Wall clock time and date at job start Tue Mar 31 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47247 * 2 1 4 4 C 1.33332 * 119.99553 * 66.77391 * 3 2 1 5 5 H 1.07996 * 120.00338 * 241.74564 * 4 3 2 6 6 C 1.46783 * 119.99921 * 61.74446 * 4 3 2 7 7 N 1.29317 * 119.99964 * 40.09444 * 6 4 3 8 8 Si 1.86802 * 120.00178 * 220.08730 * 6 4 3 9 9 H 1.48505 * 109.46570 * 60.00720 * 8 6 4 10 10 H 1.48498 * 109.47174 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47644 * 300.00711 * 8 6 4 12 12 C 1.34768 * 120.00415 * 246.77505 * 3 2 1 13 13 O 1.21473 * 120.00302 * 192.31763 * 12 3 2 14 14 C 1.47702 * 120.00045 * 12.32305 * 12 3 2 15 15 C 1.39688 * 120.14990 * 26.95776 * 14 12 3 16 16 C 1.37908 * 119.84074 * 179.74302 * 15 14 12 17 17 C 1.38405 * 120.15668 * 0.53311 * 16 15 14 18 18 C 1.50692 * 119.84641 * 179.69465 * 17 16 15 19 19 C 1.38359 * 120.30582 * 359.72375 * 17 16 15 20 20 N 1.48018 * 119.92197 * 179.97438 * 19 17 16 21 21 O 1.31693 * 119.99864 * 318.66064 * 20 19 17 22 22 O 1.31705 * 119.99782 * 138.66358 * 20 19 17 23 23 C 1.37952 * 120.15481 * 0.02562 * 19 17 16 24 24 H 1.08997 * 109.47542 * 97.46841 * 1 2 3 25 25 H 1.09008 * 109.47145 * 217.46952 * 1 2 3 26 26 H 1.08998 * 109.47467 * 337.46438 * 1 2 3 27 27 H 1.08999 * 109.47623 * 120.00143 * 2 1 3 28 28 H 1.08999 * 109.47210 * 240.00430 * 2 1 3 29 29 H 0.97004 * 120.00171 * 179.97438 * 7 6 4 30 30 H 1.08002 * 120.08051 * 359.97438 * 15 14 12 31 31 H 1.08006 * 119.92365 * 180.25308 * 16 15 14 32 32 H 1.09001 * 109.47446 * 264.39362 * 18 17 16 33 33 H 1.09000 * 109.47283 * 24.39554 * 18 17 16 34 34 H 1.09007 * 109.47149 * 144.39152 * 18 17 16 35 35 H 1.07996 * 120.08002 * 179.97438 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.8112 2.1615 1.0612 5 1 1.2236 3.0623 0.9627 6 6 2.3817 1.7961 2.3633 7 7 3.5763 1.3056 2.4311 8 14 1.3822 2.0399 3.9225 9 1 0.1340 1.2395 3.8405 10 1 2.1780 1.5960 5.0950 11 1 1.0397 3.4771 4.0714 12 6 2.6769 1.8632 -1.0725 13 8 3.2737 2.9183 -0.9951 14 6 2.6728 1.1085 -2.3422 15 6 1.6102 0.2548 -2.6475 16 6 1.6103 -0.4428 -3.8371 17 6 2.6653 -0.3069 -4.7226 18 6 2.6616 -1.0777 -6.0175 19 6 3.7237 0.5328 -4.4242 20 7 4.8478 0.6713 -5.3771 21 8 5.3236 -0.3911 -5.9929 22 8 5.3722 1.8569 -5.6090 23 6 3.7341 1.2406 -3.2401 24 1 -0.3634 -0.1336 -1.0189 25 1 -0.3634 -0.8157 0.6252 26 1 -0.3634 0.9492 0.3938 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.9535 1.0644 3.2917 30 1 0.7886 0.1441 -1.9552 31 1 0.7874 -1.1001 -4.0764 32 1 3.2344 -1.9970 -5.8949 33 1 1.6355 -1.3229 -6.2915 34 1 3.1123 -0.4709 -6.8029 35 1 4.5610 1.8954 -3.0082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044410956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:52 Heat of formation + Delta-G solvation = 44.848462 kcal Electronic energy + Delta-G solvation = -21575.723797 eV Core-core repulsion = 18158.791225 eV Total energy + Delta-G solvation = -3416.932572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.54025 -38.92104 -37.61826 -35.31601 -34.38885 -33.25026 -32.43393 -31.64488 -29.85997 -28.02975 -26.51049 -24.67997 -22.77696 -22.52804 -21.89926 -19.98085 -18.19491 -17.97423 -16.93445 -16.45181 -16.28737 -15.52463 -15.32698 -14.89484 -14.46283 -14.04832 -13.85939 -13.77428 -13.55462 -13.08450 -12.60979 -12.40319 -12.10752 -11.82032 -11.62912 -11.47055 -11.28723 -11.25943 -11.20886 -10.90598 -10.84148 -10.55409 -10.53747 -10.44534 -9.37340 -9.12255 -8.87555 -8.60766 -7.56452 -6.58681 -4.14113 -0.43716 0.80316 1.05400 1.21606 3.00059 3.09453 3.11056 3.13192 3.91866 4.12562 4.29367 4.37121 4.52694 4.56894 4.82436 4.97519 5.03396 5.19785 5.33497 5.34741 5.46801 5.54673 5.74443 5.80988 5.85944 5.89370 5.96378 6.07202 6.20450 6.28088 6.51906 6.57844 6.81846 6.82261 7.15211 8.29998 8.33726 8.94840 9.14501 9.99017 10.26785 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028636 B = 0.004868 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.540955 B = 5750.421051 C = 6367.583514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.080 3.920 3 N -0.406 5.406 4 C -0.394 4.394 5 H 0.085 0.915 6 C 0.082 3.918 7 N -0.780 5.780 8 Si 0.899 3.101 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.489 3.511 13 O -0.550 6.550 14 C -0.099 4.099 15 C -0.068 4.068 16 C -0.126 4.126 17 C -0.028 4.028 18 C -0.123 4.123 19 C -0.010 4.010 20 N -0.020 5.020 21 O -0.164 6.164 22 O -0.163 6.163 23 C -0.017 4.017 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.277 0.723 30 H 0.168 0.832 31 H 0.147 0.853 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.772 -8.406 -8.302 13.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.043 4.043 3 N -0.124 5.124 4 C -0.521 4.521 5 H 0.102 0.898 6 C -0.141 4.141 7 N -0.405 5.405 8 Si 0.723 3.277 9 H -0.190 1.190 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.278 3.722 13 O -0.432 6.432 14 C -0.103 4.103 15 C -0.086 4.086 16 C -0.144 4.144 17 C -0.030 4.030 18 C -0.179 4.179 19 C -0.094 4.094 20 N 0.465 4.535 21 O -0.362 6.362 22 O -0.361 6.361 23 C -0.037 4.037 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.185 0.815 31 H 0.165 0.835 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.787 -8.019 -7.670 13.007 hybrid contribution 0.153 0.017 0.581 0.601 sum -6.634 -8.001 -7.089 12.581 Atomic orbital electron populations 1.22268 0.96739 1.03731 0.99869 1.22070 0.93771 0.87221 1.01266 1.41951 1.46493 1.10245 1.13667 1.19459 1.36783 1.11193 0.84684 0.89760 1.27330 0.92652 0.93276 1.00801 1.69286 1.12187 1.30927 1.28100 0.86509 0.81091 0.80024 0.80084 1.18956 1.21002 1.18950 1.18638 0.81310 0.87919 0.84294 1.90630 1.43663 1.24808 1.84080 1.20763 0.93796 0.98763 0.96995 1.22737 0.98588 0.91488 0.95831 1.21030 0.98200 1.01761 0.93436 1.19796 0.91922 0.93389 0.97921 1.21003 1.03656 1.00639 0.92599 1.20008 0.89217 1.07735 0.92430 1.50471 1.00978 1.02226 0.99841 1.96226 1.64543 1.24811 1.50593 1.96302 1.62671 1.07571 1.69521 1.21034 0.99395 0.93903 0.89370 0.93516 0.92623 0.90089 0.91892 0.91742 0.91078 0.81483 0.83485 0.88916 0.90319 0.91189 0.82825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 9.76 37.15 0.36 -2.12 16 2 C 0.08 1.46 5.43 -4.04 -0.02 1.44 16 3 N -0.41 -9.45 2.53 -114.39 -0.29 -9.74 16 4 C -0.39 -10.13 7.66 -13.45 -0.10 -10.24 16 5 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 6 C 0.08 2.04 5.18 -15.16 -0.08 1.97 16 7 N -0.78 -20.41 13.84 56.00 0.77 -19.64 16 8 Si 0.90 18.44 29.72 -169.99 -5.05 13.39 16 9 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 10 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 12 C 0.49 11.73 7.32 -12.40 -0.09 11.64 16 13 O -0.55 -15.66 16.64 5.39 0.09 -15.57 16 14 C -0.10 -1.86 5.39 -104.96 -0.57 -2.42 16 15 C -0.07 -0.98 7.43 -39.16 -0.29 -1.28 16 16 C -0.13 -1.46 9.66 -39.64 -0.38 -1.84 16 17 C -0.03 -0.37 5.88 -104.52 -0.61 -0.99 16 18 C -0.12 -1.26 8.62 36.00 0.31 -0.95 16 19 C -0.01 -0.16 6.47 -80.01 -0.52 -0.67 16 20 N -0.02 -0.35 4.51 33.93 0.15 -0.20 16 21 O -0.16 -2.75 17.74 -31.56 -0.56 -3.31 16 22 O -0.16 -3.08 19.77 -31.57 -0.62 -3.70 16 23 C -0.02 -0.31 9.28 -39.16 -0.36 -0.67 16 24 H 0.05 0.55 6.03 -51.93 -0.31 0.23 16 25 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 26 H 0.08 1.36 7.22 -51.93 -0.37 0.99 16 27 H 0.06 1.25 7.88 -51.93 -0.41 0.84 16 28 H 0.06 1.04 4.53 -51.93 -0.24 0.81 16 29 H 0.28 6.63 8.26 -40.82 -0.34 6.30 16 30 H 0.17 2.22 2.95 -52.49 -0.15 2.06 16 31 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 32 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 33 H 0.08 0.58 8.04 -51.93 -0.42 0.17 16 34 H 0.07 0.80 7.02 -51.93 -0.36 0.43 16 35 H 0.15 3.03 7.88 -52.49 -0.41 2.61 16 LS Contribution 306.35 15.07 4.62 4.62 Total: -1.00 -31.03 306.35 -6.75 -37.78 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.51 Total: 2.49 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.36 Total: -6.12 kcal Atomic # 7 Polarization: -30.22 SS G_CDS: 0.64 Total: -29.58 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -1.09 Total: -22.58 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.05 Total: 13.39 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.03 -6.75 -37.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044410956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.630 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds