Wall clock time and date at job start Tue Mar 31 2020 00:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.67628 * 2 1 4 4 C 1.53295 * 109.68657 * 120.55713 * 2 1 3 5 5 O 1.42956 * 109.22584 * 172.02743 * 4 2 1 6 6 C 1.42964 * 114.16785 * 297.42097 * 5 4 2 7 7 C 1.52879 * 109.29743 * 62.44629 * 6 5 4 8 8 N 1.47152 * 108.60868 * 307.93696 * 7 6 5 9 9 S 1.65598 * 120.97974 * 230.49731 * 8 7 6 10 10 O 1.42099 * 106.39801 * 147.20027 * 9 8 7 11 11 O 1.42099 * 106.39910 * 14.28142 * 9 8 7 12 12 N 1.65597 * 107.21801 * 260.73777 * 9 8 7 13 13 C 1.46497 * 120.00008 * 78.75978 * 12 9 8 14 14 C 1.46496 * 120.00227 * 258.75504 * 12 9 8 15 15 C 1.50703 * 109.47423 * 246.64269 * 14 12 9 16 16 H 1.08004 * 119.99746 * 359.97438 * 15 14 12 17 17 C 1.37878 * 120.00278 * 180.02562 * 15 14 12 18 18 N 1.31511 * 120.00188 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99761 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47351 * 90.00406 * 19 17 15 21 21 H 1.48501 * 109.47291 * 210.00012 * 19 17 15 22 22 H 1.48499 * 109.47187 * 330.00183 * 19 17 15 23 23 H 1.09004 * 109.46649 * 183.14639 * 1 2 3 24 24 H 1.09000 * 109.47514 * 303.14329 * 1 2 3 25 25 H 1.08997 * 109.47579 * 63.15325 * 1 2 3 26 26 H 1.09003 * 109.50944 * 291.95516 * 4 2 1 27 27 H 1.09002 * 109.51140 * 52.05281 * 4 2 1 28 28 H 1.08999 * 109.50949 * 182.50442 * 6 5 4 29 29 H 1.09003 * 109.51205 * 302.60540 * 6 5 4 30 30 H 1.08997 * 109.61461 * 188.11463 * 7 6 5 31 31 H 1.09006 * 109.52088 * 67.70263 * 7 6 5 32 32 H 1.08998 * 109.47335 * 89.99626 * 13 12 9 33 33 H 1.09001 * 109.46881 * 329.99636 * 13 12 9 34 34 H 1.08993 * 109.47451 * 209.99669 * 13 12 9 35 35 H 1.09002 * 109.47058 * 6.64063 * 14 12 9 36 36 H 1.09000 * 109.47406 * 126.63936 * 14 12 9 37 37 H 0.96993 * 120.00415 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0464 -0.7338 1.2429 5 8 3.4636 -0.8914 1.1416 6 6 3.8861 -1.6894 0.0332 7 6 3.4630 -1.0095 -1.2691 8 7 2.0256 -0.7035 -1.1937 9 16 0.9952 -1.1439 -2.4129 10 8 -0.2520 -1.4366 -1.7980 11 8 1.7024 -2.0766 -3.2186 12 7 0.7492 0.1958 -3.3547 13 6 1.7631 0.6007 -4.3315 14 6 -0.4824 0.9760 -3.2111 15 6 -1.3036 0.8545 -4.4689 16 1 -0.9438 0.2563 -5.2930 17 6 -2.5137 1.5079 -4.5681 18 7 -3.2300 1.4023 -5.6659 19 14 -3.1356 2.5432 -3.1429 20 1 -2.6516 3.9387 -3.2966 21 1 -4.6205 2.5325 -3.1343 22 1 -2.6291 1.9815 -1.8650 23 1 -0.3633 -1.0262 0.0564 24 1 -0.3634 0.5618 0.8604 25 1 -0.3634 0.4641 -0.9169 26 1 1.8073 -0.1532 2.1340 27 1 1.5742 -1.7140 1.3094 28 1 4.9706 -1.7963 0.0539 29 1 3.4219 -2.6737 0.0953 30 1 3.6525 -1.6778 -2.1091 31 1 4.0285 -0.0867 -1.3987 32 1 1.5610 0.1165 -5.2869 33 1 2.7496 0.3041 -3.9753 34 1 1.7330 1.6827 -4.4591 35 1 -1.0558 0.5974 -2.3649 36 1 -0.2315 2.0230 -3.0407 37 1 -4.0815 1.8617 -5.7355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046802871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:14 Heat of formation + Delta-G solvation = -93.757756 kcal Electronic energy + Delta-G solvation = -21755.935346 eV Core-core repulsion = 18468.436309 eV Total energy + Delta-G solvation = -3287.499037 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.46796 -37.15066 -35.76128 -35.43109 -35.07314 -32.54930 -32.43033 -28.51875 -27.90746 -26.33955 -25.30466 -23.08665 -21.88042 -21.37593 -18.49800 -17.44332 -17.26548 -16.67512 -16.52272 -16.00082 -15.42522 -15.04071 -14.98311 -14.41708 -14.23527 -13.77136 -13.15056 -12.92580 -12.80360 -12.58487 -12.45564 -12.23878 -11.89407 -11.70848 -11.54320 -11.48465 -11.36760 -11.25531 -10.82231 -10.68695 -10.58580 -10.43227 -10.10706 -9.90551 -9.58291 -8.85607 -8.65422 -8.15398 -6.14392 -4.14593 0.96126 3.19724 3.22926 3.31695 3.32156 3.68657 3.88303 4.33611 4.56243 4.67636 4.72238 4.96665 5.04472 5.11733 5.15532 5.22873 5.37106 5.43011 5.47422 5.57361 5.68074 5.77714 6.00247 6.02298 6.09923 6.22468 6.43175 6.55671 6.62015 6.74788 6.96014 7.05864 7.31400 7.55315 8.43425 8.90457 9.44489 10.98697 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.006752 C = 0.005963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.006097 B = 4146.218000 C = 4694.666683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.122 3.878 3 H 0.080 0.920 4 C 0.055 3.945 5 O -0.381 6.381 6 C 0.051 3.949 7 C 0.082 3.918 8 N -1.012 6.012 9 S 2.780 3.220 10 O -0.966 6.966 11 O -0.989 6.989 12 N -0.990 5.990 13 C 0.112 3.888 14 C 0.215 3.785 15 C -0.534 4.534 16 H 0.080 0.920 17 C 0.073 3.927 18 N -0.894 5.894 19 Si 0.871 3.129 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.261 1.261 23 H 0.100 0.900 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.021 0.979 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.279 -1.862 12.571 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.016 3.984 3 H 0.098 0.902 4 C -0.023 4.023 5 O -0.299 6.299 6 C -0.027 4.027 7 C -0.044 4.044 8 N -0.852 5.852 9 S 2.791 3.209 10 O -0.950 6.950 11 O -0.973 6.973 12 N -0.832 5.832 13 C -0.034 4.034 14 C 0.092 3.908 15 C -0.574 4.574 16 H 0.098 0.902 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.697 3.303 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.186 1.186 23 H 0.119 0.881 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.122 0.878 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.855 -2.579 12.452 18.082 hybrid contribution -0.471 0.974 0.331 1.132 sum 12.384 -1.605 12.783 17.870 Atomic orbital electron populations 1.22904 0.91899 1.06285 1.04165 1.21627 0.95536 0.96255 0.84975 0.90230 1.23027 0.81330 1.00364 0.97579 1.87917 1.22203 1.72143 1.47667 1.22836 1.00495 0.93662 0.85742 1.22023 0.81127 1.01449 0.99808 1.58637 1.18857 1.73993 1.33725 1.02093 0.72846 0.73549 0.72395 1.93651 1.42185 1.83721 1.75474 1.93523 1.75243 1.60429 1.68078 1.57388 1.27582 1.48348 1.49850 1.21163 0.88056 1.01524 0.92680 1.19703 0.81118 0.90828 0.99188 1.21317 1.03643 1.31703 1.00697 0.90240 1.24883 0.96254 0.96122 0.95707 1.69885 1.13553 1.43180 1.26578 0.86927 0.78770 0.80990 0.83592 1.20000 1.20779 1.18587 0.88124 0.91336 0.90110 0.87867 0.92415 0.87790 0.92690 0.87890 0.90827 0.92598 0.93428 0.91166 0.92748 0.96102 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.88 7.56 37.16 0.28 -2.60 16 2 C 0.12 1.60 3.71 -67.42 -0.25 1.35 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.06 0.62 6.29 37.31 0.23 0.85 16 5 O -0.38 -4.53 10.74 -35.23 -0.38 -4.90 16 6 C 0.05 0.53 6.97 37.10 0.26 0.79 16 7 C 0.08 0.96 6.70 -3.75 -0.03 0.93 16 8 N -1.01 -14.71 3.40 -106.26 -0.36 -15.07 16 9 S 2.78 52.72 5.59 -107.50 -0.60 52.11 16 10 O -0.97 -20.56 12.04 -57.17 -0.69 -21.24 16 11 O -0.99 -20.25 16.04 -57.17 -0.92 -21.17 16 12 N -0.99 -19.94 3.32 -123.06 -0.41 -20.35 16 13 C 0.11 1.93 10.04 59.85 0.60 2.53 16 14 C 0.21 4.99 3.86 -5.19 -0.02 4.97 16 15 C -0.53 -14.96 9.59 -34.44 -0.33 -15.29 16 16 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 17 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 18 N -0.89 -27.05 13.96 55.43 0.77 -26.28 16 19 Si 0.87 20.75 27.47 -169.99 -4.67 16.08 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 23 H 0.10 1.61 6.30 -51.93 -0.33 1.29 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 1.43 3.68 -51.93 -0.19 1.24 16 26 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.10 1.21 6.79 -51.93 -0.35 0.85 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.66 8.04 -51.93 -0.42 0.24 16 34 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 35 H 0.06 1.29 3.88 -51.93 -0.20 1.09 16 36 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 299.34 15.07 4.51 4.51 Total: -1.00 -33.40 299.34 -7.36 -40.76 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.27 Total: 0.02 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 0.65 Total: -4.47 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: 0.00 Total: -61.70 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -1.98 Total: -47.32 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Atomic # 16 Polarization: 52.72 SS G_CDS: -0.60 Total: 52.11 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.40 -7.36 -40.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046802871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.997 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds