Wall clock time and date at job start Tue Mar 31 2020 01:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47320 * 2 1 4 4 C 1.33328 * 119.99778 * 84.54863 * 3 2 1 5 5 H 1.08005 * 119.99412 * 170.98452 * 4 3 2 6 6 C 1.46786 * 120.00388 * 350.97399 * 4 3 2 7 7 N 1.29313 * 119.99658 * 2.61356 * 6 4 3 8 8 Si 1.86792 * 119.99997 * 182.60829 * 6 4 3 9 9 H 1.48498 * 109.47173 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47218 * 120.00166 * 8 6 4 11 11 H 1.48496 * 109.47402 * 240.00111 * 8 6 4 12 12 C 1.34777 * 119.99587 * 264.54717 * 3 2 1 13 13 O 1.21473 * 119.99798 * 184.18162 * 12 3 2 14 14 C 1.47700 * 119.99943 * 4.46471 * 12 3 2 15 15 C 1.39688 * 120.14929 * 299.45807 * 14 12 3 16 16 C 1.37912 * 119.83941 * 180.02562 * 15 14 12 17 17 C 1.38403 * 120.15481 * 359.97438 * 16 15 14 18 18 C 1.38357 * 120.30968 * 0.02562 * 17 16 15 19 19 N 1.48015 * 119.92408 * 180.02562 * 18 17 16 20 20 O 1.31699 * 119.99869 * 6.95982 * 19 18 17 21 21 O 1.31701 * 119.99911 * 186.96864 * 19 18 17 22 22 C 1.37956 * 120.15310 * 359.71926 * 18 17 16 23 23 C 1.50698 * 120.07620 * 180.29573 * 22 18 17 24 24 H 1.08999 * 109.46839 * 60.00291 * 1 2 3 25 25 H 1.09008 * 109.46986 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47532 * 300.00562 * 1 2 3 27 27 H 1.08994 * 109.47532 * 239.99438 * 2 1 3 28 28 H 1.08999 * 109.46839 * 119.99709 * 2 1 3 29 29 H 0.97003 * 119.99503 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.07853 * 359.97438 * 15 14 12 31 31 H 1.08002 * 119.92137 * 180.02562 * 16 15 14 32 32 H 1.07997 * 119.84300 * 180.02562 * 17 16 15 33 33 H 1.08997 * 109.47445 * 277.98119 * 23 22 18 34 34 H 1.08998 * 109.47111 * 37.98722 * 23 22 18 35 35 H 1.09011 * 109.46578 * 157.98519 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1372 2.0463 1.1495 5 1 2.6309 3.0066 1.1691 6 6 1.5967 1.4734 2.3882 7 7 1.0504 0.3014 2.3739 8 14 1.6983 2.4372 3.9850 9 1 2.3638 3.7409 3.7348 10 1 0.3289 2.6735 4.5085 11 1 2.4824 1.6638 4.9810 12 6 2.3476 1.9795 -1.1620 13 8 2.8238 3.0970 -1.1561 14 6 2.1234 1.2789 -2.4428 15 6 2.7615 0.0628 -2.6983 16 6 2.5480 -0.5856 -3.8966 17 6 1.7035 -0.0345 -4.8446 18 6 1.0683 1.1697 -4.5981 19 7 0.1665 1.7511 -5.6176 20 8 -0.1387 1.0610 -6.6971 21 8 -0.3305 2.9585 -5.4455 22 6 1.2686 1.8266 -3.4016 23 6 0.5706 3.1348 -3.1322 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 0.6936 -0.0773 3.1926 30 1 3.4210 -0.3681 -1.9596 31 1 3.0404 -1.5261 -4.0954 32 1 1.5397 -0.5468 -5.7811 33 1 1.1254 3.9463 -3.6030 34 1 -0.4388 3.0991 -3.5419 35 1 0.5205 3.3050 -2.0566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044410974.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:38 Heat of formation + Delta-G solvation = 45.158808 kcal Electronic energy + Delta-G solvation = -22053.081452 eV Core-core repulsion = 18636.162338 eV Total energy + Delta-G solvation = -3416.919114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.48632 -38.84818 -37.57803 -35.40383 -34.44819 -32.71104 -32.37918 -31.46042 -29.68017 -27.82026 -25.96064 -25.17180 -23.14841 -22.16359 -21.68932 -19.72276 -18.10222 -17.85183 -17.18302 -16.20172 -16.02482 -15.85191 -15.50878 -14.94948 -14.37124 -13.75025 -13.55296 -13.32514 -13.10010 -13.00239 -12.44331 -12.18996 -12.06486 -11.99377 -11.76938 -11.38724 -11.24916 -11.06841 -10.93562 -10.59709 -10.47538 -10.36721 -10.26425 -10.19685 -9.36617 -9.08335 -8.91805 -8.56106 -8.21231 -6.67462 -3.88180 -0.49069 0.99218 1.25190 1.30803 2.89170 3.06664 3.12427 3.24885 3.70229 3.88219 4.35165 4.49329 4.73491 4.76109 4.86957 4.97618 5.13654 5.23920 5.63077 5.68691 5.84852 5.95195 5.95828 6.01572 6.14192 6.33470 6.40865 6.44501 6.48064 6.62653 6.65641 6.90251 6.99229 7.28001 7.39941 7.76979 8.23946 8.89132 9.15653 9.81953 10.19580 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027719 B = 0.005277 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.890915 B = 5304.974563 C = 5583.906207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.098 3.902 3 N -0.394 5.394 4 C -0.331 4.331 5 H 0.114 0.886 6 C 0.036 3.964 7 N -0.834 5.834 8 Si 0.935 3.065 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.438 3.562 13 O -0.589 6.589 14 C -0.078 4.078 15 C -0.045 4.045 16 C -0.128 4.128 17 C -0.060 4.060 18 C -0.013 4.013 19 N -0.008 5.008 20 O -0.198 6.198 21 O -0.169 6.169 22 C 0.020 3.980 23 C -0.128 4.128 24 H 0.018 0.982 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.037 0.963 28 H 0.123 0.877 29 H 0.277 0.723 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 -5.646 -5.515 7.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 N -0.107 5.107 4 C -0.460 4.460 5 H 0.131 0.869 6 C -0.175 4.175 7 N -0.469 5.469 8 Si 0.761 3.239 9 H -0.185 1.185 10 H -0.203 1.203 11 H -0.204 1.204 12 C 0.228 3.772 13 O -0.477 6.477 14 C -0.082 4.082 15 C -0.065 4.065 16 C -0.147 4.147 17 C -0.080 4.080 18 C -0.100 4.100 19 N 0.466 4.534 20 O -0.385 6.385 21 O -0.362 6.362 22 C 0.017 3.983 23 C -0.184 4.184 24 H 0.037 0.963 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.056 0.944 28 H 0.141 0.859 29 H 0.090 0.910 30 H 0.163 0.837 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.982 -5.529 -4.892 7.448 hybrid contribution -0.380 0.197 0.363 0.562 sum 0.602 -5.332 -4.529 7.022 Atomic orbital electron populations 1.22082 0.96502 0.99939 1.01207 1.22144 0.95123 0.83460 1.01757 1.42740 1.51404 1.11486 1.05053 1.20778 1.36890 1.05044 0.83281 0.86853 1.26886 0.94737 0.95698 1.00173 1.69093 1.33032 1.15529 1.29285 0.85687 0.78466 0.80199 0.79568 1.18542 1.20276 1.20352 1.17204 0.90528 0.87243 0.82234 1.90612 1.51280 1.19962 1.85813 1.20286 0.96407 0.94983 0.96551 1.21873 0.95630 0.92705 0.96258 1.21057 0.99370 1.01202 0.93045 1.21024 0.94041 0.91948 1.00942 1.20092 1.01542 0.98601 0.89815 1.50413 0.99185 1.01787 1.01967 1.96231 1.66101 1.60286 1.15892 1.96213 1.56706 0.99758 1.83561 1.19934 0.92588 0.96427 0.89358 1.21326 1.00612 0.92037 1.04415 0.96285 0.94123 0.89628 0.94445 0.85919 0.91018 0.83657 0.83513 0.83206 0.89068 0.88990 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.48 37.16 0.35 -2.41 16 2 C 0.10 1.99 5.23 -4.04 -0.02 1.97 16 3 N -0.39 -9.20 2.54 -114.38 -0.29 -9.50 16 4 C -0.33 -8.32 9.71 -13.45 -0.13 -8.45 16 5 H 0.11 3.07 7.22 -52.48 -0.38 2.69 16 6 C 0.04 0.82 5.38 -15.16 -0.08 0.73 16 7 N -0.83 -18.54 7.46 56.00 0.42 -18.12 16 8 Si 0.94 18.42 29.65 -169.99 -5.04 13.38 16 9 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 10 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 11 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 12 C 0.44 10.11 5.76 -12.40 -0.07 10.04 16 13 O -0.59 -15.66 15.91 5.39 0.09 -15.58 16 14 C -0.08 -1.46 4.94 -104.97 -0.52 -1.98 16 15 C -0.05 -0.67 7.58 -39.16 -0.30 -0.97 16 16 C -0.13 -1.51 10.03 -39.64 -0.40 -1.91 16 17 C -0.06 -0.79 9.58 -39.48 -0.38 -1.17 16 18 C -0.01 -0.22 6.85 -80.01 -0.55 -0.77 16 19 N -0.01 -0.14 4.98 33.93 0.17 0.03 16 20 O -0.20 -3.46 19.16 -31.57 -0.60 -4.07 16 21 O -0.17 -3.10 15.97 -31.57 -0.50 -3.60 16 22 C 0.02 0.36 5.92 -104.20 -0.62 -0.26 16 23 C -0.13 -2.35 8.00 36.00 0.29 -2.06 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.09 1.90 6.05 -51.93 -0.31 1.58 16 27 H 0.04 0.65 4.31 -51.93 -0.22 0.43 16 28 H 0.12 2.66 5.76 -51.93 -0.30 2.36 16 29 H 0.28 5.76 8.26 -40.82 -0.34 5.42 16 30 H 0.15 1.95 7.41 -52.49 -0.39 1.56 16 31 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.15 1.65 7.58 -52.49 -0.40 1.25 16 33 H 0.09 1.64 8.13 -51.93 -0.42 1.22 16 34 H 0.09 1.59 5.87 -51.93 -0.30 1.29 16 35 H 0.08 1.70 6.59 -51.92 -0.34 1.35 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -27.80 296.98 -7.18 -34.99 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -3.47 Total: 5.22 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -2.42 Total: -7.23 kcal Atomic # 7 Polarization: -27.88 SS G_CDS: 0.30 Total: -27.58 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -1.02 Total: -23.24 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.04 Total: 13.38 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.80 -7.18 -34.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044410974.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.146 kcal (2) G-P(sol) polarization free energy of solvation -27.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds