Wall clock time and date at job start Tue Mar 31 2020 00:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.71344 * 2 1 4 4 C 1.52880 * 109.61723 * 239.69886 * 2 1 3 5 5 O 1.42959 * 109.29897 * 188.11211 * 4 2 1 6 6 C 1.42970 * 114.16582 * 62.45340 * 5 4 2 7 7 C 1.53290 * 109.21762 * 297.41658 * 6 5 4 8 8 N 1.47148 * 108.38617 * 52.30340 * 7 6 5 9 9 S 1.65608 * 120.98389 * 129.44101 * 8 7 6 10 10 O 1.42106 * 106.39964 * 344.36860 * 9 8 7 11 11 O 1.42098 * 106.40357 * 211.45187 * 9 8 7 12 12 N 1.65596 * 107.21992 * 97.90794 * 9 8 7 13 13 C 1.46498 * 120.00090 * 270.00379 * 12 9 8 14 14 C 1.46497 * 119.99828 * 89.99920 * 12 9 8 15 15 C 1.50696 * 109.47643 * 264.99827 * 14 12 9 16 16 H 1.08005 * 119.99867 * 0.28172 * 15 14 12 17 17 C 1.37872 * 120.00181 * 179.97438 * 15 14 12 18 18 N 1.31509 * 120.00495 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99858 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47444 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47265 * 120.00437 * 19 17 15 22 22 H 1.48497 * 109.47344 * 240.00040 * 19 17 15 23 23 H 1.09010 * 109.46949 * 293.09119 * 1 2 3 24 24 H 1.08993 * 109.47475 * 53.09100 * 1 2 3 25 25 H 1.09001 * 109.47692 * 173.09533 * 1 2 3 26 26 H 1.09004 * 109.58255 * 68.10065 * 4 2 1 27 27 H 1.08998 * 109.36825 * 308.00191 * 4 2 1 28 28 H 1.09000 * 109.50774 * 177.49702 * 6 5 4 29 29 H 1.08996 * 109.51315 * 57.34166 * 6 5 4 30 30 H 1.09001 * 109.68407 * 292.57493 * 7 6 5 31 31 H 1.08999 * 109.68107 * 172.02338 * 7 6 5 32 32 H 1.09002 * 109.46765 * 269.99805 * 13 12 9 33 33 H 1.09000 * 109.47187 * 30.00019 * 13 12 9 34 34 H 1.09002 * 109.47014 * 149.99955 * 13 12 9 35 35 H 1.09008 * 109.47154 * 145.00127 * 14 12 9 36 36 H 1.09001 * 109.47269 * 25.00260 * 14 12 9 37 37 H 0.96995 * 120.00416 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0432 -0.7266 -1.2433 5 8 3.4600 -0.8892 -1.1443 6 6 3.8812 -1.6923 -0.0390 7 6 3.4630 -1.0102 1.2685 8 7 2.0257 -0.7041 1.1933 9 16 0.9951 -1.1449 2.4124 10 8 1.6909 -2.1019 3.1995 11 8 -0.2607 -1.4066 1.8012 12 7 0.7784 0.1844 3.3758 13 6 1.6732 0.4195 4.5117 14 6 -0.3081 1.1253 3.0922 15 6 0.2183 2.2634 2.2564 16 1 1.2572 2.2816 1.9617 17 6 -0.6278 3.2783 1.8626 18 7 -1.8941 3.2535 2.2167 19 14 0.0246 4.6887 0.8260 20 1 1.4717 4.4825 0.5640 21 1 -0.7097 4.7360 -0.4639 22 1 -0.1697 5.9688 1.5533 23 1 -0.3633 0.4031 0.9454 24 1 -0.3634 0.6171 -0.8216 25 1 -0.3634 -1.0202 -0.1235 26 1 1.8050 -0.1424 -2.1323 27 1 1.5682 -1.7052 -1.3120 28 1 4.9653 -1.8027 -0.0615 29 1 3.4129 -2.6744 -0.1032 30 1 4.0286 -0.0875 1.3985 31 1 3.6524 -1.6788 2.1083 32 1 1.2673 -0.0643 5.4002 33 1 2.6573 0.0064 4.2906 34 1 1.7606 1.4914 4.6895 35 1 -0.7045 1.5159 4.0295 36 1 -1.1009 0.6116 2.5485 37 1 -2.4894 3.9673 1.9394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046802868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:11 Heat of formation + Delta-G solvation = -99.609247 kcal Electronic energy + Delta-G solvation = -22189.898100 eV Core-core repulsion = 18902.145324 eV Total energy + Delta-G solvation = -3287.752777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.16961 -37.00699 -35.63540 -35.28271 -34.77214 -32.55598 -32.18422 -28.02017 -27.53370 -25.88469 -25.10240 -22.73164 -22.31413 -21.08297 -18.29673 -17.11712 -17.00466 -16.49313 -16.21689 -15.70526 -15.18368 -14.93940 -14.70193 -14.37440 -13.99286 -13.46728 -13.28203 -12.64210 -12.48694 -12.36239 -12.22033 -12.01344 -11.68516 -11.45235 -11.38564 -11.17357 -11.15210 -10.90399 -10.79375 -10.58782 -10.26802 -10.20138 -10.03330 -9.80033 -9.53018 -8.57264 -8.49379 -8.06494 -6.16286 -4.22625 1.21257 3.20900 3.30182 3.31696 3.39533 3.94924 4.06917 4.32552 4.81289 4.95327 5.04538 5.17583 5.21116 5.38912 5.43209 5.51288 5.57378 5.65804 5.75956 5.91279 6.04349 6.08674 6.18660 6.28723 6.48504 6.51290 6.76218 6.93163 7.14621 7.23776 7.35031 7.45900 7.57252 7.81045 8.08351 8.82377 9.43429 10.91311 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017745 B = 0.009216 C = 0.007294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.536347 B = 3037.427835 C = 3838.008873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.130 3.870 3 H 0.083 0.917 4 C 0.053 3.947 5 O -0.383 6.383 6 C 0.053 3.947 7 C 0.084 3.916 8 N -1.004 6.004 9 S 2.785 3.215 10 O -1.002 7.002 11 O -0.972 6.972 12 N -0.997 5.997 13 C 0.108 3.892 14 C 0.240 3.760 15 C -0.537 4.537 16 H 0.063 0.937 17 C 0.067 3.933 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.284 1.284 23 H 0.113 0.887 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.053 0.947 28 H 0.101 0.899 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.054 0.946 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.900 -6.597 -2.759 11.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.024 3.976 3 H 0.101 0.899 4 C -0.025 4.025 5 O -0.301 6.301 6 C -0.026 4.026 7 C -0.043 4.043 8 N -0.844 5.844 9 S 2.795 3.205 10 O -0.987 6.987 11 O -0.956 6.956 12 N -0.839 5.839 13 C -0.039 4.039 14 C 0.118 3.882 15 C -0.576 4.576 16 H 0.082 0.918 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.717 3.283 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.210 1.210 23 H 0.131 0.869 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.120 0.880 27 H 0.071 0.929 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.441 -7.262 -2.741 11.467 hybrid contribution 0.336 1.336 -0.396 1.434 sum 8.776 -5.926 -3.137 11.045 Atomic orbital electron populations 1.22836 0.91245 1.03599 1.06724 1.21507 0.96219 0.96209 0.83688 0.89853 1.23042 0.80973 1.00159 0.98325 1.87902 1.22638 1.71849 1.47731 1.22873 1.00188 0.93454 0.86090 1.22041 0.81691 1.01156 0.99365 1.58356 1.18221 1.73726 1.34054 1.01878 0.73082 0.73258 0.72240 1.93496 1.75786 1.59806 1.69590 1.93675 1.41724 1.84653 1.75551 1.57663 1.41873 1.44312 1.40061 1.21199 0.91819 1.02564 0.88333 1.19314 0.83966 0.87288 0.97610 1.21537 0.96431 1.06627 1.33014 0.91838 1.24921 0.94698 0.98002 0.96045 1.69934 1.03933 1.33400 1.45307 0.86571 0.79217 0.82249 0.80221 1.19613 1.20774 1.20992 0.86895 0.92124 0.90518 0.88009 0.92864 0.88145 0.92943 0.90929 0.88392 0.93757 0.93053 0.90785 0.94391 0.92831 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.59 7.41 37.15 0.28 -3.32 16 2 C 0.13 2.25 3.69 -67.64 -0.25 2.00 16 3 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 4 C 0.05 0.78 6.27 37.10 0.23 1.01 16 5 O -0.38 -5.64 10.74 -35.23 -0.38 -6.02 16 6 C 0.05 0.66 6.99 37.31 0.26 0.92 16 7 C 0.08 1.18 6.73 -3.54 -0.02 1.16 16 8 N -1.00 -17.37 3.40 -106.27 -0.36 -17.73 16 9 S 2.78 55.11 5.73 -107.50 -0.62 54.50 16 10 O -1.00 -20.33 15.67 -57.17 -0.90 -21.22 16 11 O -0.97 -21.40 12.08 -57.17 -0.69 -22.09 16 12 N -1.00 -20.40 3.23 -123.05 -0.40 -20.80 16 13 C 0.11 1.85 10.31 59.85 0.62 2.46 16 14 C 0.24 5.75 4.70 -5.20 -0.02 5.73 16 15 C -0.54 -13.37 7.86 -34.44 -0.27 -13.64 16 16 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 17 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -24.40 13.29 55.43 0.74 -23.66 16 19 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H 0.11 2.55 2.25 -51.92 -0.12 2.43 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.08 1.46 6.58 -51.93 -0.34 1.12 16 26 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 27 H 0.05 0.75 8.10 -51.93 -0.42 0.32 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.10 1.31 6.80 -51.93 -0.35 0.96 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 34 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 35 H 0.04 0.96 8.11 -51.92 -0.42 0.54 16 36 H 0.05 1.39 5.84 -51.93 -0.30 1.09 16 37 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 301.07 15.07 4.54 4.54 Total: -1.00 -29.83 301.07 -7.65 -37.48 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.28 Total: 1.94 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 0.72 Total: -2.04 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.02 Total: -62.19 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -1.96 Total: -49.34 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 55.11 SS G_CDS: -0.62 Total: 54.50 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.83 -7.65 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046802868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.131 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds