Wall clock time and date at job start Tue Mar 31 2020 00:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.71344 * 2 1 4 4 C 1.52880 * 109.61723 * 239.69886 * 2 1 3 5 5 O 1.42959 * 109.29897 * 188.11211 * 4 2 1 6 6 C 1.42970 * 114.16582 * 62.45340 * 5 4 2 7 7 C 1.53290 * 109.21762 * 297.41658 * 6 5 4 8 8 N 1.47148 * 108.38617 * 52.30340 * 7 6 5 9 9 S 1.65608 * 120.98389 * 129.44101 * 8 7 6 10 10 O 1.42106 * 106.39964 * 344.36860 * 9 8 7 11 11 O 1.42098 * 106.40357 * 211.45187 * 9 8 7 12 12 N 1.65596 * 107.21992 * 97.90794 * 9 8 7 13 13 C 1.46498 * 120.00090 * 270.00379 * 12 9 8 14 14 C 1.46497 * 119.99828 * 89.99920 * 12 9 8 15 15 C 1.50696 * 109.47643 * 264.99827 * 14 12 9 16 16 H 1.08005 * 119.99867 * 0.28172 * 15 14 12 17 17 C 1.37872 * 120.00181 * 179.97438 * 15 14 12 18 18 N 1.31509 * 120.00495 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99858 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47444 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47265 * 120.00437 * 19 17 15 22 22 H 1.48497 * 109.47344 * 240.00040 * 19 17 15 23 23 H 1.09010 * 109.46949 * 293.09119 * 1 2 3 24 24 H 1.08993 * 109.47475 * 53.09100 * 1 2 3 25 25 H 1.09001 * 109.47692 * 173.09533 * 1 2 3 26 26 H 1.09004 * 109.58255 * 68.10065 * 4 2 1 27 27 H 1.08998 * 109.36825 * 308.00191 * 4 2 1 28 28 H 1.09000 * 109.50774 * 177.49702 * 6 5 4 29 29 H 1.08996 * 109.51315 * 57.34166 * 6 5 4 30 30 H 1.09001 * 109.68407 * 292.57493 * 7 6 5 31 31 H 1.08999 * 109.68107 * 172.02338 * 7 6 5 32 32 H 1.09002 * 109.46765 * 269.99805 * 13 12 9 33 33 H 1.09000 * 109.47187 * 30.00019 * 13 12 9 34 34 H 1.09002 * 109.47014 * 149.99955 * 13 12 9 35 35 H 1.09008 * 109.47154 * 145.00127 * 14 12 9 36 36 H 1.09001 * 109.47269 * 25.00260 * 14 12 9 37 37 H 0.96995 * 120.00416 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0432 -0.7266 -1.2433 5 8 3.4600 -0.8892 -1.1443 6 6 3.8812 -1.6923 -0.0390 7 6 3.4630 -1.0102 1.2685 8 7 2.0257 -0.7041 1.1933 9 16 0.9951 -1.1449 2.4124 10 8 1.6909 -2.1019 3.1995 11 8 -0.2607 -1.4066 1.8012 12 7 0.7784 0.1844 3.3758 13 6 1.6732 0.4195 4.5117 14 6 -0.3081 1.1253 3.0922 15 6 0.2183 2.2634 2.2564 16 1 1.2572 2.2816 1.9617 17 6 -0.6278 3.2783 1.8626 18 7 -1.8941 3.2535 2.2167 19 14 0.0246 4.6887 0.8260 20 1 1.4717 4.4825 0.5640 21 1 -0.7097 4.7360 -0.4639 22 1 -0.1697 5.9688 1.5533 23 1 -0.3633 0.4031 0.9454 24 1 -0.3634 0.6171 -0.8216 25 1 -0.3634 -1.0202 -0.1235 26 1 1.8050 -0.1424 -2.1323 27 1 1.5682 -1.7052 -1.3120 28 1 4.9653 -1.8027 -0.0615 29 1 3.4129 -2.6744 -0.1032 30 1 4.0286 -0.0875 1.3985 31 1 3.6524 -1.6788 2.1083 32 1 1.2673 -0.0643 5.4002 33 1 2.6573 0.0064 4.2906 34 1 1.7606 1.4914 4.6895 35 1 -0.7045 1.5159 4.0295 36 1 -1.1009 0.6116 2.5485 37 1 -2.4894 3.9673 1.9394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046802868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:10 Heat of formation + Delta-G solvation = -121.565787 kcal Electronic energy + Delta-G solvation = -22190.850207 eV Core-core repulsion = 18902.145324 eV Total energy + Delta-G solvation = -3288.704884 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.35253 -38.61031 -37.30228 -36.90931 -36.06775 -34.46616 -33.43849 -29.75635 -28.84579 -27.15848 -26.75534 -24.18150 -23.92667 -22.35430 -19.82967 -18.72410 -18.61851 -18.14563 -17.61033 -16.99162 -16.73000 -16.28916 -16.01314 -15.81265 -15.30857 -15.08777 -14.88172 -14.25783 -13.97864 -13.95181 -13.81319 -13.38700 -13.21241 -13.06355 -12.92829 -12.65989 -12.58937 -12.48964 -12.34624 -12.05347 -11.94649 -11.73385 -11.62745 -11.36086 -10.97653 -10.56362 -9.87773 -9.66660 -8.14580 -6.26420 -0.33358 1.42179 1.46022 1.55454 1.90505 2.43266 2.53772 2.90744 3.17728 3.35866 3.67928 3.83120 4.08180 4.15076 4.18852 4.24863 4.38047 4.63192 4.63642 4.68138 4.72161 4.79183 4.85558 4.93780 5.03180 5.12640 5.23912 5.33811 5.47136 5.57780 5.72789 5.80701 5.95660 6.11489 6.15641 6.84040 7.42748 8.93506 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017745 B = 0.009216 C = 0.007294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.536347 B = 3037.427835 C = 3838.008873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.131 3.869 3 H 0.074 0.926 4 C 0.058 3.942 5 O -0.390 6.390 6 C 0.050 3.950 7 C 0.076 3.924 8 N -1.003 6.003 9 S 2.794 3.206 10 O -1.007 7.007 11 O -0.999 6.999 12 N -1.005 6.005 13 C 0.099 3.901 14 C 0.255 3.745 15 C -0.527 4.527 16 H 0.067 0.933 17 C 0.019 3.981 18 N -0.925 5.925 19 Si 0.949 3.051 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.285 1.285 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.121 0.879 27 H 0.059 0.941 28 H 0.135 0.865 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.017 0.983 36 H 0.028 0.972 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.187 -6.696 -3.750 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.025 3.975 3 H 0.092 0.908 4 C -0.020 4.020 5 O -0.308 6.308 6 C -0.028 4.028 7 C -0.050 4.050 8 N -0.845 5.845 9 S 2.805 3.195 10 O -0.992 6.992 11 O -0.984 6.984 12 N -0.846 5.846 13 C -0.047 4.047 14 C 0.132 3.868 15 C -0.566 4.566 16 H 0.085 0.915 17 C -0.181 4.181 18 N -0.565 5.565 19 Si 0.775 3.225 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.211 1.211 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.139 0.861 27 H 0.077 0.923 28 H 0.153 0.847 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.759 -7.378 -3.710 13.563 hybrid contribution -0.334 1.298 -0.044 1.341 sum 10.424 -6.080 -3.754 12.639 Atomic orbital electron populations 1.22733 0.93067 1.03304 1.05276 1.21493 0.94754 0.96293 0.84949 0.90768 1.23019 0.81193 1.00413 0.97374 1.87904 1.22248 1.72249 1.48413 1.23102 1.02291 0.93001 0.84424 1.22363 0.79581 1.02152 1.00855 1.58182 1.19551 1.73568 1.33148 1.01474 0.72767 0.72987 0.72285 1.93482 1.75731 1.59908 1.70035 1.93643 1.43574 1.85097 1.76046 1.57625 1.41795 1.43664 1.41557 1.21426 0.92422 1.03013 0.87807 1.18883 0.84465 0.87407 0.96042 1.21676 0.96346 1.06398 1.32216 0.91459 1.25652 0.94807 1.00397 0.97236 1.70051 1.05196 1.34367 1.46917 0.85634 0.79071 0.79192 0.78606 1.18509 1.20596 1.21097 0.90072 0.91244 0.90819 0.86070 0.92287 0.84685 0.92485 0.89874 0.87599 0.92630 0.90673 0.90800 0.96496 0.95411 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.15 7.41 71.98 0.53 -6.62 16 2 C 0.13 4.36 3.69 44.83 0.17 4.52 16 3 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 4 C 0.06 1.56 6.27 71.94 0.45 2.01 16 5 O -0.39 -10.20 10.74 -148.98 -1.60 -11.80 16 6 C 0.05 1.08 6.99 72.08 0.50 1.58 16 7 C 0.08 1.92 6.73 86.35 0.58 2.50 16 8 N -1.00 -33.09 3.40 -490.13 -1.67 -34.76 16 9 S 2.79 109.15 5.73 -56.49 -0.32 108.82 16 10 O -1.01 -39.51 15.67 -128.00 -2.01 -41.51 16 11 O -1.00 -44.68 12.08 -128.00 -1.55 -46.23 16 12 N -1.01 -41.05 3.23 -543.22 -1.75 -42.80 16 13 C 0.10 3.29 10.31 127.77 1.32 4.61 16 14 C 0.26 12.53 4.70 85.63 0.40 12.93 16 15 C -0.53 -26.32 7.86 25.60 0.20 -26.12 16 16 H 0.07 3.25 7.81 -2.91 -0.02 3.23 16 17 C 0.02 0.98 5.46 84.65 0.46 1.44 16 18 N -0.93 -51.84 13.29 21.44 0.28 -51.55 16 19 Si 0.95 40.98 29.54 68.60 2.03 43.00 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H 0.08 3.72 2.25 -2.38 -0.01 3.71 16 24 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.07 2.83 6.58 -2.39 -0.02 2.81 16 26 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 27 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 28 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.11 2.53 6.80 -2.39 -0.02 2.51 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 2.12 7.79 -2.39 -0.02 2.10 16 34 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 35 H 0.02 0.89 8.11 -2.38 -0.02 0.87 16 36 H 0.03 1.52 5.84 -2.39 -0.01 1.50 16 37 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -63.44 301.07 -0.90 -64.35 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 1.06 Total: 15.62 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 4.62 Total: -3.14 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -3.14 Total: -129.11 kcal Atomic # 8 Polarization: -94.39 SS G_CDS: -5.15 Total: -99.54 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Atomic # 16 Polarization: 109.15 SS G_CDS: -0.32 Total: 108.82 kcal Total: -63.44 -0.90 -64.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046802868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.217 kcal (2) G-P(sol) polarization free energy of solvation -63.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds