Wall clock time and date at job start Tue Mar 31 2020 01:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.46815 * 2 1 4 4 C 1.36775 * 120.00161 * 264.11884 * 3 2 1 5 5 H 1.07998 * 120.00184 * 140.73084 * 4 3 2 6 6 C 1.39116 * 119.99997 * 320.73903 * 4 3 2 7 7 N 1.31318 * 120.00251 * 163.53024 * 6 4 3 8 8 Si 1.86796 * 119.99962 * 343.52990 * 6 4 3 9 9 H 1.48502 * 109.47438 * 89.61541 * 8 6 4 10 10 H 1.48502 * 109.47240 * 209.62183 * 8 6 4 11 11 H 1.48509 * 109.47003 * 329.61739 * 8 6 4 12 12 C 1.34779 * 120.00165 * 84.12367 * 3 2 1 13 13 O 1.21551 * 120.00239 * 182.77550 * 12 3 2 14 14 C 1.48068 * 119.99837 * 2.77177 * 12 3 2 15 15 C 1.39738 * 119.65921 * 173.48573 * 14 12 3 16 16 C 1.38499 * 119.24496 * 180.02562 * 15 14 12 17 17 C 1.38622 * 118.56733 * 359.74829 * 16 15 14 18 18 C 1.39611 * 119.25737 * 0.49830 * 17 16 15 19 19 C 1.48126 * 119.64979 * 179.76991 * 18 17 16 20 20 O 1.21425 * 119.99988 * 359.72213 * 19 18 17 21 21 O 1.34671 * 120.00022 * 179.44838 * 19 18 17 22 22 C 1.45203 * 117.00337 * 180.27575 * 21 19 18 23 23 N 1.32404 * 119.65798 * 353.50907 * 14 12 3 24 24 H 1.09003 * 109.46964 * 299.99431 * 1 2 3 25 25 H 1.08995 * 109.47301 * 59.99877 * 1 2 3 26 26 H 1.09003 * 109.46948 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46723 * 240.00659 * 2 1 3 28 28 H 1.08995 * 109.47301 * 120.00123 * 2 1 3 29 29 H 0.97000 * 120.00490 * 179.97438 * 7 6 4 30 30 H 1.08000 * 120.37713 * 0.02562 * 15 14 12 31 31 H 1.08001 * 120.71439 * 180.02562 * 16 15 14 32 32 H 1.07994 * 120.37478 * 180.26509 * 17 16 15 33 33 H 1.08992 * 109.47261 * 179.97438 * 22 21 19 34 34 H 1.08994 * 109.46675 * 300.00297 * 22 21 19 35 35 H 1.09004 * 109.46582 * 59.99623 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3607 1.9856 -1.1783 5 1 2.1147 3.0240 -1.3440 6 6 3.0257 1.2626 -2.1633 7 7 3.0707 1.7177 -3.3943 8 14 3.8547 -0.3556 -1.7350 9 1 2.8874 -1.4688 -1.9091 10 1 5.0198 -0.5674 -2.6311 11 1 4.3162 -0.3170 -0.3239 12 6 2.1303 2.0565 1.1611 13 8 2.4871 3.2184 1.1565 14 6 1.8184 1.3828 2.4422 15 6 2.0665 2.0428 3.6487 16 6 1.7720 1.4044 4.8421 17 6 1.2336 0.1279 4.7958 18 6 1.0155 -0.4761 3.5561 19 6 0.4453 -1.8419 3.4966 20 8 0.1748 -2.4321 4.5227 21 8 0.2217 -2.4269 2.3044 22 6 -0.3446 -3.7638 2.3218 23 7 1.3078 0.1613 2.4329 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.5346 1.2137 -4.0811 30 1 2.4830 3.0392 3.6506 31 1 1.9538 1.8925 5.7882 32 1 0.9890 -0.3950 5.7084 33 1 -0.4740 -4.1170 1.2989 34 1 0.3268 -4.4357 2.8564 35 1 -1.3121 -3.7420 2.8235 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:07 Heat of formation + Delta-G solvation = -41.669198 kcal Electronic energy + Delta-G solvation = -22192.488352 eV Core-core repulsion = 18771.804093 eV Total energy + Delta-G solvation = -3420.684259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.91732 -39.84667 -38.13890 -36.51297 -35.32555 -32.90296 -32.16817 -31.43830 -29.58888 -27.95454 -25.83992 -24.71520 -23.58061 -22.70594 -21.43374 -19.66793 -18.11930 -17.30038 -16.84210 -16.50080 -16.39754 -16.09994 -15.68247 -15.16413 -14.64028 -13.99739 -13.95229 -13.62321 -13.57076 -13.01864 -12.77312 -12.60916 -12.37565 -12.23373 -12.04233 -11.83932 -11.40340 -11.06650 -10.86820 -10.83420 -10.69469 -10.21754 -9.96924 -9.78565 -9.26823 -9.15628 -9.03669 -8.54802 -7.75108 -6.49550 -4.04219 0.47503 1.01539 2.31120 2.52437 3.03636 3.18721 3.25380 3.43674 3.98076 4.08836 4.24296 4.34147 4.73979 4.86255 4.94612 5.00866 5.01842 5.08969 5.17460 5.38966 5.52160 5.58437 5.91046 5.93597 6.06619 6.20568 6.22781 6.36178 6.44991 6.66397 6.79682 7.07150 7.40731 7.49621 7.83894 8.20359 8.43886 8.84422 9.20703 9.69120 10.60547 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017608 B = 0.007536 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.846659 B = 3714.766347 C = 4815.113838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.074 3.926 3 N -0.427 5.427 4 C -0.308 4.308 5 H 0.110 0.890 6 C 0.062 3.938 7 N -0.853 5.853 8 Si 0.888 3.112 9 H -0.268 1.268 10 H -0.288 1.288 11 H -0.263 1.263 12 C 0.491 3.509 13 O -0.566 6.566 14 C 0.105 3.895 15 C -0.092 4.092 16 C -0.089 4.089 17 C -0.108 4.108 18 C 0.074 3.926 19 C 0.529 3.471 20 O -0.506 6.506 21 O -0.329 6.329 22 C 0.033 3.967 23 N -0.408 5.408 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.278 0.722 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 -9.175 13.192 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.048 4.048 3 N -0.144 5.144 4 C -0.436 4.436 5 H 0.128 0.872 6 C -0.146 4.146 7 N -0.489 5.489 8 Si 0.715 3.285 9 H -0.195 1.195 10 H -0.215 1.215 11 H -0.188 1.188 12 C 0.279 3.721 13 O -0.449 6.449 14 C -0.036 4.036 15 C -0.113 4.113 16 C -0.115 4.115 17 C -0.129 4.129 18 C -0.063 4.063 19 C 0.372 3.628 20 O -0.394 6.394 21 O -0.244 6.244 22 C -0.060 4.060 23 N -0.123 5.123 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.088 0.912 30 H 0.172 0.828 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.875 -9.261 12.413 16.236 hybrid contribution 0.479 -0.749 0.868 1.242 sum -4.397 -10.010 13.280 17.202 Atomic orbital electron populations 1.21817 0.95849 1.00775 1.01042 1.22418 0.95426 0.84460 1.02514 1.43772 1.53016 1.12172 1.05457 1.19202 1.35947 0.99339 0.89075 0.87230 1.25449 0.95727 0.98683 0.94728 1.69656 1.39068 1.39566 1.00570 0.86839 0.79143 0.82993 0.79485 1.19507 1.21479 1.18774 1.17652 0.84851 0.87575 0.81978 1.90656 1.52439 1.16158 1.85627 1.22006 0.95698 0.89765 0.96137 1.22425 0.95901 1.01475 0.91543 1.21556 0.96991 0.93973 0.98961 1.22066 0.97299 0.95596 0.97956 1.20118 1.02560 0.93027 0.90594 1.20855 0.74666 0.85475 0.81773 1.90818 1.48955 1.64194 1.35440 1.86734 1.74061 1.31740 1.31837 1.23344 0.98412 0.80200 1.04078 1.68395 1.08136 1.08141 1.27669 0.93244 0.93016 0.92675 0.92080 0.87821 0.91197 0.82818 0.83474 0.83542 0.87728 0.91881 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.62 37.16 0.36 -2.25 16 2 C 0.07 1.62 4.21 -4.04 -0.02 1.60 16 3 N -0.43 -10.70 2.18 -115.82 -0.25 -10.95 16 4 C -0.31 -8.71 9.39 -15.02 -0.14 -8.85 16 5 H 0.11 3.44 7.92 -52.49 -0.42 3.02 16 6 C 0.06 1.70 5.36 -17.45 -0.09 1.61 16 7 N -0.85 -24.27 13.95 55.50 0.77 -23.49 16 8 Si 0.89 20.90 24.93 -169.99 -4.24 16.66 16 9 H -0.27 -5.89 6.49 56.52 0.37 -5.52 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.49 11.85 7.56 -12.23 -0.09 11.75 16 13 O -0.57 -15.18 16.21 5.32 0.09 -15.09 16 14 C 0.11 2.02 6.57 -83.03 -0.55 1.47 16 15 C -0.09 -1.41 9.63 -38.93 -0.38 -1.79 16 16 C -0.09 -1.04 10.16 -39.34 -0.40 -1.44 16 17 C -0.11 -1.35 9.63 -38.93 -0.38 -1.73 16 18 C 0.07 1.14 6.75 -83.05 -0.56 0.58 16 19 C 0.53 7.85 7.95 34.79 0.28 8.12 16 20 O -0.51 -7.73 16.11 -19.21 -0.31 -8.04 16 21 O -0.33 -4.64 10.38 -40.41 -0.42 -5.06 16 22 C 0.03 0.33 10.56 101.05 1.07 1.40 16 23 N -0.41 -7.31 4.16 -6.40 -0.03 -7.34 16 24 H 0.05 0.93 6.89 -51.93 -0.36 0.58 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 1.39 3.21 -51.93 -0.17 1.22 16 28 H 0.10 2.16 5.15 -53.48 -0.28 1.89 16 29 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.15 2.25 7.65 -52.49 -0.40 1.85 16 31 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.15 1.52 7.64 -52.49 -0.40 1.12 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 301.55 15.07 4.54 4.54 Total: -1.00 -32.40 301.55 -4.46 -36.86 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -3.72 Total: 1.43 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -0.90 Total: 10.48 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.50 Total: -41.78 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.64 Total: -28.19 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.24 Total: 16.66 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.40 -4.46 -36.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.811 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds