Wall clock time and date at job start Tue Mar 31 2020 01:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.46815 * 2 1 4 4 C 1.36775 * 120.00161 * 264.11884 * 3 2 1 5 5 H 1.07998 * 120.00184 * 140.73084 * 4 3 2 6 6 C 1.39116 * 119.99997 * 320.73903 * 4 3 2 7 7 N 1.31318 * 120.00251 * 163.53024 * 6 4 3 8 8 Si 1.86796 * 119.99962 * 343.52990 * 6 4 3 9 9 H 1.48502 * 109.47438 * 89.61541 * 8 6 4 10 10 H 1.48502 * 109.47240 * 209.62183 * 8 6 4 11 11 H 1.48509 * 109.47003 * 329.61739 * 8 6 4 12 12 C 1.34779 * 120.00165 * 84.12367 * 3 2 1 13 13 O 1.21551 * 120.00239 * 182.77550 * 12 3 2 14 14 C 1.48068 * 119.99837 * 2.77177 * 12 3 2 15 15 C 1.39738 * 119.65921 * 173.48573 * 14 12 3 16 16 C 1.38499 * 119.24496 * 180.02562 * 15 14 12 17 17 C 1.38622 * 118.56733 * 359.74829 * 16 15 14 18 18 C 1.39611 * 119.25737 * 0.49830 * 17 16 15 19 19 C 1.48126 * 119.64979 * 179.76991 * 18 17 16 20 20 O 1.21425 * 119.99988 * 359.72213 * 19 18 17 21 21 O 1.34671 * 120.00022 * 179.44838 * 19 18 17 22 22 C 1.45203 * 117.00337 * 180.27575 * 21 19 18 23 23 N 1.32404 * 119.65798 * 353.50907 * 14 12 3 24 24 H 1.09003 * 109.46964 * 299.99431 * 1 2 3 25 25 H 1.08995 * 109.47301 * 59.99877 * 1 2 3 26 26 H 1.09003 * 109.46948 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46723 * 240.00659 * 2 1 3 28 28 H 1.08995 * 109.47301 * 120.00123 * 2 1 3 29 29 H 0.97000 * 120.00490 * 179.97438 * 7 6 4 30 30 H 1.08000 * 120.37713 * 0.02562 * 15 14 12 31 31 H 1.08001 * 120.71439 * 180.02562 * 16 15 14 32 32 H 1.07994 * 120.37478 * 180.26509 * 17 16 15 33 33 H 1.08992 * 109.47261 * 179.97438 * 22 21 19 34 34 H 1.08994 * 109.46675 * 300.00297 * 22 21 19 35 35 H 1.09004 * 109.46582 * 59.99623 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3607 1.9856 -1.1783 5 1 2.1147 3.0240 -1.3440 6 6 3.0257 1.2626 -2.1633 7 7 3.0707 1.7177 -3.3943 8 14 3.8547 -0.3556 -1.7350 9 1 2.8874 -1.4688 -1.9091 10 1 5.0198 -0.5674 -2.6311 11 1 4.3162 -0.3170 -0.3239 12 6 2.1303 2.0565 1.1611 13 8 2.4871 3.2184 1.1565 14 6 1.8184 1.3828 2.4422 15 6 2.0665 2.0428 3.6487 16 6 1.7720 1.4044 4.8421 17 6 1.2336 0.1279 4.7958 18 6 1.0155 -0.4761 3.5561 19 6 0.4453 -1.8419 3.4966 20 8 0.1748 -2.4321 4.5227 21 8 0.2217 -2.4269 2.3044 22 6 -0.3446 -3.7638 2.3218 23 7 1.3078 0.1613 2.4329 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.5346 1.2137 -4.0811 30 1 2.4830 3.0392 3.6506 31 1 1.9538 1.8925 5.7882 32 1 0.9890 -0.3950 5.7084 33 1 -0.4740 -4.1170 1.2989 34 1 0.3268 -4.4357 2.8564 35 1 -1.3121 -3.7420 2.8235 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:06 Heat of formation + Delta-G solvation = -63.497252 kcal Electronic energy + Delta-G solvation = -22193.434887 eV Core-core repulsion = 18771.804093 eV Total energy + Delta-G solvation = -3421.630795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.15050 -41.13566 -39.76591 -37.57242 -37.22829 -34.57865 -33.67620 -32.76448 -31.32439 -28.80808 -27.67395 -25.83234 -25.09299 -24.37166 -22.61292 -21.23137 -19.28197 -19.07178 -18.38420 -17.89660 -17.55825 -17.47712 -17.13857 -16.48713 -16.27094 -15.71945 -15.31892 -14.95913 -14.78773 -14.48970 -14.30900 -14.10450 -14.04201 -13.65033 -13.18588 -13.09939 -12.96543 -12.68601 -12.54831 -12.13264 -11.92084 -11.77912 -11.66651 -11.16637 -11.00384 -10.86920 -10.40969 -10.19008 -9.69945 -8.57115 -6.21667 -0.68129 -0.18957 1.15053 1.20237 1.29375 1.40108 1.53990 1.92493 2.13265 2.46593 2.69636 2.90550 3.00162 3.62494 3.80034 3.85824 3.92189 4.18790 4.24304 4.31499 4.39061 4.43220 4.59151 4.75364 4.78096 4.91077 4.94820 5.04804 5.17754 5.20321 5.34044 5.50382 5.52050 5.98444 6.23540 6.49686 6.69269 6.83232 7.19225 7.74271 8.58621 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017608 B = 0.007536 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.846659 B = 3714.766347 C = 4815.113838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.076 3.924 3 N -0.446 5.446 4 C -0.334 4.334 5 H 0.053 0.947 6 C 0.020 3.980 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.237 1.237 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.493 3.507 13 O -0.606 6.606 14 C 0.074 3.926 15 C -0.089 4.089 16 C -0.061 4.061 17 C -0.082 4.082 18 C 0.059 3.941 19 C 0.531 3.469 20 O -0.512 6.512 21 O -0.345 6.345 22 C 0.026 3.974 23 N -0.421 5.421 24 H 0.048 0.952 25 H 0.031 0.969 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.120 0.880 29 H 0.284 0.716 30 H 0.156 0.844 31 H 0.202 0.798 32 H 0.180 0.820 33 H 0.127 0.873 34 H 0.069 0.931 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.276 -11.987 16.876 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.045 4.045 3 N -0.164 5.164 4 C -0.462 4.462 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.537 5.537 8 Si 0.773 3.227 9 H -0.162 1.162 10 H -0.208 1.208 11 H -0.192 1.192 12 C 0.282 3.718 13 O -0.491 6.491 14 C -0.066 4.066 15 C -0.110 4.110 16 C -0.086 4.086 17 C -0.102 4.102 18 C -0.079 4.079 19 C 0.375 3.625 20 O -0.401 6.401 21 O -0.260 6.260 22 C -0.067 4.067 23 N -0.137 5.137 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.105 0.895 27 H 0.069 0.931 28 H 0.137 0.863 29 H 0.094 0.906 30 H 0.173 0.827 31 H 0.219 0.781 32 H 0.198 0.802 33 H 0.145 0.855 34 H 0.088 0.912 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.321 -12.094 16.091 20.820 hybrid contribution 0.489 0.152 0.012 0.512 sum -4.832 -11.942 16.103 20.622 Atomic orbital electron populations 1.21723 0.94205 1.02404 0.99995 1.22581 0.96833 0.82538 1.02593 1.43835 1.54397 1.13441 1.04722 1.18766 1.38233 0.97634 0.91590 0.92882 1.26145 0.95590 1.02525 0.94108 1.69755 1.40588 1.41759 1.01633 0.85870 0.78631 0.79408 0.78783 1.16168 1.20784 1.19166 1.18444 0.82703 0.87019 0.83613 1.90605 1.53468 1.18092 1.86910 1.21245 0.99659 0.91066 0.94615 1.22570 0.95319 1.01618 0.91525 1.22084 0.94018 0.93125 0.99353 1.22551 0.94202 0.95454 0.97974 1.20455 1.03031 0.93444 0.90928 1.20741 0.74521 0.85256 0.81979 1.90815 1.49435 1.64295 1.35579 1.86705 1.74105 1.33575 1.31576 1.23668 0.98698 0.78430 1.05900 1.68034 1.08280 1.07699 1.29659 0.93320 0.94989 0.89533 0.93080 0.86327 0.90628 0.82664 0.78131 0.80228 0.85489 0.91204 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 9.62 71.98 0.69 -4.04 16 2 C 0.08 3.30 4.21 86.38 0.36 3.66 16 3 N -0.45 -23.24 2.18 -638.61 -1.39 -24.64 16 4 C -0.33 -20.25 9.39 84.13 0.79 -19.46 16 5 H 0.05 3.70 7.92 -2.91 -0.02 3.67 16 6 C 0.02 1.16 5.36 84.98 0.46 1.61 16 7 N -0.90 -53.93 13.95 21.69 0.30 -53.63 16 8 Si 0.95 43.67 24.93 68.60 1.71 45.38 16 9 H -0.24 -9.63 6.49 99.48 0.65 -8.98 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 C 0.49 24.60 7.56 86.85 0.66 25.26 16 13 O -0.61 -34.26 16.21 -3.88 -0.06 -34.32 16 14 C 0.07 2.79 6.57 42.03 0.28 3.06 16 15 C -0.09 -2.50 9.63 22.69 0.22 -2.28 16 16 C -0.06 -1.08 10.16 22.42 0.23 -0.85 16 17 C -0.08 -1.59 9.63 22.69 0.22 -1.37 16 18 C 0.06 1.61 6.75 42.02 0.28 1.89 16 19 C 0.53 13.91 7.95 70.45 0.56 14.47 16 20 O -0.51 -13.63 16.11 20.08 0.32 -13.31 16 21 O -0.34 -8.65 10.38 -55.80 -0.58 -9.22 16 22 C 0.03 0.42 10.56 113.37 1.20 1.62 16 23 N -0.42 -14.26 4.16 -174.16 -0.72 -14.99 16 24 H 0.05 1.82 6.89 -2.39 -0.02 1.80 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.05 2.28 3.21 -2.39 -0.01 2.28 16 28 H 0.12 4.79 5.15 -5.45 -0.03 4.77 16 29 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.16 4.29 7.65 -2.91 -0.02 4.26 16 31 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.18 2.47 7.64 -2.91 -0.02 2.45 16 33 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -77.22 301.55 6.57 -70.65 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 1.05 Total: 10.50 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: 5.94 Total: 23.58 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -1.82 Total: -93.26 kcal Atomic # 8 Polarization: -56.54 SS G_CDS: -0.32 Total: -56.85 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.71 Total: 45.38 kcal Total: -77.22 6.57 -70.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.157 kcal (2) G-P(sol) polarization free energy of solvation -77.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds