04966 * 4 3 2 6 6 C 1.46785 * 120.00116 * 321.04390 * 4 3 2 7 7 N 1.29315 * 119.99888 * 161.64396 * 6 4 3 8 8 Si 1.86797 * 120.00074 * 341.65070 * 6 4 3 9 9 H 1.48501 * 109.47315 * 94.04896 * 8 6 4 10 10 H 1.48498 * 109.47213 * 214.04825 * 8 6 4 11 11 H 1.48503 * 109.47192 * 334.04964 * 8 6 4 12 12 C 1.34779 * 119.99849 * 84.32407 * 3 2 1 13 13 O 1.21476 * 120.00127 * 3.12521 * 12 3 2 14 14 C 1.47696 * 120.00083 * 183.13366 * 12 3 2 15 15 C 1.39691 * 120.14690 * 318.63371 * 14 12 3 16 16 C 1.37907 * 119.83778 * 180.27514 * 15 14 12 17 17 C 1.38399 * 120.15846 * 359.47361 * 16 15 14 18 18 C 1.38362 * 120.30698 * 0.22737 * 17 16 15 19 19 C 1.50700 * 119.92486 * 180.02562 * 18 17 16 20 20 C 1.37950 * 120.15290 * 0.05198 * 18 17 16 21 21 N 1.48016 * 120.07891 * 179.97438 * 20 18 17 22 22 O 1.31707 * 120.00017 * 89.99770 * 21 20 18 23 23 O 1.31695 * 119.99925 * 269.99978 * 21 20 18 24 24 H 1.09002 * 109.46923 * 59.99736 * 1 2 3 25 25 H 1.08995 * 109.47891 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46985 * 300.00290 * 1 2 3 27 27 H 1.09004 * 109.46985 * 239.99709 * 2 1 3 28 28 H 1.09002 * 109.46923 * 120.00264 * 2 1 3 29 29 H 0.96999 * 119.99598 * 180.02562 * 7 6 4 30 30 H 1.07993 * 120.08321 * 0.02562 * 15 14 12 31 31 H 1.08001 * 119.92251 * 179.74642 * 16 15 14 32 32 H 1.08001 * 119.84747 * 180.25922 * 17 16 15 33 33 H 1.09004 * 109.46547 * 90.00363 * 19 18 17 34 34 H 1.08996 * 109.47264 * 210.00340 * 19 18 17 35 35 H 1.08997 * 109.47423 * 330.00975 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3483 1.9716 -1.1490 5 1 2.1065 3.0116 -1.3106 6 6 3.0404 1.2080 -2.1942 7 7 3.0487 1.6407 -3.4128 8 14 3.9091 -0.3888 -1.7642 9 1 2.9919 -1.5316 -2.0046 10 1 5.1188 -0.5382 -2.6124 11 1 4.3073 -0.3660 -0.3337 12 6 2.1342 2.0550 1.1615 13 8 1.8880 1.4992 2.2133 14 6 2.5604 3.4691 1.1556 15 6 3.5864 3.8891 0.3057 16 6 3.9831 5.2098 0.3095 17 6 3.3600 6.1206 1.1448 18 6 2.3389 5.7127 1.9847 19 6 1.6660 6.7118 2.8903 20 6 1.9358 4.3935 1.9954 21 7 0.8437 3.9589 2.8950 22 8 -0.4053 3.9920 2.4783 23 8 1.1208 3.5390 4.1121 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.5057 1.1359 -4.1036 30 1 4.0704 3.1804 -0.3499 31 1 4.7789 5.5352 -0.3441 32 1 3.6719 7.1546 1.1406 33 1 0.8165 7.1570 2.3723 34 1 1.3184 6.2082 3.7922 35 1 2.3764 7.4929 3.1611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044410949.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:48 Heat of formation + Delta-G solvation = 15.925992 kcal Electronic energy + Delta-G solvation = -22367.973350 eV Core-core repulsion = 18949.786606 eV Total energy + Delta-G solvation = -3418.186744 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.88914 -40.34723 -39.22719 -37.22292 -35.55947 -34.57530 -34.37131 -33.02043 -31.81799 -28.80203 -27.42445 -26.70193 -25.39650 -23.75808 -22.75070 -21.23052 -19.83038 -19.39803 -19.06706 -18.07103 -17.85041 -17.11402 -16.57726 -16.17667 -15.96373 -15.53672 -15.19156 -15.00335 -14.73798 -14.57376 -14.30688 -13.99659 -13.54001 -13.28065 -13.24753 -13.12014 -12.87108 -12.82162 -12.67879 -12.57620 -12.20196 -12.09213 -11.91685 -11.80747 -11.34639 -10.80399 -10.46414 -10.07972 -9.95302 -8.73555 -6.09113 -1.45770 -0.53250 -0.09983 0.03704 1.11414 1.26105 1.35096 1.63373 2.05360 2.24111 2.40907 2.74674 3.37366 3.49328 3.78900 3.88778 3.89318 3.97113 4.15932 4.21314 4.33098 4.33802 4.48293 4.62295 4.63816 4.66538 4.83272 4.91001 4.99315 5.03229 5.15476 5.20107 5.21761 5.38454 5.60854 5.83062 6.07957 6.62081 7.17299 7.66392 8.33519 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.007676 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.370233 B = 3646.966537 C = 4530.540209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.083 3.917 3 N -0.414 5.414 4 C -0.404 4.404 5 H 0.086 0.914 6 C 0.059 3.941 7 N -0.832 5.832 8 Si 0.921 3.079 9 H -0.254 1.254 10 H -0.265 1.265 11 H -0.272 1.272 12 C 0.459 3.541 13 O -0.623 6.623 14 C -0.075 4.075 15 C -0.064 4.064 16 C -0.078 4.078 17 C -0.079 4.079 18 C -0.058 4.058 19 C -0.124 4.124 20 C 0.000 4.000 21 N -0.010 5.010 22 O -0.192 6.192 23 O -0.140 6.140 24 H 0.056 0.944 25 H 0.092 0.908 26 H 0.034 0.966 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.297 0.703 30 H 0.154 0.846 31 H 0.186 0.814 32 H 0.201 0.799 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.740 8.619 1.858 10.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.039 4.039 3 N -0.129 5.129 4 C -0.531 4.531 5 H 0.103 0.897 6 C -0.158 4.158 7 N -0.461 5.461 8 Si 0.744 3.256 9 H -0.179 1.179 10 H -0.191 1.191 11 H -0.196 1.196 12 C 0.251 3.749 13 O -0.513 6.513 14 C -0.080 4.080 15 C -0.084 4.084 16 C -0.096 4.096 17 C -0.097 4.097 18 C -0.060 4.060 19 C -0.180 4.180 20 C -0.082 4.082 21 N 0.484 4.516 22 O -0.389 6.389 23 O -0.352 6.352 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.171 0.829 31 H 0.203 0.797 32 H 0.218 0.782 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.155 8.518 1.542 10.075 hybrid contribution -0.428 -1.441 0.230 1.521 sum 4.727 7.077 1.771 8.692 Atomic orbital electron populations 1.21904 0.94377 1.03078 1.01136 1.21913 0.96345 0.84342 1.01269 1.42536 1.52573 1.12301 1.05443 1.19746 1.42467 0.98510 0.92404 0.89684 1.27352 0.94653 1.00040 0.93777 1.68720 1.35124 1.40512 1.01766 0.86247 0.79504 0.80337 0.79470 1.17915 1.19060 1.19623 1.18630 0.84283 0.88064 0.83970 1.90679 1.58153 1.70720 1.31715 1.19762 0.98501 0.92861 0.96828 1.21853 0.93402 0.98706 0.94408 1.21972 0.99265 0.91025 0.97306 1.21717 0.92544 1.02746 0.92692 1.20009 0.97647 0.88987 0.99319 1.21063 1.02486 0.97913 0.96526 1.20516 0.93155 0.96374 0.98193 1.50541 1.03702 0.94983 1.02352 1.96218 1.01715 1.60821 1.80129 1.96199 1.90747 1.46817 1.01480 0.92507 0.88904 0.94677 0.90532 0.91692 0.89060 0.82860 0.79690 0.78234 0.88851 0.93801 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.02 10.20 71.98 0.73 -5.28 16 2 C 0.08 3.76 4.69 86.38 0.40 4.17 16 3 N -0.41 -20.58 2.17 -634.11 -1.37 -21.96 16 4 C -0.40 -19.95 7.17 86.70 0.62 -19.33 16 5 H 0.09 4.51 6.65 -2.91 -0.02 4.49 16 6 C 0.06 2.75 5.49 87.30 0.48 3.23 16 7 N -0.83 -39.75 13.88 23.26 0.32 -39.42 16 8 Si 0.92 37.34 25.06 68.60 1.72 39.05 16 9 H -0.25 -9.73 6.76 99.48 0.67 -9.06 16 10 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 C 0.46 23.75 7.03 86.74 0.61 24.36 16 13 O -0.62 -35.67 15.30 -0.60 -0.01 -35.68 16 14 C -0.08 -3.33 5.24 -20.09 -0.11 -3.44 16 15 C -0.06 -2.31 7.83 22.54 0.18 -2.14 16 16 C -0.08 -1.87 10.03 22.23 0.22 -1.65 16 17 C -0.08 -1.63 9.69 22.34 0.22 -1.41 16 18 C -0.06 -1.68 5.87 -19.90 -0.12 -1.80 16 19 C -0.12 -2.74 9.77 71.24 0.70 -2.04 16 20 C 0.00 -0.01 6.21 36.65 0.23 0.21 16 21 N -0.01 -0.48 2.60 -45.82 -0.12 -0.60 16 22 O -0.19 -9.27 19.97 3.50 0.07 -9.20 16 23 O -0.14 -6.71 19.42 6.18 0.12 -6.59 16 24 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.08 3.29 3.50 -2.38 -0.01 3.28 16 28 H 0.06 2.97 7.56 -2.39 -0.02 2.95 16 29 H 0.30 12.83 8.26 -92.71 -0.77 12.07 16 30 H 0.15 5.92 6.34 -2.91 -0.02 5.90 16 31 H 0.19 2.80 8.06 -2.91 -0.02 2.78 16 32 H 0.20 1.87 8.06 -2.91 -0.02 1.84 16 33 H 0.09 1.90 8.14 -2.38 -0.02 1.89 16 34 H 0.04 1.18 7.37 -2.39 -0.02 1.17 16 35 H 0.13 1.68 8.08 -2.39 -0.02 1.66 16 Total: -1.00 -70.07 305.05 5.99 -64.08 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 1.09 Total: 15.44 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 4.17 Total: -5.12 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -1.17 Total: -61.99 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: 0.18 Total: -51.47 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 1.72 Total: 39.05 kcal Total: -70.07 5.99 -64.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044410949.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.007 kcal (2) G-P(sol) polarization free energy of solvation -70.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds