Wall clock time and date at job start Tue Mar 31 2020 01:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47247 * 2 1 4 4 C 1.33332 * 119.99553 * 66.77391 * 3 2 1 5 5 H 1.07996 * 120.00338 * 241.74564 * 4 3 2 6 6 C 1.46783 * 119.99921 * 61.74446 * 4 3 2 7 7 N 1.29317 * 119.99964 * 40.09444 * 6 4 3 8 8 Si 1.86802 * 120.00178 * 220.08730 * 6 4 3 9 9 H 1.48505 * 109.46570 * 60.00720 * 8 6 4 10 10 H 1.48498 * 109.47174 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47644 * 300.00711 * 8 6 4 12 12 C 1.34768 * 120.00415 * 246.77505 * 3 2 1 13 13 O 1.21473 * 120.00302 * 192.31763 * 12 3 2 14 14 C 1.47702 * 120.00045 * 12.32305 * 12 3 2 15 15 C 1.39688 * 120.14990 * 26.95776 * 14 12 3 16 16 C 1.37908 * 119.84074 * 179.74302 * 15 14 12 17 17 C 1.38405 * 120.15668 * 0.53311 * 16 15 14 18 18 C 1.50692 * 119.84641 * 179.69465 * 17 16 15 19 19 C 1.38359 * 120.30582 * 359.72375 * 17 16 15 20 20 N 1.48018 * 119.92197 * 179.97438 * 19 17 16 21 21 O 1.31693 * 119.99864 * 318.66064 * 20 19 17 22 22 O 1.31705 * 119.99782 * 138.66358 * 20 19 17 23 23 C 1.37952 * 120.15481 * 0.02562 * 19 17 16 24 24 H 1.08997 * 109.47542 * 97.46841 * 1 2 3 25 25 H 1.09008 * 109.47145 * 217.46952 * 1 2 3 26 26 H 1.08998 * 109.47467 * 337.46438 * 1 2 3 27 27 H 1.08999 * 109.47623 * 120.00143 * 2 1 3 28 28 H 1.08999 * 109.47210 * 240.00430 * 2 1 3 29 29 H 0.97004 * 120.00171 * 179.97438 * 7 6 4 30 30 H 1.08002 * 120.08051 * 359.97438 * 15 14 12 31 31 H 1.08006 * 119.92365 * 180.25308 * 16 15 14 32 32 H 1.09001 * 109.47446 * 264.39362 * 18 17 16 33 33 H 1.09000 * 109.47283 * 24.39554 * 18 17 16 34 34 H 1.09007 * 109.47149 * 144.39152 * 18 17 16 35 35 H 1.07996 * 120.08002 * 179.97438 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.8112 2.1615 1.0612 5 1 1.2236 3.0623 0.9627 6 6 2.3817 1.7961 2.3633 7 7 3.5763 1.3056 2.4311 8 14 1.3822 2.0399 3.9225 9 1 0.1340 1.2395 3.8405 10 1 2.1780 1.5960 5.0950 11 1 1.0397 3.4771 4.0714 12 6 2.6769 1.8632 -1.0725 13 8 3.2737 2.9183 -0.9951 14 6 2.6728 1.1085 -2.3422 15 6 1.6102 0.2548 -2.6475 16 6 1.6103 -0.4428 -3.8371 17 6 2.6653 -0.3069 -4.7226 18 6 2.6616 -1.0777 -6.0175 19 6 3.7237 0.5328 -4.4242 20 7 4.8478 0.6713 -5.3771 21 8 5.3236 -0.3911 -5.9929 22 8 5.3722 1.8569 -5.6090 23 6 3.7341 1.2406 -3.2401 24 1 -0.3634 -0.1336 -1.0189 25 1 -0.3634 -0.8157 0.6252 26 1 -0.3634 0.9492 0.3938 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.9535 1.0644 3.2917 30 1 0.7886 0.1441 -1.9552 31 1 0.7874 -1.1001 -4.0764 32 1 3.2344 -1.9970 -5.8949 33 1 1.6355 -1.3229 -6.2915 34 1 3.1123 -0.4709 -6.8029 35 1 4.5610 1.8954 -3.0082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044410956.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:51 Heat of formation + Delta-G solvation = 25.258854 kcal Electronic energy + Delta-G solvation = -21576.573266 eV Core-core repulsion = 18158.791225 eV Total energy + Delta-G solvation = -3417.782041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.90721 -40.48682 -39.06374 -37.11629 -35.76748 -34.83614 -33.91062 -32.97160 -31.34194 -29.19725 -27.98216 -26.27818 -24.17429 -23.79765 -23.27547 -21.57456 -19.69358 -19.38636 -18.68997 -17.81735 -17.64135 -17.04196 -17.00135 -16.34721 -16.00568 -15.46304 -15.29011 -15.03260 -14.86075 -14.48065 -13.87968 -13.68231 -13.46108 -13.16200 -13.02484 -12.88433 -12.83776 -12.68299 -12.59826 -12.37363 -12.19841 -12.12997 -11.94021 -11.84587 -10.98280 -10.61877 -10.50754 -10.15601 -9.42880 -8.45007 -6.12122 -1.79916 -0.48019 -0.19509 -0.10742 1.36803 1.41662 1.51388 1.75084 2.23575 2.42313 2.68208 2.84253 3.19375 3.37310 3.64652 3.69722 3.73342 3.87795 4.18025 4.25797 4.36775 4.53070 4.58587 4.61595 4.65244 4.72380 4.92497 4.93125 5.04471 5.11042 5.21422 5.27242 5.35529 5.46194 5.59562 6.29157 6.51122 7.08478 7.34124 8.13600 8.40253 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028636 B = 0.004868 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.540955 B = 5750.421051 C = 6367.583514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.079 3.921 3 N -0.413 5.413 4 C -0.428 4.428 5 H 0.058 0.942 6 C 0.043 3.957 7 N -0.826 5.826 8 Si 0.974 3.026 9 H -0.242 1.242 10 H -0.277 1.277 11 H -0.271 1.271 12 C 0.471 3.529 13 O -0.620 6.620 14 C -0.124 4.124 15 C -0.052 4.052 16 C -0.095 4.095 17 C -0.006 4.006 18 C -0.125 4.125 19 C -0.025 4.025 20 N -0.019 5.019 21 O -0.110 6.110 22 O -0.240 6.240 23 C -0.035 4.035 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.090 0.910 29 H 0.284 0.716 30 H 0.185 0.815 31 H 0.213 0.787 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.056 0.944 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.155 -12.573 -9.665 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.043 4.043 3 N -0.129 5.129 4 C -0.555 4.555 5 H 0.075 0.925 6 C -0.176 4.176 7 N -0.453 5.453 8 Si 0.794 3.206 9 H -0.166 1.166 10 H -0.202 1.202 11 H -0.196 1.196 12 C 0.263 3.737 13 O -0.506 6.506 14 C -0.128 4.128 15 C -0.070 4.070 16 C -0.113 4.113 17 C -0.008 4.008 18 C -0.181 4.181 19 C -0.109 4.109 20 N 0.465 4.535 21 O -0.326 6.326 22 O -0.418 6.418 23 C -0.056 4.056 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.202 0.798 31 H 0.230 0.770 32 H 0.127 0.873 33 H 0.141 0.859 34 H 0.075 0.925 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.186 -12.021 -9.006 18.148 hybrid contribution 1.231 1.090 0.809 1.832 sum -8.955 -10.931 -8.197 16.336 Atomic orbital electron populations 1.22203 0.93278 1.03440 1.02917 1.22256 0.96580 0.83883 1.01562 1.42295 1.46036 1.11763 1.12809 1.19437 1.37715 1.11964 0.86393 0.92462 1.28233 0.93166 0.92524 1.03671 1.69333 1.13761 1.32797 1.29372 0.85388 0.79951 0.79686 0.75527 1.16554 1.20230 1.19620 1.19473 0.80212 0.87491 0.86516 1.90559 1.46423 1.27927 1.85737 1.20255 0.96295 1.00999 0.95276 1.22921 0.96886 0.89847 0.97357 1.21686 0.98578 1.00303 0.90720 1.20451 0.90108 0.90965 0.99262 1.21216 1.06833 1.00177 0.89905 1.20184 0.90122 1.09030 0.91570 1.50621 1.01108 1.01951 0.99848 1.96169 1.62955 1.24579 1.48902 1.96335 1.64973 1.08015 1.72445 1.20732 0.98994 0.94819 0.91069 0.89469 0.90061 0.92494 0.93882 0.89213 0.90410 0.79831 0.76988 0.87256 0.85852 0.92489 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 9.76 71.98 0.70 -3.54 16 2 C 0.08 2.83 5.43 86.38 0.47 3.30 16 3 N -0.41 -20.02 2.53 -634.12 -1.61 -21.63 16 4 C -0.43 -23.21 7.66 86.70 0.66 -22.55 16 5 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 6 C 0.04 2.22 5.18 87.30 0.45 2.67 16 7 N -0.83 -45.13 13.84 23.26 0.32 -44.81 16 8 Si 0.97 38.57 29.72 68.60 2.04 40.61 16 9 H -0.24 -8.66 7.11 99.48 0.71 -7.95 16 10 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 11 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 12 C 0.47 24.15 7.32 86.75 0.63 24.78 16 13 O -0.62 -38.79 16.64 -3.63 -0.06 -38.85 16 14 C -0.12 -4.76 5.39 -20.09 -0.11 -4.87 16 15 C -0.05 -1.32 7.43 22.54 0.17 -1.15 16 16 C -0.10 -1.58 9.66 22.23 0.21 -1.37 16 17 C -0.01 -0.13 5.88 -19.80 -0.12 -0.24 16 18 C -0.13 -1.77 8.62 71.23 0.61 -1.16 16 19 C -0.02 -0.78 6.47 36.34 0.24 -0.55 16 20 N -0.02 -0.66 4.51 -46.55 -0.21 -0.87 16 21 O -0.11 -3.44 17.74 3.53 0.06 -3.37 16 22 O -0.24 -9.73 19.77 3.51 0.07 -9.67 16 23 C -0.04 -1.38 9.28 22.54 0.21 -1.17 16 24 H 0.09 1.56 6.03 -2.39 -0.01 1.55 16 25 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.06 1.83 7.22 -2.39 -0.02 1.81 16 27 H 0.04 1.70 7.88 -2.39 -0.02 1.68 16 28 H 0.09 2.68 4.53 -2.39 -0.01 2.67 16 29 H 0.28 14.08 8.26 -92.71 -0.77 13.31 16 30 H 0.19 4.01 2.95 -2.91 -0.01 4.00 16 31 H 0.21 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.11 1.35 8.11 -2.39 -0.02 1.33 16 33 H 0.12 0.76 8.04 -2.39 -0.02 0.74 16 34 H 0.06 1.03 7.02 -2.38 -0.02 1.01 16 35 H 0.12 5.30 7.88 -2.91 -0.02 5.28 16 Total: -1.00 -78.92 306.35 5.89 -73.03 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 1.14 Total: 11.39 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 4.14 Total: -5.84 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: -1.50 Total: -67.30 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: 0.07 Total: -51.89 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.04 Total: 40.61 kcal Total: -78.92 5.89 -73.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044410956.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.287 kcal (2) G-P(sol) polarization free energy of solvation -78.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds