Wall clock time and date at job start Tue Mar 31 2020 01:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47320 * 2 1 4 4 C 1.33328 * 119.99778 * 84.54863 * 3 2 1 5 5 H 1.08005 * 119.99412 * 170.98452 * 4 3 2 6 6 C 1.46786 * 120.00388 * 350.97399 * 4 3 2 7 7 N 1.29313 * 119.99658 * 2.61356 * 6 4 3 8 8 Si 1.86792 * 119.99997 * 182.60829 * 6 4 3 9 9 H 1.48498 * 109.47173 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47218 * 120.00166 * 8 6 4 11 11 H 1.48496 * 109.47402 * 240.00111 * 8 6 4 12 12 C 1.34777 * 119.99587 * 264.54717 * 3 2 1 13 13 O 1.21473 * 119.99798 * 184.18162 * 12 3 2 14 14 C 1.47700 * 119.99943 * 4.46471 * 12 3 2 15 15 C 1.39688 * 120.14929 * 299.45807 * 14 12 3 16 16 C 1.37912 * 119.83941 * 180.02562 * 15 14 12 17 17 C 1.38403 * 120.15481 * 359.97438 * 16 15 14 18 18 C 1.38357 * 120.30968 * 0.02562 * 17 16 15 19 19 N 1.48015 * 119.92408 * 180.02562 * 18 17 16 20 20 O 1.31699 * 119.99869 * 6.95982 * 19 18 17 21 21 O 1.31701 * 119.99911 * 186.96864 * 19 18 17 22 22 C 1.37956 * 120.15310 * 359.71926 * 18 17 16 23 23 C 1.50698 * 120.07620 * 180.29573 * 22 18 17 24 24 H 1.08999 * 109.46839 * 60.00291 * 1 2 3 25 25 H 1.09008 * 109.46986 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47532 * 300.00562 * 1 2 3 27 27 H 1.08994 * 109.47532 * 239.99438 * 2 1 3 28 28 H 1.08999 * 109.46839 * 119.99709 * 2 1 3 29 29 H 0.97003 * 119.99503 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.07853 * 359.97438 * 15 14 12 31 31 H 1.08002 * 119.92137 * 180.02562 * 16 15 14 32 32 H 1.07997 * 119.84300 * 180.02562 * 17 16 15 33 33 H 1.08997 * 109.47445 * 277.98119 * 23 22 18 34 34 H 1.08998 * 109.47111 * 37.98722 * 23 22 18 35 35 H 1.09011 * 109.46578 * 157.98519 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1372 2.0463 1.1495 5 1 2.6309 3.0066 1.1691 6 6 1.5967 1.4734 2.3882 7 7 1.0504 0.3014 2.3739 8 14 1.6983 2.4372 3.9850 9 1 2.3638 3.7409 3.7348 10 1 0.3289 2.6735 4.5085 11 1 2.4824 1.6638 4.9810 12 6 2.3476 1.9795 -1.1620 13 8 2.8238 3.0970 -1.1561 14 6 2.1234 1.2789 -2.4428 15 6 2.7615 0.0628 -2.6983 16 6 2.5480 -0.5856 -3.8966 17 6 1.7035 -0.0345 -4.8446 18 6 1.0683 1.1697 -4.5981 19 7 0.1665 1.7511 -5.6176 20 8 -0.1387 1.0610 -6.6971 21 8 -0.3305 2.9585 -5.4455 22 6 1.2686 1.8266 -3.4016 23 6 0.5706 3.1348 -3.1322 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 0.6936 -0.0773 3.1926 30 1 3.4210 -0.3681 -1.9596 31 1 3.0404 -1.5261 -4.0954 32 1 1.5397 -0.5468 -5.7811 33 1 1.1254 3.9463 -3.6030 34 1 -0.4388 3.0991 -3.5419 35 1 0.5205 3.3050 -2.0566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044410974.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:38 Heat of formation + Delta-G solvation = 29.958204 kcal Electronic energy + Delta-G solvation = -22053.740600 eV Core-core repulsion = 18636.162338 eV Total energy + Delta-G solvation = -3417.578262 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.86685 -40.39327 -38.98476 -37.18536 -35.82340 -34.19349 -33.91183 -32.86591 -31.34348 -29.20632 -27.30036 -26.83931 -24.67802 -23.71831 -22.98925 -21.23354 -19.55725 -19.18532 -18.93445 -17.76992 -17.28953 -17.15956 -16.90201 -16.63163 -16.02124 -15.23918 -14.99619 -14.77848 -14.73160 -14.47032 -13.91296 -13.66072 -13.48224 -13.41665 -13.25939 -12.88692 -12.78132 -12.65901 -12.43644 -12.15428 -12.09451 -11.98304 -11.86355 -11.59905 -10.91180 -10.62387 -10.41881 -10.10268 -9.95167 -8.43020 -5.76575 -1.82673 -0.24611 -0.00006 0.00682 1.29377 1.42335 1.51934 1.84035 2.17542 2.28147 2.81100 3.01560 3.28982 3.40483 3.61091 3.76634 3.86000 3.93446 4.36479 4.38346 4.43835 4.46326 4.59251 4.76679 4.78932 4.85508 4.91521 5.00796 5.06599 5.10408 5.14683 5.40251 5.55778 5.61450 5.72796 5.93616 6.44362 7.10342 7.40069 8.05768 8.41680 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027719 B = 0.005277 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.890915 B = 5304.974563 C = 5583.906207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.100 3.900 3 N -0.402 5.402 4 C -0.383 4.383 5 H 0.076 0.924 6 C 0.018 3.982 7 N -0.831 5.831 8 Si 0.991 3.009 9 H -0.280 1.280 10 H -0.269 1.269 11 H -0.261 1.261 12 C 0.430 3.570 13 O -0.642 6.642 14 C -0.104 4.104 15 C -0.037 4.037 16 C -0.098 4.098 17 C -0.036 4.036 18 C -0.024 4.024 19 N -0.007 5.007 20 O -0.171 6.171 21 O -0.217 6.217 22 C 0.000 4.000 23 C -0.118 4.118 24 H 0.012 0.988 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.287 0.713 30 H 0.163 0.837 31 H 0.207 0.793 32 H 0.187 0.813 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 -9.465 -6.806 11.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.021 4.021 3 N -0.114 5.114 4 C -0.512 4.512 5 H 0.094 0.906 6 C -0.193 4.193 7 N -0.465 5.465 8 Si 0.814 3.186 9 H -0.204 1.204 10 H -0.194 1.194 11 H -0.186 1.186 12 C 0.222 3.778 13 O -0.533 6.533 14 C -0.108 4.108 15 C -0.056 4.056 16 C -0.116 4.116 17 C -0.055 4.055 18 C -0.111 4.111 19 N 0.465 4.535 20 O -0.368 6.368 21 O -0.399 6.399 22 C -0.003 4.003 23 C -0.174 4.174 24 H 0.032 0.968 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.129 0.871 29 H 0.100 0.900 30 H 0.180 0.820 31 H 0.224 0.776 32 H 0.204 0.796 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.252 -9.301 -6.132 11.211 hybrid contribution -0.445 1.200 0.621 1.423 sum 0.807 -8.101 -5.511 9.831 Atomic orbital electron populations 1.21952 0.96238 1.01052 0.99553 1.22185 0.95246 0.81987 1.02723 1.42864 1.51272 1.12545 1.04713 1.20511 1.40324 1.04985 0.85415 0.90630 1.27413 0.93791 0.96479 1.01603 1.69119 1.31585 1.15411 1.30337 0.84909 0.78627 0.78392 0.76660 1.20446 1.19414 1.18610 1.17863 0.89312 0.86961 0.83685 1.90549 1.53338 1.22400 1.87020 1.19928 0.98950 0.97094 0.94821 1.22178 0.94518 0.90758 0.98101 1.21651 0.97380 1.02127 0.90398 1.21636 0.91743 0.89806 1.02305 1.20284 1.02172 0.99699 0.88989 1.50584 0.99176 1.01709 1.02054 1.96196 1.64957 1.59795 1.15802 1.96237 1.58706 1.00552 1.84370 1.19803 0.93490 0.96375 0.90595 1.21147 1.01238 0.93068 1.01989 0.96849 0.91403 0.92359 0.91183 0.87136 0.90029 0.81970 0.77615 0.79613 0.89846 0.88425 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 9.48 71.98 0.68 -4.39 16 2 C 0.10 4.01 5.23 86.38 0.45 4.47 16 3 N -0.40 -19.51 2.54 -634.10 -1.61 -21.12 16 4 C -0.38 -20.45 9.71 86.70 0.84 -19.61 16 5 H 0.08 4.49 7.22 -2.91 -0.02 4.47 16 6 C 0.02 0.85 5.38 87.30 0.47 1.32 16 7 N -0.83 -36.69 7.46 23.26 0.17 -36.52 16 8 Si 0.99 38.41 29.65 68.60 2.03 40.44 16 9 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 11 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 12 C 0.43 20.85 5.76 86.74 0.50 21.35 16 13 O -0.64 -36.83 15.91 -3.63 -0.06 -36.88 16 14 C -0.10 -3.85 4.94 -20.09 -0.10 -3.95 16 15 C -0.04 -0.95 7.58 22.54 0.17 -0.78 16 16 C -0.10 -1.67 10.03 22.23 0.22 -1.44 16 17 C -0.04 -0.74 9.58 22.34 0.21 -0.53 16 18 C -0.02 -0.74 6.85 36.34 0.25 -0.49 16 19 N -0.01 -0.24 4.98 -46.56 -0.23 -0.47 16 20 O -0.17 -5.42 19.16 3.52 0.07 -5.35 16 21 O -0.22 -8.12 15.97 3.51 0.06 -8.06 16 22 C 0.00 0.01 5.92 -19.59 -0.12 -0.11 16 23 C -0.12 -4.66 8.00 71.24 0.57 -4.09 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 26 H 0.06 2.59 6.05 -2.39 -0.01 2.58 16 27 H 0.07 2.28 4.31 -2.39 -0.01 2.27 16 28 H 0.11 4.70 5.76 -2.39 -0.01 4.69 16 29 H 0.29 11.57 8.26 -92.71 -0.77 10.80 16 30 H 0.16 3.69 7.41 -2.91 -0.02 3.67 16 31 H 0.21 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.19 2.69 7.58 -2.91 -0.02 2.66 16 33 H 0.08 3.29 8.13 -2.39 -0.02 3.27 16 34 H 0.10 3.63 5.87 -2.39 -0.01 3.62 16 35 H 0.05 2.29 6.59 -2.38 -0.02 2.28 16 Total: -1.00 -66.61 296.98 5.73 -60.88 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.14 Total: 15.34 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 4.16 Total: -8.25 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -1.67 Total: -58.11 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: 0.07 Total: -50.30 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -66.61 5.73 -60.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044410974.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.839 kcal (2) G-P(sol) polarization free energy of solvation -66.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds