Wall clock time and date at job start Tue Mar 31 2020 01:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47224 * 2 1 4 4 C 1.33330 * 120.00143 * 275.32065 * 3 2 1 5 5 H 1.08002 * 120.00407 * 145.71969 * 4 3 2 6 6 C 1.46787 * 119.99843 * 325.71946 * 4 3 2 7 7 N 1.29315 * 120.00049 * 338.12554 * 6 4 3 8 8 Si 1.86808 * 119.99896 * 158.12074 * 6 4 3 9 9 H 1.48500 * 109.47011 * 60.00176 * 8 6 4 10 10 H 1.48499 * 109.47067 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47013 * 299.99983 * 8 6 4 12 12 C 1.34773 * 120.00210 * 95.31990 * 3 2 1 13 13 O 1.21470 * 120.00260 * 180.27973 * 12 3 2 14 14 C 1.47705 * 119.99926 * 0.02562 * 12 3 2 15 15 C 1.39683 * 120.14858 * 89.72030 * 14 12 3 16 16 C 1.50694 * 120.08221 * 0.02671 * 15 14 12 17 17 C 1.37912 * 119.84148 * 179.76773 * 15 14 12 18 18 C 1.38409 * 120.15309 * 0.49396 * 17 15 14 19 19 C 1.38360 * 120.30475 * 359.78157 * 18 17 15 20 20 C 1.37944 * 120.15722 * 359.96087 * 19 18 17 21 21 N 1.48020 * 120.08129 * 180.02562 * 20 19 18 22 22 O 1.31702 * 119.99833 * 359.97438 * 21 20 19 23 23 O 1.31697 * 120.00020 * 179.97438 * 21 20 19 24 24 H 1.09004 * 109.47332 * 60.00020 * 1 2 3 25 25 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47525 * 300.00204 * 1 2 3 27 27 H 1.08999 * 109.47010 * 240.00345 * 2 1 3 28 28 H 1.08994 * 109.47354 * 120.00121 * 2 1 3 29 29 H 0.96998 * 119.99900 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47641 * 89.99376 * 16 15 14 31 31 H 1.09002 * 109.47337 * 210.00379 * 16 15 14 32 32 H 1.09000 * 109.46805 * 329.99600 * 16 15 14 33 33 H 1.07995 * 119.92723 * 180.23035 * 17 15 14 34 34 H 1.07998 * 119.84578 * 179.76658 * 18 17 15 35 35 H 1.07998 * 119.91872 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1396 2.0455 -1.1497 5 1 1.9511 3.1084 -1.1818 6 6 2.5294 1.3320 -2.3719 7 7 3.1530 0.2021 -2.2900 8 14 2.1244 2.0563 -4.0455 9 1 2.7765 3.3835 -4.1815 10 1 2.6211 1.1488 -5.1109 11 1 0.6532 2.2120 -4.1747 12 6 2.3450 1.9805 1.1621 13 8 2.7451 3.1274 1.1626 14 6 2.2112 1.2445 2.4357 15 6 3.2797 0.4898 2.9255 16 6 4.5736 0.4243 2.1559 17 6 3.1494 -0.1910 4.1177 18 6 1.9600 -0.1359 4.8235 19 6 0.8958 0.6051 4.3413 20 6 1.0139 1.2953 3.1528 21 7 -0.1255 2.0880 2.6387 22 8 -1.2541 2.1346 3.3161 23 8 -0.0108 2.7467 1.5041 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.4108 -0.2691 -3.0976 30 1 5.2314 1.2300 2.4817 31 1 5.0567 -0.5356 2.3384 32 1 4.3685 0.5310 1.0907 33 1 3.9759 -0.7720 4.4995 34 1 1.8622 -0.6741 5.7547 35 1 -0.0296 0.6434 4.8968 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049314.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:55 Heat of formation + Delta-G solvation = 11.249345 kcal Electronic energy + Delta-G solvation = -22790.111740 eV Core-core repulsion = 19371.722201 eV Total energy + Delta-G solvation = -3418.389539 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.87337 -39.91688 -39.27490 -36.99059 -35.54729 -34.32867 -34.13004 -32.75980 -31.45911 -28.80314 -27.78911 -26.80244 -24.53209 -23.80574 -22.73227 -21.21848 -19.36721 -19.16970 -18.81333 -18.17988 -17.38622 -17.10582 -16.80451 -16.40817 -15.92654 -15.27653 -15.00874 -14.77999 -14.67407 -14.54325 -13.82048 -13.66643 -13.44739 -13.30449 -13.00650 -12.95136 -12.83147 -12.65440 -12.55816 -12.38533 -12.13693 -12.06853 -12.01171 -11.75744 -11.08599 -10.64264 -10.46240 -10.04227 -9.68382 -8.48586 -5.88183 -1.86640 -0.16367 0.05005 0.09486 1.32465 1.37972 1.46282 1.91737 2.19277 2.27933 2.82384 2.90398 3.24092 3.52543 3.72011 3.83443 3.91316 4.01577 4.09383 4.37846 4.43893 4.47474 4.57240 4.64362 4.69532 4.75745 4.79506 4.97014 5.10002 5.11686 5.22216 5.26484 5.39572 5.51730 5.59539 6.09400 6.43641 7.12475 7.42760 8.11936 8.48031 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020507 B = 0.007558 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.035861 B = 3703.838813 C = 4333.376547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.088 3.912 3 N -0.395 5.395 4 C -0.386 4.386 5 H 0.053 0.947 6 C 0.025 3.975 7 N -0.841 5.841 8 Si 0.979 3.021 9 H -0.276 1.276 10 H -0.256 1.256 11 H -0.270 1.270 12 C 0.473 3.527 13 O -0.631 6.631 14 C -0.055 4.055 15 C -0.073 4.073 16 C -0.118 4.118 17 C -0.035 4.035 18 C -0.088 4.088 19 C -0.054 4.054 20 C -0.018 4.018 21 N -0.014 5.014 22 O -0.148 6.148 23 O -0.241 6.241 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.023 0.977 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.288 0.712 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.038 0.962 33 H 0.201 0.799 34 H 0.211 0.789 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 -11.638 13.410 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.035 4.035 3 N -0.108 5.108 4 C -0.515 4.515 5 H 0.071 0.929 6 C -0.187 4.187 7 N -0.473 5.473 8 Si 0.802 3.198 9 H -0.201 1.201 10 H -0.180 1.180 11 H -0.195 1.195 12 C 0.264 3.736 13 O -0.520 6.520 14 C -0.060 4.060 15 C -0.075 4.075 16 C -0.174 4.174 17 C -0.053 4.053 18 C -0.106 4.106 19 C -0.074 4.074 20 C -0.106 4.106 21 N 0.458 4.542 22 O -0.354 6.354 23 O -0.413 6.413 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.042 0.958 27 H 0.123 0.877 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.138 0.862 32 H 0.057 0.943 33 H 0.218 0.782 34 H 0.228 0.772 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.779 -11.565 13.286 17.705 hybrid contribution -0.847 1.424 -1.465 2.212 sum 0.932 -10.142 11.822 15.604 Atomic orbital electron populations 1.22024 0.96631 1.01562 1.00401 1.21791 0.93563 0.84416 1.03693 1.42186 1.51676 1.12545 1.04373 1.19903 1.51700 0.93856 0.86066 0.92880 1.27537 0.92788 0.95854 1.02554 1.68831 1.29750 1.16174 1.32555 0.85252 0.79246 0.78758 0.76558 1.20102 1.18016 1.19521 1.18317 0.83084 0.87663 0.84566 1.90528 1.54363 1.20137 1.87010 1.20292 0.93184 0.96498 0.96048 1.20380 0.94326 0.95362 0.97424 1.20895 0.92983 1.04877 0.98658 1.22122 0.99763 0.93604 0.89810 1.21961 0.89828 0.96916 1.01899 1.21584 1.03337 0.92199 0.90247 1.20894 0.85115 1.04034 1.00541 1.50882 1.03168 0.98923 1.01191 1.96101 1.14516 1.68418 1.56404 1.96490 1.90890 1.46771 1.07199 0.93899 0.89669 0.95800 0.87729 0.92060 0.89957 0.90399 0.86241 0.94334 0.78158 0.77223 0.80365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.36 10.14 71.98 0.73 -5.63 16 2 C 0.09 4.12 5.68 86.38 0.49 4.61 16 3 N -0.39 -21.80 2.31 -634.11 -1.46 -23.26 16 4 C -0.39 -23.39 9.13 86.70 0.79 -22.60 16 5 H 0.05 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.02 1.32 5.18 87.30 0.45 1.77 16 7 N -0.84 -43.03 11.26 23.26 0.26 -42.76 16 8 Si 0.98 42.76 29.69 68.60 2.04 44.79 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 C 0.47 26.00 2.86 86.75 0.25 26.25 16 13 O -0.63 -41.08 16.69 7.25 0.12 -40.96 16 14 C -0.06 -2.29 3.85 -20.09 -0.08 -2.37 16 15 C -0.07 -2.20 5.49 -19.59 -0.11 -2.30 16 16 C -0.12 -3.55 9.62 71.23 0.69 -2.87 16 17 C -0.04 -0.57 9.69 22.23 0.22 -0.35 16 18 C -0.09 -1.17 10.04 22.34 0.22 -0.95 16 19 C -0.05 -1.25 9.57 22.23 0.21 -1.04 16 20 C -0.02 -0.69 6.57 36.65 0.24 -0.45 16 21 N -0.01 -0.64 3.91 -45.82 -0.18 -0.82 16 22 O -0.15 -5.97 19.15 3.51 0.07 -5.91 16 23 O -0.24 -13.50 15.62 8.09 0.13 -13.38 16 24 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 26 H 0.02 1.04 5.32 -2.39 -0.01 1.03 16 27 H 0.11 5.11 5.26 -2.39 -0.01 5.09 16 28 H 0.06 2.53 6.35 -2.39 -0.02 2.52 16 29 H 0.29 13.35 8.26 -92.71 -0.77 12.59 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.12 2.37 8.09 -2.39 -0.02 2.35 16 32 H 0.04 1.58 7.08 -2.39 -0.02 1.56 16 33 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 34 H 0.21 0.37 8.06 -2.91 -0.02 0.35 16 35 H 0.18 3.15 7.57 -2.91 -0.02 3.13 16 Total: -1.00 -86.04 303.98 6.20 -79.83 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.13 Total: 8.39 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 4.11 Total: -5.93 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -1.38 Total: -66.85 kcal Atomic # 8 Polarization: -60.56 SS G_CDS: 0.31 Total: -60.24 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.04 Total: 44.79 kcal Total: -86.04 6.20 -79.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049314.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.082 kcal (2) G-P(sol) polarization free energy of solvation -86.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds