Wall clock time and date at job start Tue Mar 31 2020 01:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47224 * 2 1 4 4 C 1.33330 * 120.00143 * 275.32065 * 3 2 1 5 5 H 1.08002 * 120.00407 * 145.71969 * 4 3 2 6 6 C 1.46787 * 119.99843 * 325.71946 * 4 3 2 7 7 N 1.29315 * 120.00049 * 338.12554 * 6 4 3 8 8 Si 1.86808 * 119.99896 * 158.12074 * 6 4 3 9 9 H 1.48500 * 109.47011 * 60.00176 * 8 6 4 10 10 H 1.48499 * 109.47067 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47013 * 299.99983 * 8 6 4 12 12 C 1.34773 * 120.00210 * 95.31990 * 3 2 1 13 13 O 1.21470 * 120.00260 * 180.27973 * 12 3 2 14 14 C 1.47705 * 119.99926 * 0.02562 * 12 3 2 15 15 C 1.39683 * 120.14858 * 89.72030 * 14 12 3 16 16 C 1.50694 * 120.08221 * 0.02671 * 15 14 12 17 17 C 1.37912 * 119.84148 * 179.76773 * 15 14 12 18 18 C 1.38409 * 120.15309 * 0.49396 * 17 15 14 19 19 C 1.38360 * 120.30475 * 359.78157 * 18 17 15 20 20 C 1.37944 * 120.15722 * 359.96087 * 19 18 17 21 21 N 1.48020 * 120.08129 * 180.02562 * 20 19 18 22 22 O 1.31702 * 119.99833 * 359.97438 * 21 20 19 23 23 O 1.31697 * 120.00020 * 179.97438 * 21 20 19 24 24 H 1.09004 * 109.47332 * 60.00020 * 1 2 3 25 25 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47525 * 300.00204 * 1 2 3 27 27 H 1.08999 * 109.47010 * 240.00345 * 2 1 3 28 28 H 1.08994 * 109.47354 * 120.00121 * 2 1 3 29 29 H 0.96998 * 119.99900 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47641 * 89.99376 * 16 15 14 31 31 H 1.09002 * 109.47337 * 210.00379 * 16 15 14 32 32 H 1.09000 * 109.46805 * 329.99600 * 16 15 14 33 33 H 1.07995 * 119.92723 * 180.23035 * 17 15 14 34 34 H 1.07998 * 119.84578 * 179.76658 * 18 17 15 35 35 H 1.07998 * 119.91872 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1396 2.0455 -1.1497 5 1 1.9511 3.1084 -1.1818 6 6 2.5294 1.3320 -2.3719 7 7 3.1530 0.2021 -2.2900 8 14 2.1244 2.0563 -4.0455 9 1 2.7765 3.3835 -4.1815 10 1 2.6211 1.1488 -5.1109 11 1 0.6532 2.2120 -4.1747 12 6 2.3450 1.9805 1.1621 13 8 2.7451 3.1274 1.1626 14 6 2.2112 1.2445 2.4357 15 6 3.2797 0.4898 2.9255 16 6 4.5736 0.4243 2.1559 17 6 3.1494 -0.1910 4.1177 18 6 1.9600 -0.1359 4.8235 19 6 0.8958 0.6051 4.3413 20 6 1.0139 1.2953 3.1528 21 7 -0.1255 2.0880 2.6387 22 8 -1.2541 2.1346 3.3161 23 8 -0.0108 2.7467 1.5041 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.4108 -0.2691 -3.0976 30 1 5.2314 1.2300 2.4817 31 1 5.0567 -0.5356 2.3384 32 1 4.3685 0.5310 1.0907 33 1 3.9759 -0.7720 4.4995 34 1 1.8622 -0.6741 5.7547 35 1 -0.0296 0.6434 4.8968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049314.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:56 Heat of formation + Delta-G solvation = 32.020672 kcal Electronic energy + Delta-G solvation = -22789.211028 eV Core-core repulsion = 19371.722201 eV Total energy + Delta-G solvation = -3417.488827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.43138 -38.15273 -37.79946 -35.04617 -33.88943 -32.96495 -32.32227 -31.42385 -29.65684 -27.36929 -26.43557 -24.99652 -22.95807 -22.17849 -21.36643 -19.59459 -17.83752 -17.57478 -17.06679 -16.51130 -15.73430 -15.58192 -15.24510 -14.90009 -14.33505 -13.81344 -13.59785 -13.35294 -12.92355 -12.86420 -12.46093 -12.10952 -11.97103 -11.86493 -11.62851 -11.46694 -11.14915 -11.03347 -10.82635 -10.56321 -10.44821 -10.37782 -10.15809 -10.00375 -9.39006 -9.16932 -8.86861 -8.51144 -7.73992 -6.54419 -3.81319 -0.31529 0.99714 1.37806 1.57224 3.11169 3.17979 3.23778 3.34654 3.69781 4.04711 4.44000 4.49207 4.67480 4.81584 4.89370 5.00505 5.14478 5.35640 5.62005 5.67412 5.80046 5.84774 5.88517 5.98127 6.09126 6.17256 6.24976 6.29947 6.42326 6.46103 6.64841 6.88791 7.10860 7.25572 7.32364 8.10501 8.44154 9.06220 9.32848 10.02435 10.42944 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.007558 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.035861 B = 3703.838813 C = 4333.376547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.083 3.917 3 N -0.389 5.389 4 C -0.333 4.333 5 H 0.101 0.899 6 C 0.046 3.954 7 N -0.833 5.833 8 Si 0.923 3.077 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.268 1.268 12 C 0.473 3.527 13 O -0.564 6.564 14 C -0.017 4.017 15 C -0.059 4.059 16 C -0.121 4.121 17 C -0.072 4.072 18 C -0.122 4.122 19 C -0.067 4.067 20 C 0.011 3.989 21 N -0.023 5.023 22 O -0.211 6.211 23 O -0.111 6.111 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.031 0.969 27 H 0.119 0.881 28 H 0.041 0.959 29 H 0.277 0.723 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 -7.429 9.540 12.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.041 4.041 3 N -0.103 5.103 4 C -0.463 4.463 5 H 0.118 0.882 6 C -0.167 4.167 7 N -0.467 5.467 8 Si 0.748 3.252 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.193 1.193 12 C 0.262 3.738 13 O -0.449 6.449 14 C -0.022 4.022 15 C -0.061 4.061 16 C -0.177 4.177 17 C -0.091 4.091 18 C -0.140 4.140 19 C -0.086 4.086 20 C -0.076 4.076 21 N 0.456 4.544 22 O -0.393 6.393 23 O -0.315 6.315 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.136 0.864 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.329 -7.403 9.684 12.262 hybrid contribution -0.706 0.315 -0.745 1.074 sum 0.622 -7.088 8.939 11.425 Atomic orbital electron populations 1.22104 0.97621 0.99865 1.01926 1.21805 0.92797 0.85883 1.03632 1.42148 1.51702 1.11769 1.04698 1.20250 1.47572 0.95089 0.83376 0.88158 1.26968 0.93638 0.95505 1.00541 1.68831 1.30645 1.15997 1.31193 0.86053 0.79779 0.79417 0.79905 1.19184 1.20947 1.19302 1.17733 0.84920 0.88351 0.82845 1.90622 1.51750 1.17003 1.85508 1.20598 0.90409 0.93903 0.97277 1.20096 0.95749 0.94945 0.95293 1.20911 0.92476 1.02369 1.01938 1.21439 0.97822 0.96748 0.93068 1.21149 0.92216 0.99760 1.00922 1.20963 1.00922 0.93959 0.92759 1.20434 0.86540 1.02282 0.98335 1.50412 1.02652 0.99576 1.01798 1.96191 1.13696 1.71422 1.57992 1.96423 1.89664 1.41019 1.04397 0.91469 0.93395 0.95035 0.86393 0.94006 0.91091 0.90269 0.90903 0.89038 0.83960 0.83739 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 10.14 37.16 0.38 -2.86 16 2 C 0.08 1.83 5.68 -4.04 -0.02 1.81 16 3 N -0.39 -9.83 2.31 -114.38 -0.26 -10.10 16 4 C -0.33 -9.09 9.13 -13.45 -0.12 -9.22 16 5 H 0.10 2.95 7.74 -52.49 -0.41 2.54 16 6 C 0.05 1.15 5.18 -15.16 -0.08 1.08 16 7 N -0.83 -20.58 11.26 56.00 0.63 -19.95 16 8 Si 0.92 19.80 29.69 -169.99 -5.05 14.76 16 9 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 C 0.47 11.91 2.86 -12.39 -0.04 11.87 16 13 O -0.56 -16.40 16.69 -5.98 -0.10 -16.50 16 14 C -0.02 -0.34 3.85 -104.96 -0.40 -0.74 16 15 C -0.06 -0.96 5.49 -104.20 -0.57 -1.53 16 16 C -0.12 -1.88 9.62 36.00 0.35 -1.53 16 17 C -0.07 -0.85 9.69 -39.64 -0.38 -1.23 16 18 C -0.12 -1.33 10.04 -39.47 -0.40 -1.73 16 19 C -0.07 -0.95 9.57 -39.64 -0.38 -1.33 16 20 C 0.01 0.21 6.57 -79.53 -0.52 -0.31 16 21 N -0.02 -0.50 3.91 34.17 0.13 -0.37 16 22 O -0.21 -4.40 19.15 -31.57 -0.60 -5.01 16 23 O -0.11 -2.82 15.62 -36.35 -0.57 -3.39 16 24 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.03 0.66 5.32 -51.93 -0.28 0.39 16 27 H 0.12 2.76 5.26 -51.93 -0.27 2.49 16 28 H 0.04 0.85 6.35 -51.93 -0.33 0.52 16 29 H 0.28 6.37 8.26 -40.82 -0.34 6.03 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.09 1.80 7.08 -51.93 -0.37 1.43 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.15 1.85 7.57 -52.49 -0.40 1.45 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -32.01 303.98 -7.15 -39.16 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -3.72 Total: 2.54 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.19 Total: -5.72 kcal Atomic # 7 Polarization: -30.91 SS G_CDS: 0.50 Total: -30.41 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -1.27 Total: -24.90 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.05 Total: 14.76 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.01 -7.15 -39.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049314.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.181 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds