Wall clock time and date at job start Tue Mar 31 2020 01:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47249 * 2 1 4 4 C 1.33329 * 120.00594 * 96.75366 * 3 2 1 5 5 H 1.07994 * 120.00325 * 160.69154 * 4 3 2 6 6 C 1.46790 * 119.99628 * 340.69516 * 4 3 2 7 7 N 1.29308 * 120.00066 * 358.04029 * 6 4 3 8 8 Si 1.86797 * 119.99578 * 178.04168 * 6 4 3 9 9 H 1.48494 * 109.47625 * 59.99802 * 8 6 4 10 10 H 1.48503 * 109.47106 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99883 * 8 6 4 12 12 C 1.34781 * 119.99599 * 276.75362 * 3 2 1 13 13 O 1.21474 * 120.00093 * 183.67616 * 12 3 2 14 14 C 1.47694 * 119.99902 * 3.68559 * 12 3 2 15 15 C 1.39690 * 120.14897 * 304.57535 * 14 12 3 16 16 C 1.37912 * 119.84385 * 180.02562 * 15 14 12 17 17 N 1.48014 * 119.92378 * 180.02562 * 16 15 14 18 18 O 1.31698 * 119.99822 * 180.02562 * 17 16 15 19 19 O 1.31700 * 119.99828 * 0.02562 * 17 16 15 20 20 C 1.38411 * 120.15174 * 0.02562 * 16 15 14 21 21 C 1.38356 * 120.30803 * 0.22895 * 20 16 15 22 22 C 1.37956 * 120.15390 * 359.49501 * 21 20 16 23 23 C 1.50702 * 120.07542 * 180.25414 * 22 21 20 24 24 H 1.09011 * 109.46848 * 300.00143 * 1 2 3 25 25 H 1.08994 * 109.47158 * 60.00423 * 1 2 3 26 26 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47090 * 239.99454 * 2 1 3 28 28 H 1.09001 * 109.46776 * 119.99627 * 2 1 3 29 29 H 0.97003 * 119.99989 * 179.97438 * 7 6 4 30 30 H 1.07997 * 120.08004 * 0.04831 * 15 14 12 31 31 H 1.07996 * 119.83938 * 179.97438 * 20 16 15 32 32 H 1.08001 * 119.92195 * 179.74150 * 21 20 16 33 33 H 1.09003 * 109.46922 * 273.85934 * 23 22 21 34 34 H 1.08992 * 109.47398 * 33.86031 * 23 22 21 35 35 H 1.09002 * 109.46988 * 153.86588 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3686 1.9645 1.1466 5 1 3.0059 2.8364 1.1363 6 6 1.8881 1.4217 2.4230 7 7 1.0946 0.4008 2.4336 8 14 2.4230 2.2058 4.0318 9 1 1.9883 3.6254 4.0593 10 1 1.8046 1.4760 5.1678 11 1 3.9020 2.1388 4.1475 12 6 2.1136 2.0622 -1.1592 13 8 2.5809 3.1834 -1.1683 14 6 1.6495 1.4454 -2.4183 15 6 2.1560 0.2076 -2.8216 16 6 1.7187 -0.3625 -3.9988 17 7 2.2538 -1.6742 -4.4274 18 8 1.8375 -2.2196 -5.5516 19 8 3.1462 -2.2959 -3.6847 20 6 0.7804 0.2893 -4.7803 21 6 0.2784 1.5179 -4.3895 22 6 0.7028 2.0971 -3.2115 23 6 0.1506 3.4328 -2.7848 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.7774 0.0418 3.2771 30 1 2.8881 -0.3020 -2.2128 31 1 0.4418 -0.1615 -5.7014 32 1 -0.4503 2.0229 -5.0062 33 1 0.7341 4.2307 -3.2441 34 1 -0.8890 3.5142 -3.1018 35 1 0.2075 3.5195 -1.6997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:41 Heat of formation + Delta-G solvation = 20.981554 kcal Electronic energy + Delta-G solvation = -22005.769654 eV Core-core repulsion = 18587.802135 eV Total energy + Delta-G solvation = -3417.967519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.84781 -40.34991 -39.11586 -37.15716 -35.64524 -34.32112 -34.14012 -32.59133 -31.36228 -29.71782 -27.14480 -26.21513 -25.02697 -23.81947 -22.95680 -21.34902 -19.61485 -19.30296 -18.84450 -17.94781 -17.17201 -16.91159 -16.80401 -16.62133 -16.07346 -15.33237 -15.14233 -14.95691 -14.68029 -14.57924 -13.73710 -13.51495 -13.41215 -13.21809 -13.02116 -12.91041 -12.79778 -12.69770 -12.50743 -12.31587 -12.20198 -12.12038 -11.94871 -11.84803 -10.93691 -10.57715 -10.35711 -10.24184 -9.92020 -8.48961 -5.83846 -1.86934 -0.29297 -0.01945 0.00443 1.33413 1.40946 1.47900 1.81519 2.17657 2.28845 2.83097 2.95365 3.30531 3.38337 3.54054 3.70721 3.86591 3.90220 4.30540 4.41314 4.47466 4.56267 4.64621 4.71097 4.71741 4.75890 4.81433 4.98620 5.07838 5.12434 5.24804 5.40675 5.43867 5.55991 5.69810 5.92258 6.39952 7.05614 7.35647 8.02200 8.42342 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021371 B = 0.005889 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.875833 B = 4753.373959 C = 5445.622881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.104 3.896 3 N -0.404 5.404 4 C -0.388 4.388 5 H 0.078 0.922 6 C 0.017 3.983 7 N -0.836 5.836 8 Si 0.994 3.006 9 H -0.273 1.273 10 H -0.262 1.262 11 H -0.271 1.271 12 C 0.438 3.562 13 O -0.630 6.630 14 C -0.102 4.102 15 C -0.041 4.041 16 C -0.027 4.027 17 N -0.008 5.008 18 O -0.147 6.147 19 O -0.242 6.242 20 C -0.031 4.031 21 C -0.098 4.098 22 C 0.006 3.994 23 C -0.118 4.118 24 H 0.065 0.935 25 H 0.030 0.970 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.288 0.712 30 H 0.137 0.863 31 H 0.190 0.810 32 H 0.206 0.794 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.345 -0.134 -9.489 12.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.019 4.019 3 N -0.117 5.117 4 C -0.517 4.517 5 H 0.096 0.904 6 C -0.195 4.195 7 N -0.468 5.468 8 Si 0.817 3.183 9 H -0.198 1.198 10 H -0.186 1.186 11 H -0.196 1.196 12 C 0.230 3.770 13 O -0.521 6.521 14 C -0.107 4.107 15 C -0.062 4.062 16 C -0.114 4.114 17 N 0.467 4.533 18 O -0.352 6.352 19 O -0.419 6.419 20 C -0.051 4.051 21 C -0.116 4.116 22 C 0.005 3.995 23 C -0.174 4.174 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.100 0.900 30 H 0.155 0.845 31 H 0.207 0.793 32 H 0.223 0.777 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.375 0.729 -8.964 11.631 hybrid contribution 0.955 -0.384 1.072 1.486 sum -6.420 0.345 -7.892 10.180 Atomic orbital electron populations 1.21905 0.95060 1.01035 1.00725 1.21908 0.96000 0.82590 1.01382 1.42799 1.51832 1.11398 1.05651 1.20442 1.32474 1.15207 0.83545 0.90400 1.27581 0.94118 0.95805 1.01997 1.69060 1.27086 1.20916 1.29783 0.84998 0.78876 0.78552 0.75897 1.19824 1.18617 1.19604 1.17997 0.88677 0.86143 0.84224 1.90537 1.53352 1.21499 1.86690 1.19985 0.99583 0.94060 0.97036 1.21091 0.97785 0.93844 0.93437 1.20379 1.06248 0.84588 1.00165 1.50659 0.98826 1.03176 1.00657 1.96185 1.61928 1.69562 1.07555 1.96317 1.27574 1.65508 1.52546 1.21599 0.90370 0.93926 0.99159 1.21509 1.01221 0.93587 0.95253 1.20791 0.89979 0.96214 0.92551 1.20974 1.02767 0.92038 1.01652 0.91592 0.95113 0.92147 0.93106 0.88591 0.89980 0.84498 0.79305 0.77750 0.89031 0.86613 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 9.55 71.98 0.69 -4.49 16 2 C 0.10 4.60 5.01 86.38 0.43 5.04 16 3 N -0.40 -20.45 2.54 -634.10 -1.61 -22.06 16 4 C -0.39 -21.13 9.60 86.70 0.83 -20.30 16 5 H 0.08 4.60 7.34 -2.91 -0.02 4.58 16 6 C 0.02 0.80 5.46 87.30 0.48 1.28 16 7 N -0.84 -39.03 7.97 23.26 0.19 -38.84 16 8 Si 0.99 39.11 29.65 68.60 2.03 41.14 16 9 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 10 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 12 C 0.44 21.36 5.92 86.74 0.51 21.87 16 13 O -0.63 -35.02 15.68 -3.63 -0.06 -35.08 16 14 C -0.10 -3.85 4.25 -20.09 -0.09 -3.94 16 15 C -0.04 -1.46 7.34 22.54 0.17 -1.30 16 16 C -0.03 -0.82 6.88 36.34 0.25 -0.57 16 17 N -0.01 -0.26 4.98 -46.55 -0.23 -0.49 16 18 O -0.15 -4.60 19.14 3.52 0.07 -4.53 16 19 O -0.24 -9.44 19.14 3.51 0.07 -9.38 16 20 C -0.03 -0.65 9.57 22.34 0.21 -0.44 16 21 C -0.10 -1.80 9.70 22.23 0.22 -1.58 16 22 C 0.01 0.18 5.91 -19.59 -0.12 0.06 16 23 C -0.12 -3.14 9.25 71.24 0.66 -2.48 16 24 H 0.07 2.94 6.29 -2.38 -0.01 2.93 16 25 H 0.03 1.14 7.34 -2.39 -0.02 1.12 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 2.10 4.20 -2.39 -0.01 2.09 16 28 H 0.10 4.61 5.83 -2.39 -0.01 4.60 16 29 H 0.29 12.35 8.26 -92.71 -0.77 11.58 16 30 H 0.14 5.33 6.23 -2.91 -0.02 5.31 16 31 H 0.19 2.65 7.57 -2.91 -0.02 2.62 16 32 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.12 1.97 8.11 -2.39 -0.02 1.95 16 35 H 0.04 1.56 6.68 -2.39 -0.02 1.55 16 Total: -1.00 -66.55 301.08 5.84 -60.71 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.14 Total: 15.38 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 4.25 Total: -6.85 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -1.66 Total: -61.40 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: 0.08 Total: -48.99 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -66.55 5.84 -60.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.692 kcal (2) G-P(sol) polarization free energy of solvation -66.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds