Wall clock time and date at job start Tue Mar 31 2020 01:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47034 * 2 1 4 4 C 1.34777 * 120.00175 * 180.02562 * 3 2 1 5 5 O 1.21368 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.49316 * 120.00577 * 180.02562 * 4 3 2 7 7 O 1.21397 * 119.99316 * 359.97438 * 6 4 3 8 8 N 1.34777 * 120.00577 * 180.02562 * 6 4 3 9 9 C 1.39741 * 120.00148 * 175.49542 * 8 6 4 10 10 C 1.38998 * 120.00457 * 35.14622 * 9 8 6 11 11 C 1.37970 * 119.99167 * 180.02562 * 10 9 8 12 12 C 1.38942 * 120.00394 * 359.97438 * 11 10 9 13 13 O 1.35762 * 119.98806 * 179.97438 * 12 11 10 14 14 C 1.34801 * 117.00365 * 5.35234 * 13 12 11 15 15 H 1.07999 * 119.99698 * 354.95831 * 14 13 12 16 16 C 1.38643 * 120.00180 * 174.95867 * 14 13 12 17 17 N 1.31568 * 120.00155 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00176 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47207 * 60.00051 * 18 16 14 20 20 H 1.48497 * 109.47160 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46818 * 300.00087 * 18 16 14 22 22 C 1.38934 * 120.01537 * 0.26197 * 12 11 10 23 23 C 1.37968 * 120.00686 * 359.48079 * 22 12 11 24 24 H 1.08996 * 109.47248 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46883 * 299.99677 * 1 2 3 26 26 H 1.08999 * 109.47671 * 59.99257 * 1 2 3 27 27 H 1.09000 * 109.46973 * 240.00727 * 2 1 3 28 28 H 1.08996 * 109.47691 * 120.00210 * 2 1 3 29 29 H 0.96997 * 120.00172 * 0.02562 * 3 2 1 30 30 H 0.96995 * 119.99454 * 355.49771 * 8 6 4 31 31 H 1.08001 * 120.00368 * 359.97438 * 10 9 8 32 32 H 1.07996 * 119.99816 * 179.97438 * 11 10 9 33 33 H 0.96998 * 120.00062 * 180.02562 * 17 16 14 34 34 H 1.08006 * 119.99533 * 179.72154 * 22 12 11 35 35 H 1.07994 * 120.00404 * 180.23064 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1321 0.7051 -0.0015 6 6 3.8412 3.0353 0.0001 7 8 3.0522 3.9579 0.0005 8 7 5.1662 3.2816 -0.0010 9 6 5.6326 4.5955 -0.0955 10 6 4.9275 5.6287 0.5108 11 6 5.3880 6.9259 0.4169 12 6 6.5565 7.1994 -0.2832 13 8 7.0090 8.4760 -0.3759 14 6 6.3414 9.4144 0.3247 15 1 5.4408 9.1503 0.8591 16 6 6.8108 10.7185 0.3592 17 7 7.9076 11.0403 -0.2922 18 14 5.8859 12.0187 1.3307 19 1 5.8277 11.6205 2.7601 20 1 6.5881 13.3214 1.2075 21 1 4.5065 12.1479 0.7962 22 6 7.2588 6.1675 -0.8935 23 6 6.8018 4.8695 -0.7954 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.3880 2.1185 0.0004 30 1 5.7961 2.5469 0.0638 31 1 4.0190 5.4161 1.0546 32 1 4.8400 7.7287 0.8875 33 1 8.2362 11.9526 -0.2677 34 1 8.1647 6.3811 -1.4414 35 1 7.3497 4.0670 -1.2666 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048618161.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:35 Heat of formation + Delta-G solvation = -90.418075 kcal Electronic energy + Delta-G solvation = -20348.409166 eV Core-core repulsion = 16925.610997 eV Total energy + Delta-G solvation = -3422.798169 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.06510 -40.79709 -39.81987 -38.21455 -36.68463 -35.39096 -34.17416 -31.93126 -31.62582 -29.89548 -27.44870 -26.14698 -24.09066 -23.56714 -22.64199 -21.39504 -20.24013 -19.61203 -18.84355 -18.32505 -17.46327 -17.18525 -16.64230 -16.31715 -16.19282 -15.67570 -15.51701 -15.39496 -15.09396 -14.69796 -14.59889 -14.17796 -13.58190 -13.45322 -13.32631 -13.26767 -12.80959 -12.70931 -12.63683 -12.43670 -12.42618 -12.14695 -11.46847 -11.12992 -10.73795 -10.58061 -10.32903 -9.87847 -8.70400 -8.47279 -6.14236 0.05382 0.50960 0.69283 1.26066 1.36366 1.46549 1.52113 2.06060 2.18292 2.59161 2.79361 3.13004 3.35076 3.48846 4.05778 4.06800 4.08533 4.20600 4.45097 4.50053 4.57739 4.64506 4.84703 5.03526 5.04564 5.07261 5.19726 5.26013 5.27611 5.35283 5.49517 5.66436 5.86814 6.01198 6.09756 6.30760 6.69588 6.88055 6.97320 7.75233 8.75058 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033744 B = 0.003180 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.589902 B = 8803.999474 C = 9516.612654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.108 3.892 3 N -0.689 5.689 4 C 0.517 3.483 5 O -0.539 6.539 6 C 0.498 3.502 7 O -0.531 6.531 8 N -0.619 5.619 9 C 0.048 3.952 10 C -0.068 4.068 11 C -0.228 4.228 12 C 0.113 3.887 13 O -0.224 6.224 14 C -0.415 4.415 15 H 0.101 0.899 16 C -0.020 4.020 17 N -0.917 5.917 18 Si 1.017 2.983 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.259 1.259 22 C -0.180 4.180 23 C -0.071 4.071 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.420 0.580 30 H 0.429 0.571 31 H 0.134 0.866 32 H 0.123 0.877 33 H 0.274 0.726 34 H 0.131 0.869 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.657 -20.437 1.733 24.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.014 4.014 3 N -0.343 5.343 4 C 0.297 3.703 5 O -0.417 6.417 6 C 0.281 3.719 7 O -0.407 6.407 8 N -0.266 5.266 9 C -0.045 4.045 10 C -0.088 4.088 11 C -0.248 4.248 12 C 0.062 3.938 13 O -0.130 6.130 14 C -0.491 4.491 15 H 0.118 0.882 16 C -0.218 4.218 17 N -0.555 5.555 18 Si 0.836 3.164 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.183 1.183 22 C -0.200 4.200 23 C -0.090 4.090 24 H 0.112 0.888 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.257 0.743 30 H 0.268 0.732 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.083 0.917 34 H 0.148 0.852 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.387 -20.242 1.554 23.782 hybrid contribution -0.098 0.943 0.327 1.003 sum -12.485 -19.299 1.880 23.062 Atomic orbital electron populations 1.22006 0.91786 1.04653 1.03323 1.21669 0.96444 0.80399 1.02938 1.45927 1.05655 1.11433 1.71264 1.19709 0.84320 0.88060 0.78239 1.90766 1.55839 1.45608 1.49492 1.20480 0.83286 0.90108 0.78067 1.90777 1.55626 1.46112 1.48205 1.42787 1.06952 1.07476 1.69399 1.17377 0.98282 0.83769 1.05121 1.20947 0.99390 0.91066 0.97403 1.21110 0.98781 0.97691 1.07171 1.19974 0.93219 0.85846 0.94806 1.83936 1.53281 1.13083 1.62702 1.21772 1.09075 0.88509 1.29783 0.88194 1.26550 0.97367 0.99443 0.98405 1.70168 1.22785 1.20654 1.41876 0.84678 0.77840 0.75715 0.78199 1.18200 1.19508 1.18294 1.20308 1.02455 0.90860 1.06349 1.20780 0.95442 0.95895 0.96924 0.88820 0.91317 0.91385 0.90899 0.90823 0.74279 0.73160 0.84874 0.85957 0.91738 0.85152 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 10.03 71.98 0.72 -0.29 16 2 C 0.11 1.25 6.39 86.38 0.55 1.81 16 3 N -0.69 -11.35 5.55 -464.55 -2.58 -13.93 16 4 C 0.52 11.63 7.88 87.23 0.69 12.32 16 5 O -0.54 -13.83 16.48 -3.30 -0.05 -13.88 16 6 C 0.50 13.34 7.73 87.23 0.67 14.02 16 7 O -0.53 -16.78 13.91 -3.39 -0.05 -16.83 16 8 N -0.62 -16.32 5.32 -304.74 -1.62 -17.94 16 9 C 0.05 1.58 6.30 38.24 0.24 1.82 16 10 C -0.07 -2.62 8.69 22.39 0.19 -2.42 16 11 C -0.23 -10.25 9.16 22.37 0.20 -10.04 16 12 C 0.11 5.55 6.65 22.61 0.15 5.70 16 13 O -0.22 -13.30 9.75 -22.58 -0.22 -13.52 16 14 C -0.42 -24.12 9.48 67.92 0.64 -23.48 16 15 H 0.10 5.36 5.19 -2.91 -0.02 5.35 16 16 C -0.02 -1.11 5.49 84.83 0.47 -0.64 16 17 N -0.92 -55.80 13.67 21.61 0.30 -55.50 16 18 Si 1.02 42.78 29.55 68.60 2.03 44.80 16 19 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 C -0.18 -7.32 9.98 22.37 0.22 -7.09 16 23 C -0.07 -2.27 9.96 22.39 0.22 -2.05 16 24 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 25 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 26 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.42 6.11 7.94 -92.71 -0.74 5.37 16 30 H 0.43 9.06 8.30 -92.71 -0.77 8.29 16 31 H 0.13 4.91 6.22 -2.91 -0.02 4.89 16 32 H 0.12 5.61 5.63 -2.91 -0.02 5.60 16 33 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 35 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -73.23 311.72 2.44 -70.80 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -0.35 Total: 26.36 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 4.98 Total: -10.35 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -3.90 Total: -87.37 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -0.32 Total: -44.23 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.23 2.44 -70.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048618161.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.621 kcal (2) G-P(sol) polarization free energy of solvation -73.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds