Wall clock time and date at job start Tue Mar 31 2020 01:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47339 * 2 1 4 4 C 1.37092 * 120.00516 * 268.43054 * 3 2 1 5 5 H 1.08001 * 120.00153 * 143.53328 * 4 3 2 6 6 C 1.38953 * 119.99933 * 323.53741 * 4 3 2 7 7 N 1.31415 * 119.99859 * 338.91581 * 6 4 3 8 8 Si 1.86798 * 120.00130 * 158.92585 * 6 4 3 9 9 H 1.48492 * 109.47393 * 59.99617 * 8 6 4 10 10 H 1.48502 * 109.46925 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46979 * 299.99323 * 8 6 4 12 12 C 1.34775 * 119.99489 * 88.42828 * 3 2 1 13 13 O 1.21295 * 119.99836 * 179.97438 * 12 3 2 14 14 C 1.50697 * 120.00568 * 0.02562 * 12 3 2 15 15 C 1.50690 * 109.47595 * 179.97438 * 14 12 3 16 16 C 1.38261 * 120.00333 * 98.64316 * 15 14 12 17 17 C 1.38213 * 120.00249 * 180.27790 * 16 15 14 18 18 C 1.38251 * 119.99711 * 359.48721 * 17 16 15 19 19 C 1.38209 * 120.00208 * 0.49484 * 18 17 16 20 20 C 1.38219 * 120.00079 * 278.66360 * 15 14 12 21 21 N 1.48013 * 119.99849 * 359.97438 * 20 15 14 22 22 O 1.21798 * 120.00271 * 185.95439 * 21 20 15 23 23 O 1.21807 * 120.00162 * 5.95584 * 21 20 15 24 24 H 1.09000 * 109.47472 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46983 * 299.99541 * 1 2 3 26 26 H 1.09003 * 109.47394 * 59.99481 * 1 2 3 27 27 H 1.09008 * 109.46566 * 240.00167 * 2 1 3 28 28 H 1.08990 * 109.47282 * 120.00740 * 2 1 3 29 29 H 0.96998 * 120.00154 * 180.02562 * 7 6 4 30 30 H 1.09007 * 109.47188 * 59.99391 * 14 12 3 31 31 H 1.09002 * 109.46832 * 300.00311 * 14 12 3 32 32 H 1.08005 * 119.99706 * 0.02562 * 16 15 14 33 33 H 1.07996 * 119.99797 * 179.72379 * 17 16 15 34 34 H 1.08008 * 119.99762 * 180.25262 * 18 17 16 35 35 H 1.08005 * 119.99917 * 179.76917 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2776 2.0167 -1.1867 5 1 2.0632 3.0698 -1.2934 6 6 2.8160 1.3058 -2.2524 7 7 3.4538 0.1777 -2.0343 8 14 2.6336 1.9539 -3.9948 9 1 3.2730 3.2903 -4.0954 10 1 3.2913 1.0184 -4.9422 11 1 1.1919 2.0683 -4.3320 12 6 2.2128 2.0271 1.1668 13 8 2.6176 3.1705 1.1669 14 6 1.9284 1.3284 2.4714 15 6 2.2257 2.2619 3.6164 16 6 1.1979 2.9567 4.2267 17 6 1.4713 3.8172 5.2732 18 6 2.7712 3.9751 5.7166 19 6 3.7986 3.2803 5.1069 20 6 3.5260 2.4238 4.0564 21 7 4.6263 1.6799 3.4032 22 8 5.7547 1.7378 3.8580 23 8 4.4034 1.0098 2.4107 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 3.8300 -0.3184 -2.7781 30 1 2.5571 0.4417 2.5533 31 1 0.8794 1.0343 2.5049 32 1 0.1819 2.8302 3.8830 33 1 0.6690 4.3633 5.7469 34 1 2.9844 4.6445 6.5371 35 1 4.8146 3.4065 5.4509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:22 Heat of formation + Delta-G solvation = -0.082046 kcal Electronic energy + Delta-G solvation = -22193.265529 eV Core-core repulsion = 18774.384624 eV Total energy + Delta-G solvation = -3418.880905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.78179 -39.48583 -38.24416 -36.10018 -34.95019 -32.83403 -31.87382 -31.68673 -29.40985 -28.10929 -25.95244 -24.61296 -22.59825 -22.21282 -21.81228 -19.22873 -18.47620 -18.01912 -17.11839 -16.70386 -16.14249 -15.81780 -15.54886 -14.88705 -14.67828 -14.09715 -13.80000 -13.21467 -13.13762 -12.85258 -12.54853 -12.18935 -12.04742 -11.74173 -11.48090 -11.28585 -11.00416 -10.94252 -10.91940 -10.58013 -10.39467 -10.32035 -10.13006 -9.99710 -9.45317 -9.13191 -8.87452 -8.36833 -7.39199 -6.22991 -3.88331 0.19998 1.05654 1.68695 1.89581 3.23951 3.29946 3.32432 3.40979 3.94871 4.21970 4.45467 4.53815 4.69588 4.94808 5.01765 5.05916 5.12503 5.28061 5.60375 5.64469 5.77939 5.85118 5.89859 6.05393 6.11021 6.21494 6.29380 6.36183 6.43706 6.55501 6.89884 6.94745 7.33764 7.66962 8.15453 8.32008 8.57090 9.24790 9.47696 10.06696 10.80173 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022860 B = 0.005832 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.571302 B = 4799.684723 C = 5170.953693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.431 5.431 4 C -0.310 4.310 5 H 0.089 0.911 6 C 0.038 3.962 7 N -0.862 5.862 8 Si 0.917 3.083 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.480 3.520 13 O -0.587 6.587 14 C -0.123 4.123 15 C 0.024 3.976 16 C -0.117 4.117 17 C -0.070 4.070 18 C -0.132 4.132 19 C -0.057 4.057 20 C -0.030 4.030 21 N 0.030 4.970 22 O -0.188 6.188 23 O -0.125 6.125 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.113 0.887 28 H 0.050 0.950 29 H 0.268 0.732 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.283 1.026 13.495 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.031 4.031 3 N -0.149 5.149 4 C -0.437 4.437 5 H 0.106 0.894 6 C -0.167 4.167 7 N -0.500 5.500 8 Si 0.743 3.257 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.268 3.732 13 O -0.471 6.471 14 C -0.163 4.163 15 C 0.023 3.977 16 C -0.135 4.135 17 C -0.088 4.088 18 C -0.151 4.151 19 C -0.077 4.077 20 C -0.113 4.113 21 N 0.548 4.452 22 O -0.396 6.396 23 O -0.346 6.346 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.130 0.870 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.135 0.865 31 H 0.109 0.891 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.447 1.798 13.697 15.245 hybrid contribution 0.260 -0.018 -1.045 1.077 sum -6.188 1.780 12.652 14.196 Atomic orbital electron populations 1.22196 0.98352 1.00266 1.01332 1.21605 0.91551 0.85639 1.04291 1.43329 1.55720 1.11767 1.04096 1.19324 1.41135 0.95957 0.87323 0.89380 1.25351 0.94371 0.96639 1.00297 1.69927 1.31488 1.16385 1.32154 0.86167 0.78503 0.78872 0.82140 1.19872 1.20951 1.19993 1.19629 0.81861 0.87652 0.84067 1.90524 1.50585 1.19004 1.87032 1.21223 1.03722 0.99079 0.92227 1.19526 0.90330 0.94294 0.93598 1.21103 0.99205 0.96748 0.96481 1.21494 0.97120 0.95412 0.94788 1.21075 0.92038 1.00645 1.01292 1.20976 1.01690 0.92603 0.92386 1.20928 0.87169 1.02939 1.00304 1.43540 1.01771 0.99755 1.00137 1.94456 1.08012 1.69396 1.67784 1.94635 1.88863 1.37757 1.13373 0.93090 0.94258 0.92350 0.86955 0.93109 0.92194 0.86504 0.89050 0.83984 0.84399 0.84096 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 10.21 37.16 0.38 -2.50 16 2 C 0.09 2.03 5.49 -4.04 -0.02 2.01 16 3 N -0.43 -11.04 2.53 -114.81 -0.29 -11.33 16 4 C -0.31 -8.73 8.93 -14.93 -0.13 -8.87 16 5 H 0.09 2.60 7.75 -52.49 -0.41 2.19 16 6 C 0.04 1.03 4.96 -17.46 -0.09 0.94 16 7 N -0.86 -23.78 11.39 55.50 0.63 -23.15 16 8 Si 0.92 20.97 29.60 -169.99 -5.03 15.93 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 12 C 0.48 11.88 6.21 -10.99 -0.07 11.81 16 13 O -0.59 -16.70 15.84 5.54 0.09 -16.61 16 14 C -0.12 -2.32 3.69 -29.04 -0.11 -2.42 16 15 C 0.02 0.42 4.40 -104.62 -0.46 -0.04 16 16 C -0.12 -1.55 9.67 -39.58 -0.38 -1.93 16 17 C -0.07 -0.74 10.05 -39.59 -0.40 -1.13 16 18 C -0.13 -1.41 10.05 -39.59 -0.40 -1.81 16 19 C -0.06 -0.80 9.56 -39.59 -0.38 -1.18 16 20 C -0.03 -0.54 6.77 -79.95 -0.54 -1.08 16 21 N 0.03 0.63 4.45 33.96 0.15 0.78 16 22 O -0.19 -3.86 18.46 -29.46 -0.54 -4.41 16 23 O -0.12 -2.95 14.30 -29.46 -0.42 -3.37 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.63 7.03 -51.93 -0.37 0.26 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.11 2.72 5.44 -51.92 -0.28 2.44 16 28 H 0.05 1.01 6.50 -51.93 -0.34 0.68 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.12 2.25 5.24 -51.92 -0.27 1.97 16 31 H 0.09 1.42 6.85 -51.93 -0.36 1.07 16 32 H 0.14 1.56 8.05 -52.48 -0.42 1.13 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.15 1.82 7.62 -52.48 -0.40 1.42 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -34.39 303.07 -7.11 -41.51 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.67 Total: 2.28 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.60 Total: -6.21 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.49 Total: -33.70 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.88 Total: -24.38 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.39 -7.11 -41.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.426 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds