Wall clock time and date at job start Tue Mar 31 2020 01:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47034 * 2 1 4 4 C 1.34777 * 120.00175 * 180.02562 * 3 2 1 5 5 O 1.21368 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.49316 * 120.00577 * 180.02562 * 4 3 2 7 7 O 1.21397 * 119.99316 * 359.97438 * 6 4 3 8 8 N 1.34777 * 120.00577 * 180.02562 * 6 4 3 9 9 C 1.39741 * 120.00148 * 175.49542 * 8 6 4 10 10 C 1.38998 * 120.00457 * 35.14622 * 9 8 6 11 11 C 1.37970 * 119.99167 * 180.02562 * 10 9 8 12 12 C 1.38942 * 120.00394 * 359.97438 * 11 10 9 13 13 O 1.35762 * 119.98806 * 179.97438 * 12 11 10 14 14 C 1.34801 * 117.00365 * 5.35234 * 13 12 11 15 15 H 1.07999 * 119.99698 * 354.95831 * 14 13 12 16 16 C 1.38643 * 120.00180 * 174.95867 * 14 13 12 17 17 N 1.31568 * 120.00155 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00176 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47207 * 60.00051 * 18 16 14 20 20 H 1.48497 * 109.47160 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46818 * 300.00087 * 18 16 14 22 22 C 1.38934 * 120.01537 * 0.26197 * 12 11 10 23 23 C 1.37968 * 120.00686 * 359.48079 * 22 12 11 24 24 H 1.08996 * 109.47248 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46883 * 299.99677 * 1 2 3 26 26 H 1.08999 * 109.47671 * 59.99257 * 1 2 3 27 27 H 1.09000 * 109.46973 * 240.00727 * 2 1 3 28 28 H 1.08996 * 109.47691 * 120.00210 * 2 1 3 29 29 H 0.96997 * 120.00172 * 0.02562 * 3 2 1 30 30 H 0.96995 * 119.99454 * 355.49771 * 8 6 4 31 31 H 1.08001 * 120.00368 * 359.97438 * 10 9 8 32 32 H 1.07996 * 119.99816 * 179.97438 * 11 10 9 33 33 H 0.96998 * 120.00062 * 180.02562 * 17 16 14 34 34 H 1.08006 * 119.99533 * 179.72154 * 22 12 11 35 35 H 1.07994 * 120.00404 * 180.23064 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1321 0.7051 -0.0015 6 6 3.8412 3.0353 0.0001 7 8 3.0522 3.9579 0.0005 8 7 5.1662 3.2816 -0.0010 9 6 5.6326 4.5955 -0.0955 10 6 4.9275 5.6287 0.5108 11 6 5.3880 6.9259 0.4169 12 6 6.5565 7.1994 -0.2832 13 8 7.0090 8.4760 -0.3759 14 6 6.3414 9.4144 0.3247 15 1 5.4408 9.1503 0.8591 16 6 6.8108 10.7185 0.3592 17 7 7.9076 11.0403 -0.2922 18 14 5.8859 12.0187 1.3307 19 1 5.8277 11.6205 2.7601 20 1 6.5881 13.3214 1.2075 21 1 4.5065 12.1479 0.7962 22 6 7.2588 6.1675 -0.8935 23 6 6.8018 4.8695 -0.7954 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.3880 2.1185 0.0004 30 1 5.7961 2.5469 0.0638 31 1 4.0190 5.4161 1.0546 32 1 4.8400 7.7287 0.8875 33 1 8.2362 11.9526 -0.2677 34 1 8.1647 6.3811 -1.4414 35 1 7.3497 4.0670 -1.2666 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048618161.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:36 Heat of formation + Delta-G solvation = -66.147141 kcal Electronic energy + Delta-G solvation = -20347.356699 eV Core-core repulsion = 16925.610997 eV Total energy + Delta-G solvation = -3421.745702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86040 -39.32783 -38.41414 -36.63273 -35.79648 -33.98766 -32.22559 -30.98595 -30.26831 -28.34384 -25.67261 -24.89482 -22.94043 -22.25349 -21.29401 -20.18453 -18.85469 -17.95562 -17.25763 -16.96749 -16.27888 -16.07965 -15.56470 -15.07510 -14.55515 -14.34202 -14.16569 -13.67293 -13.65210 -13.52934 -12.98308 -12.92480 -12.61952 -12.27584 -11.93233 -11.85736 -11.77981 -11.60813 -11.38098 -11.03962 -10.78470 -10.47707 -9.79798 -9.65139 -9.52944 -9.22843 -8.75077 -8.26812 -7.02036 -6.48340 -4.05813 1.25060 2.12134 2.17515 2.38587 3.12415 3.13009 3.16537 3.22327 3.61833 3.94949 4.39187 4.52704 4.57404 4.67812 4.93285 5.06008 5.21509 5.35539 5.47806 5.62436 5.62594 5.67553 5.94280 6.03437 6.10172 6.23503 6.61992 6.71474 6.87417 6.94683 7.02810 7.23671 7.37999 7.43337 7.67325 7.71599 7.96375 8.08360 8.97024 9.65361 10.69197 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033744 B = 0.003180 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.589902 B = 8803.999474 C = 9516.612654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.703 5.703 4 C 0.511 3.489 5 O -0.523 6.523 6 C 0.495 3.505 7 O -0.510 6.510 8 N -0.623 5.623 9 C 0.021 3.979 10 C -0.060 4.060 11 C -0.222 4.222 12 C 0.150 3.850 13 O -0.173 6.173 14 C -0.392 4.392 15 H 0.093 0.907 16 C 0.040 3.960 17 N -0.861 5.861 18 Si 0.942 3.058 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.178 4.178 23 C -0.084 4.084 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.414 0.586 30 H 0.414 0.586 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.271 0.729 34 H 0.124 0.876 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.905 -17.837 1.314 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.358 5.358 4 C 0.292 3.708 5 O -0.399 6.399 6 C 0.277 3.723 7 O -0.386 6.386 8 N -0.269 5.269 9 C -0.071 4.071 10 C -0.080 4.080 11 C -0.242 4.242 12 C 0.095 3.905 13 O -0.076 6.076 14 C -0.468 4.468 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.194 1.194 22 C -0.198 4.198 23 C -0.104 4.104 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.251 0.749 30 H 0.250 0.750 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.081 0.919 34 H 0.142 0.858 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.587 -17.551 1.132 20.528 hybrid contribution -0.511 0.570 0.495 0.912 sum -11.099 -16.981 1.627 20.351 Atomic orbital electron populations 1.22024 0.93937 1.03445 1.03027 1.21437 0.94720 0.82054 1.02876 1.45828 1.06706 1.09984 1.73267 1.20181 0.83408 0.89608 0.77639 1.90759 1.55274 1.45782 1.48086 1.20021 0.83717 0.89167 0.79444 1.90776 1.55080 1.45075 1.47640 1.42839 1.06286 1.08436 1.69308 1.17245 0.99227 0.82742 1.07897 1.20841 0.98772 0.91521 0.96843 1.21089 0.99162 0.96721 1.07222 1.19448 0.91863 0.86154 0.92998 1.83966 1.51595 1.11515 1.60489 1.21312 1.08474 0.87767 1.29263 0.88959 1.25304 0.96412 0.97351 0.97395 1.70032 1.20395 1.19977 1.39116 0.85768 0.79070 0.78994 0.79557 1.19430 1.20255 1.19420 1.20003 1.02414 0.90330 1.07026 1.20390 0.95761 0.96109 0.98173 0.90481 0.91655 0.91650 0.90945 0.90939 0.74948 0.74973 0.85660 0.85036 0.91880 0.85828 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.03 37.16 0.37 -0.40 16 2 C 0.11 0.81 6.39 -4.04 -0.03 0.78 16 3 N -0.70 -6.73 5.55 -60.78 -0.34 -7.07 16 4 C 0.51 6.44 7.88 -11.65 -0.09 6.34 16 5 O -0.52 -7.43 16.48 5.48 0.09 -7.34 16 6 C 0.50 7.28 7.73 -11.65 -0.09 7.19 16 7 O -0.51 -8.61 13.91 5.46 0.08 -8.53 16 8 N -0.62 -9.19 5.32 -10.27 -0.05 -9.25 16 9 C 0.02 0.38 6.30 -83.69 -0.53 -0.15 16 10 C -0.06 -1.18 8.69 -39.40 -0.34 -1.52 16 11 C -0.22 -4.90 9.16 -39.42 -0.36 -5.26 16 12 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 13 O -0.17 -4.87 9.75 0.09 0.00 -4.86 16 14 C -0.39 -10.86 9.48 30.88 0.29 -10.57 16 15 H 0.09 2.37 5.19 -52.49 -0.27 2.09 16 16 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 17 N -0.86 -24.98 13.67 55.48 0.76 -24.22 16 18 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 C -0.18 -3.65 9.98 -39.42 -0.39 -4.05 16 23 C -0.08 -1.47 9.96 -39.40 -0.39 -1.86 16 24 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.41 3.55 7.94 -40.82 -0.32 3.23 16 30 H 0.41 5.14 8.30 -40.82 -0.34 4.80 16 31 H 0.13 2.38 6.22 -52.49 -0.33 2.06 16 32 H 0.13 2.90 5.63 -52.49 -0.30 2.61 16 33 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 35 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -32.31 311.72 -5.36 -37.67 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -3.65 Total: 8.75 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.91 Total: -5.19 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.37 Total: -40.54 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.17 Total: -20.74 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.31 -5.36 -37.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048618161.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.478 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds