Wall clock time and date at job start Tue Mar 31 2020 01:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47249 * 2 1 4 4 C 1.33329 * 120.00594 * 96.75366 * 3 2 1 5 5 H 1.07994 * 120.00325 * 160.69154 * 4 3 2 6 6 C 1.46790 * 119.99628 * 340.69516 * 4 3 2 7 7 N 1.29308 * 120.00066 * 358.04029 * 6 4 3 8 8 Si 1.86797 * 119.99578 * 178.04168 * 6 4 3 9 9 H 1.48494 * 109.47625 * 59.99802 * 8 6 4 10 10 H 1.48503 * 109.47106 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99883 * 8 6 4 12 12 C 1.34781 * 119.99599 * 276.75362 * 3 2 1 13 13 O 1.21474 * 120.00093 * 183.67616 * 12 3 2 14 14 C 1.47694 * 119.99902 * 3.68559 * 12 3 2 15 15 C 1.39690 * 120.14897 * 304.57535 * 14 12 3 16 16 C 1.37912 * 119.84385 * 180.02562 * 15 14 12 17 17 N 1.48014 * 119.92378 * 180.02562 * 16 15 14 18 18 O 1.31698 * 119.99822 * 180.02562 * 17 16 15 19 19 O 1.31700 * 119.99828 * 0.02562 * 17 16 15 20 20 C 1.38411 * 120.15174 * 0.02562 * 16 15 14 21 21 C 1.38356 * 120.30803 * 0.22895 * 20 16 15 22 22 C 1.37956 * 120.15390 * 359.49501 * 21 20 16 23 23 C 1.50702 * 120.07542 * 180.25414 * 22 21 20 24 24 H 1.09011 * 109.46848 * 300.00143 * 1 2 3 25 25 H 1.08994 * 109.47158 * 60.00423 * 1 2 3 26 26 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47090 * 239.99454 * 2 1 3 28 28 H 1.09001 * 109.46776 * 119.99627 * 2 1 3 29 29 H 0.97003 * 119.99989 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.08004 * 0.04831 * 15 14 12 31 31 H 1.07996 * 119.83938 * 179.97438 * 20 16 15 32 32 H 1.08001 * 119.92195 * 179.74150 * 21 20 16 33 33 H 1.09003 * 109.46922 * 273.85934 * 23 22 21 34 34 H 1.08992 * 109.47398 * 33.86031 * 23 22 21 35 35 H 1.09002 * 109.46988 * 153.86588 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3686 1.9645 1.1466 5 1 3.0059 2.8364 1.1363 6 6 1.8881 1.4217 2.4230 7 7 1.0946 0.4008 2.4336 8 14 2.4230 2.2058 4.0318 9 1 1.9883 3.6254 4.0593 10 1 1.8046 1.4760 5.1678 11 1 3.9020 2.1388 4.1475 12 6 2.1136 2.0622 -1.1592 13 8 2.5809 3.1834 -1.1683 14 6 1.6495 1.4454 -2.4183 15 6 2.1560 0.2076 -2.8216 16 6 1.7187 -0.3625 -3.9988 17 7 2.2538 -1.6742 -4.4274 18 8 1.8375 -2.2196 -5.5516 19 8 3.1462 -2.2959 -3.6847 20 6 0.7804 0.2893 -4.7803 21 6 0.2784 1.5179 -4.3895 22 6 0.7028 2.0971 -3.2115 23 6 0.1506 3.4328 -2.7848 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.7774 0.0418 3.2771 30 1 2.8881 -0.3020 -2.2128 31 1 0.4418 -0.1615 -5.7014 32 1 -0.4503 2.0229 -5.0062 33 1 0.7341 4.2307 -3.2441 34 1 -0.8890 3.5142 -3.1018 35 1 0.2075 3.5195 -1.6997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:42 Heat of formation + Delta-G solvation = 36.126233 kcal Electronic energy + Delta-G solvation = -22005.112931 eV Core-core repulsion = 18587.802135 eV Total energy + Delta-G solvation = -3417.310796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.43616 -38.80810 -37.67658 -35.34070 -34.26118 -32.99403 -32.43901 -31.19682 -29.66960 -28.44867 -25.48415 -24.85490 -23.56224 -22.19599 -21.62066 -19.83259 -18.07134 -17.95906 -17.08690 -16.35284 -15.80974 -15.60035 -15.41343 -14.95180 -14.41496 -14.08051 -13.69525 -13.43424 -13.12900 -12.97209 -12.23482 -12.13088 -12.05383 -11.88824 -11.54262 -11.41674 -11.27180 -11.15870 -10.99426 -10.93782 -10.55301 -10.53311 -10.40267 -10.16335 -9.26570 -9.08557 -9.01085 -8.58508 -8.13107 -6.71112 -3.91983 -0.51092 0.96144 1.27119 1.30313 2.94894 3.05548 3.08626 3.23454 3.74595 3.90275 4.39167 4.49436 4.66450 4.77675 4.82771 4.94874 5.17585 5.25278 5.59871 5.71009 5.77536 5.80996 5.84408 5.98843 6.03800 6.22565 6.36965 6.41614 6.47463 6.58972 6.64657 6.91270 6.94324 7.21143 7.39384 7.79867 8.23285 8.88242 9.14490 9.82213 10.21683 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021371 B = 0.005889 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.875833 B = 4753.373959 C = 5445.622881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.099 3.901 3 N -0.392 5.392 4 C -0.335 4.335 5 H 0.110 0.890 6 C 0.039 3.961 7 N -0.831 5.831 8 Si 0.936 3.064 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.268 1.268 12 C 0.441 3.559 13 O -0.588 6.588 14 C -0.075 4.075 15 C -0.034 4.034 16 C -0.016 4.016 17 N -0.010 5.010 18 O -0.187 6.187 19 O -0.177 6.177 20 C -0.060 4.060 21 C -0.124 4.124 22 C 0.002 3.998 23 C -0.120 4.120 24 H 0.087 0.913 25 H 0.022 0.978 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.116 0.884 29 H 0.280 0.720 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.696 0.064 -6.937 8.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 N -0.104 5.104 4 C -0.464 4.464 5 H 0.128 0.872 6 C -0.173 4.173 7 N -0.465 5.465 8 Si 0.761 3.239 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.193 1.193 12 C 0.231 3.769 13 O -0.475 6.475 14 C -0.080 4.080 15 C -0.055 4.055 16 C -0.102 4.102 17 N 0.467 4.533 18 O -0.378 6.378 19 O -0.370 6.370 20 C -0.079 4.079 21 C -0.143 4.143 22 C 0.000 4.000 23 C -0.176 4.176 24 H 0.106 0.894 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.134 0.866 29 H 0.092 0.908 30 H 0.175 0.825 31 H 0.168 0.832 32 H 0.165 0.835 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.809 0.992 -6.534 8.174 hybrid contribution 0.265 -0.480 0.564 0.787 sum -4.544 0.512 -5.970 7.520 Atomic orbital electron populations 1.22078 0.96391 1.00139 1.01497 1.21952 0.94997 0.83671 1.01756 1.42698 1.51386 1.10598 1.05745 1.20625 1.29710 1.14429 0.81617 0.87208 1.26977 0.94459 0.95577 1.00260 1.69018 1.27668 1.21075 1.28752 0.85831 0.79495 0.79599 0.78934 1.19263 1.20612 1.19267 1.17366 0.90001 0.86504 0.82998 1.90599 1.51770 1.19556 1.85622 1.20333 0.96971 0.92898 0.97776 1.21391 0.97614 0.94028 0.92433 1.20229 1.05121 0.84921 0.99979 1.50501 0.99044 1.02833 1.00885 1.96226 1.63569 1.69888 1.08162 1.96283 1.25054 1.64250 1.51451 1.21007 0.93273 0.94472 0.99196 1.20963 1.01840 0.94595 0.96873 1.20443 0.91335 0.96148 0.92036 1.20936 0.99887 0.92428 1.04323 0.89390 0.95931 0.94067 0.94358 0.86629 0.90760 0.82485 0.83169 0.83513 0.89626 0.91245 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.55 37.16 0.35 -2.50 16 2 C 0.10 2.11 5.01 -4.04 -0.02 2.09 16 3 N -0.39 -9.32 2.54 -114.38 -0.29 -9.61 16 4 C -0.33 -8.50 9.60 -13.45 -0.13 -8.63 16 5 H 0.11 2.96 7.34 -52.49 -0.39 2.57 16 6 C 0.04 0.91 5.46 -15.16 -0.08 0.83 16 7 N -0.83 -18.96 7.97 56.00 0.45 -18.51 16 8 Si 0.94 18.54 29.65 -169.99 -5.04 13.51 16 9 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 10 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 11 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 12 C 0.44 10.19 5.92 -12.40 -0.07 10.11 16 13 O -0.59 -15.33 15.68 5.39 0.08 -15.24 16 14 C -0.07 -1.41 4.25 -104.97 -0.45 -1.86 16 15 C -0.03 -0.61 7.34 -39.16 -0.29 -0.90 16 16 C -0.02 -0.26 6.88 -80.00 -0.55 -0.81 16 17 N -0.01 -0.17 4.98 33.93 0.17 -0.01 16 18 O -0.19 -3.26 19.14 -31.57 -0.60 -3.87 16 19 O -0.18 -3.36 19.14 -31.57 -0.60 -3.97 16 20 C -0.06 -0.79 9.57 -39.47 -0.38 -1.17 16 21 C -0.12 -1.53 9.70 -39.64 -0.38 -1.91 16 22 C 0.00 0.04 5.91 -104.20 -0.62 -0.58 16 23 C -0.12 -1.73 9.25 36.01 0.33 -1.39 16 24 H 0.09 1.94 6.29 -51.92 -0.33 1.61 16 25 H 0.02 0.42 7.34 -51.93 -0.38 0.04 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.76 4.20 -51.93 -0.22 0.54 16 28 H 0.12 2.64 5.83 -51.93 -0.30 2.34 16 29 H 0.28 5.99 8.26 -40.82 -0.34 5.65 16 30 H 0.16 2.86 6.23 -52.49 -0.33 2.53 16 31 H 0.15 1.65 7.57 -52.49 -0.40 1.25 16 32 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 35 H 0.09 1.54 6.68 -51.93 -0.35 1.19 16 LS Contribution 301.08 15.07 4.54 4.54 Total: -1.00 -27.74 301.08 -7.09 -34.83 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -3.51 Total: 5.05 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -2.28 Total: -6.72 kcal Atomic # 7 Polarization: -28.46 SS G_CDS: 0.32 Total: -28.13 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -1.12 Total: -23.07 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.04 Total: 13.51 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.74 -7.09 -34.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.952 kcal (2) G-P(sol) polarization free energy of solvation -27.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds