Wall clock time and date at job start Tue Mar 31 2020 00:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.67628 * 2 1 4 4 C 1.53295 * 109.68657 * 120.55713 * 2 1 3 5 5 O 1.42956 * 109.22584 * 172.02743 * 4 2 1 6 6 C 1.42964 * 114.16785 * 297.42097 * 5 4 2 7 7 C 1.52879 * 109.29743 * 62.44629 * 6 5 4 8 8 N 1.47152 * 108.60868 * 307.93696 * 7 6 5 9 9 S 1.65598 * 120.97974 * 230.49731 * 8 7 6 10 10 O 1.42099 * 106.39801 * 147.20027 * 9 8 7 11 11 O 1.42099 * 106.39910 * 14.28142 * 9 8 7 12 12 N 1.65597 * 107.21801 * 260.73777 * 9 8 7 13 13 C 1.46497 * 120.00008 * 78.75978 * 12 9 8 14 14 C 1.46496 * 120.00227 * 258.75504 * 12 9 8 15 15 C 1.50703 * 109.47423 * 246.64269 * 14 12 9 16 16 H 1.08004 * 119.99746 * 359.97438 * 15 14 12 17 17 C 1.37878 * 120.00278 * 180.02562 * 15 14 12 18 18 N 1.31511 * 120.00188 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99761 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47351 * 90.00406 * 19 17 15 21 21 H 1.48501 * 109.47291 * 210.00012 * 19 17 15 22 22 H 1.48499 * 109.47187 * 330.00183 * 19 17 15 23 23 H 1.09004 * 109.46649 * 183.14639 * 1 2 3 24 24 H 1.09000 * 109.47514 * 303.14329 * 1 2 3 25 25 H 1.08997 * 109.47579 * 63.15325 * 1 2 3 26 26 H 1.09003 * 109.50944 * 291.95516 * 4 2 1 27 27 H 1.09002 * 109.51140 * 52.05281 * 4 2 1 28 28 H 1.08999 * 109.50949 * 182.50442 * 6 5 4 29 29 H 1.09003 * 109.51205 * 302.60540 * 6 5 4 30 30 H 1.08997 * 109.61461 * 188.11463 * 7 6 5 31 31 H 1.09006 * 109.52088 * 67.70263 * 7 6 5 32 32 H 1.08998 * 109.47335 * 89.99626 * 13 12 9 33 33 H 1.09001 * 109.46881 * 329.99636 * 13 12 9 34 34 H 1.08993 * 109.47451 * 209.99669 * 13 12 9 35 35 H 1.09002 * 109.47058 * 6.64063 * 14 12 9 36 36 H 1.09000 * 109.47406 * 126.63936 * 14 12 9 37 37 H 0.96993 * 120.00415 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0464 -0.7338 1.2429 5 8 3.4636 -0.8914 1.1416 6 6 3.8861 -1.6894 0.0332 7 6 3.4630 -1.0095 -1.2691 8 7 2.0256 -0.7035 -1.1937 9 16 0.9952 -1.1439 -2.4129 10 8 -0.2520 -1.4366 -1.7980 11 8 1.7024 -2.0766 -3.2186 12 7 0.7492 0.1958 -3.3547 13 6 1.7631 0.6007 -4.3315 14 6 -0.4824 0.9760 -3.2111 15 6 -1.3036 0.8545 -4.4689 16 1 -0.9438 0.2563 -5.2930 17 6 -2.5137 1.5079 -4.5681 18 7 -3.2300 1.4023 -5.6659 19 14 -3.1356 2.5432 -3.1429 20 1 -2.6516 3.9387 -3.2966 21 1 -4.6205 2.5325 -3.1343 22 1 -2.6291 1.9815 -1.8650 23 1 -0.3633 -1.0262 0.0564 24 1 -0.3634 0.5618 0.8604 25 1 -0.3634 0.4641 -0.9169 26 1 1.8073 -0.1532 2.1340 27 1 1.5742 -1.7140 1.3094 28 1 4.9706 -1.7963 0.0539 29 1 3.4219 -2.6737 0.0953 30 1 3.6525 -1.6778 -2.1091 31 1 4.0285 -0.0867 -1.3987 32 1 1.5610 0.1165 -5.2869 33 1 2.7496 0.3041 -3.9753 34 1 1.7330 1.6827 -4.4591 35 1 -1.0558 0.5974 -2.3649 36 1 -0.2315 2.0230 -3.0407 37 1 -4.0815 1.8617 -5.7355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046802871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:13 Heat of formation + Delta-G solvation = -120.551180 kcal Electronic energy + Delta-G solvation = -21757.097196 eV Core-core repulsion = 18468.436309 eV Total energy + Delta-G solvation = -3288.660887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.39830 -38.67271 -37.39104 -36.96324 -36.15517 -34.53060 -33.53042 -30.31113 -28.98753 -27.38471 -26.86806 -24.08319 -23.71608 -22.41519 -19.89648 -19.26039 -18.63773 -18.26781 -17.72055 -17.06175 -16.69735 -16.36926 -15.95879 -15.86419 -15.57415 -15.24761 -14.66296 -14.48373 -14.28796 -14.07299 -13.89473 -13.42545 -13.28649 -13.22520 -13.04778 -12.80845 -12.66442 -12.47300 -12.35942 -12.16641 -11.96057 -11.79512 -11.67584 -11.40770 -11.08216 -10.79241 -9.94223 -9.75084 -8.32168 -6.38652 -0.48954 1.35187 1.39492 1.49302 1.88880 2.33487 2.44803 2.88355 3.01619 3.26866 3.58154 3.73141 3.97095 4.05899 4.13683 4.19295 4.33719 4.54505 4.58109 4.62568 4.67368 4.68632 4.75859 4.81330 4.89127 4.98151 5.02987 5.11669 5.30885 5.41575 5.45283 5.57599 5.79311 6.13198 6.27610 6.65744 7.25064 8.84766 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027178 B = 0.006752 C = 0.005963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.006097 B = 4146.218000 C = 4694.666683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.120 3.880 3 H 0.098 0.902 4 C 0.057 3.943 5 O -0.387 6.387 6 C 0.050 3.950 7 C 0.074 3.926 8 N -1.004 6.004 9 S 2.789 3.211 10 O -0.995 6.995 11 O -1.012 7.012 12 N -1.000 6.000 13 C 0.105 3.895 14 C 0.224 3.776 15 C -0.546 4.546 16 H 0.032 0.968 17 C 0.010 3.990 18 N -0.946 5.946 19 Si 0.940 3.060 20 H -0.254 1.254 21 H -0.283 1.283 22 H -0.238 1.238 23 H 0.082 0.918 24 H 0.099 0.901 25 H 0.052 0.948 26 H 0.131 0.869 27 H 0.054 0.946 28 H 0.136 0.864 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.032 0.968 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.966 -0.545 15.582 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.015 3.985 3 H 0.115 0.885 4 C -0.021 4.021 5 O -0.305 6.305 6 C -0.028 4.028 7 C -0.051 4.051 8 N -0.847 5.847 9 S 2.801 3.199 10 O -0.979 6.979 11 O -0.996 6.996 12 N -0.841 5.841 13 C -0.040 4.040 14 C 0.099 3.901 15 C -0.585 4.585 16 H 0.050 0.950 17 C -0.188 4.188 18 N -0.586 5.586 19 Si 0.761 3.239 20 H -0.179 1.179 21 H -0.208 1.208 22 H -0.161 1.161 23 H 0.101 0.899 24 H 0.117 0.883 25 H 0.071 0.929 26 H 0.149 0.851 27 H 0.072 0.928 28 H 0.153 0.847 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.575 -1.275 15.449 21.278 hybrid contribution -0.909 0.474 -0.650 1.214 sum 13.666 -0.801 14.799 20.160 Atomic orbital electron populations 1.22840 0.93278 1.05333 1.03990 1.21845 0.94489 0.97327 0.84853 0.88453 1.23105 0.81106 1.00446 0.97462 1.87921 1.22293 1.72281 1.48009 1.23003 1.02343 0.93043 0.84458 1.22342 0.79255 1.02753 1.00740 1.58285 1.19698 1.74014 1.32708 1.01636 0.72646 0.73106 0.72550 1.93626 1.44211 1.84203 1.75887 1.93484 1.75530 1.61283 1.69260 1.57404 1.27276 1.48141 1.51257 1.21338 0.89122 1.02087 0.91502 1.19459 0.81824 0.92353 0.96462 1.21635 1.04671 1.30764 1.01473 0.94970 1.25914 0.96385 0.97664 0.98875 1.70056 1.14295 1.44907 1.29324 0.85829 0.77951 0.79747 0.80332 1.17872 1.20830 1.16105 0.89942 0.88278 0.92897 0.85113 0.92799 0.84661 0.93032 0.88207 0.88620 0.94902 0.89695 0.90087 0.92649 0.93951 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.38 7.56 71.98 0.54 -4.83 16 2 C 0.12 2.78 3.71 44.96 0.17 2.95 16 3 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 4 C 0.06 1.08 6.29 72.08 0.45 1.53 16 5 O -0.39 -7.70 10.74 -148.98 -1.60 -9.30 16 6 C 0.05 0.86 6.97 71.94 0.50 1.36 16 7 C 0.07 1.51 6.70 86.21 0.58 2.09 16 8 N -1.00 -26.95 3.40 -490.11 -1.67 -28.62 16 9 S 2.79 104.72 5.59 -56.49 -0.32 104.41 16 10 O -1.00 -42.64 12.04 -128.00 -1.54 -44.19 16 11 O -1.01 -41.55 16.04 -128.00 -2.05 -43.61 16 12 N -1.00 -40.03 3.32 -543.24 -1.81 -41.84 16 13 C 0.11 3.58 10.04 127.77 1.28 4.86 16 14 C 0.22 10.27 3.86 85.63 0.33 10.60 16 15 C -0.55 -31.48 9.59 25.60 0.25 -31.23 16 16 H 0.03 2.09 8.06 -2.91 -0.02 2.06 16 17 C 0.01 0.57 5.47 84.66 0.46 1.03 16 18 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 19 Si 0.94 42.26 27.47 68.60 1.88 44.14 16 20 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.24 -9.73 6.54 99.48 0.65 -9.07 16 23 H 0.08 2.56 6.30 -2.38 -0.02 2.55 16 24 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.05 1.77 3.68 -2.39 -0.01 1.76 16 26 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 2.12 6.79 -2.39 -0.02 2.11 16 31 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 2.20 8.04 -2.39 -0.02 2.18 16 34 H 0.08 2.54 8.07 -2.39 -0.02 2.52 16 35 H 0.06 2.58 3.88 -2.39 -0.01 2.57 16 36 H 0.04 1.77 7.57 -2.39 -0.02 1.76 16 37 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -75.00 299.34 -1.23 -76.23 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 1.01 Total: 13.29 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 4.56 Total: -11.64 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -3.18 Total: -129.34 kcal Atomic # 8 Polarization: -91.89 SS G_CDS: -5.19 Total: -97.09 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.14 kcal Atomic # 16 Polarization: 104.72 SS G_CDS: -0.32 Total: 104.41 kcal Total: -75.00 -1.23 -76.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046802871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.322 kcal (2) G-P(sol) polarization free energy of solvation -75.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds