Wall clock time and date at job start Tue Mar 31 2020 01:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47339 * 2 1 4 4 C 1.37092 * 120.00516 * 268.43054 * 3 2 1 5 5 H 1.08001 * 120.00153 * 143.53328 * 4 3 2 6 6 C 1.38953 * 119.99933 * 323.53741 * 4 3 2 7 7 N 1.31415 * 119.99859 * 338.91581 * 6 4 3 8 8 Si 1.86798 * 120.00130 * 158.92585 * 6 4 3 9 9 H 1.48492 * 109.47393 * 59.99617 * 8 6 4 10 10 H 1.48502 * 109.46925 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46979 * 299.99323 * 8 6 4 12 12 C 1.34775 * 119.99489 * 88.42828 * 3 2 1 13 13 O 1.21295 * 119.99836 * 179.97438 * 12 3 2 14 14 C 1.50697 * 120.00568 * 0.02562 * 12 3 2 15 15 C 1.50690 * 109.47595 * 179.97438 * 14 12 3 16 16 C 1.38261 * 120.00333 * 98.64316 * 15 14 12 17 17 C 1.38213 * 120.00249 * 180.27790 * 16 15 14 18 18 C 1.38251 * 119.99711 * 359.48721 * 17 16 15 19 19 C 1.38209 * 120.00208 * 0.49484 * 18 17 16 20 20 C 1.38219 * 120.00079 * 278.66360 * 15 14 12 21 21 N 1.48013 * 119.99849 * 359.97438 * 20 15 14 22 22 O 1.21798 * 120.00271 * 185.95439 * 21 20 15 23 23 O 1.21807 * 120.00162 * 5.95584 * 21 20 15 24 24 H 1.09000 * 109.47472 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46983 * 299.99541 * 1 2 3 26 26 H 1.09003 * 109.47394 * 59.99481 * 1 2 3 27 27 H 1.09008 * 109.46566 * 240.00167 * 2 1 3 28 28 H 1.08990 * 109.47282 * 120.00740 * 2 1 3 29 29 H 0.96998 * 120.00154 * 180.02562 * 7 6 4 30 30 H 1.09007 * 109.47188 * 59.99391 * 14 12 3 31 31 H 1.09002 * 109.46832 * 300.00311 * 14 12 3 32 32 H 1.08005 * 119.99706 * 0.02562 * 16 15 14 33 33 H 1.07996 * 119.99797 * 179.72379 * 17 16 15 34 34 H 1.08008 * 119.99762 * 180.25262 * 18 17 16 35 35 H 1.08005 * 119.99917 * 179.76917 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2776 2.0167 -1.1867 5 1 2.0632 3.0698 -1.2934 6 6 2.8160 1.3058 -2.2524 7 7 3.4538 0.1777 -2.0343 8 14 2.6336 1.9539 -3.9948 9 1 3.2730 3.2903 -4.0954 10 1 3.2913 1.0184 -4.9422 11 1 1.1919 2.0683 -4.3320 12 6 2.2128 2.0271 1.1668 13 8 2.6176 3.1705 1.1669 14 6 1.9284 1.3284 2.4714 15 6 2.2257 2.2619 3.6164 16 6 1.1979 2.9567 4.2267 17 6 1.4713 3.8172 5.2732 18 6 2.7712 3.9751 5.7166 19 6 3.7986 3.2803 5.1069 20 6 3.5260 2.4238 4.0564 21 7 4.6263 1.6799 3.4032 22 8 5.7547 1.7378 3.8580 23 8 4.4034 1.0098 2.4107 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 3.8300 -0.3184 -2.7781 30 1 2.5571 0.4417 2.5533 31 1 0.8794 1.0343 2.5049 32 1 0.1819 2.8302 3.8830 33 1 0.6690 4.3633 5.7469 34 1 2.9844 4.6445 6.5371 35 1 4.8146 3.4065 5.4509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426978.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:22 Heat of formation + Delta-G solvation = -21.918006 kcal Electronic energy + Delta-G solvation = -22194.212407 eV Core-core repulsion = 18774.384624 eV Total energy + Delta-G solvation = -3419.827783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.26879 -40.87996 -39.83794 -37.68954 -36.87429 -34.31118 -33.64115 -32.83091 -31.14206 -29.52306 -27.43267 -26.43144 -24.00407 -23.62691 -23.13281 -20.93467 -19.93517 -19.48016 -18.79012 -18.54896 -17.75828 -17.07632 -16.97829 -16.63976 -15.97457 -15.58680 -15.46276 -14.68990 -14.49107 -14.31822 -13.93605 -13.68037 -13.55789 -13.20182 -13.12928 -12.84355 -12.64986 -12.56084 -12.42425 -12.23338 -12.21226 -12.11323 -11.85097 -11.61069 -10.87476 -10.52982 -10.49759 -10.01951 -9.40400 -8.28706 -6.02912 -1.16201 0.03883 0.35015 0.55906 1.39099 1.40028 1.51323 2.07924 2.28892 2.40026 3.04600 3.13082 3.40091 3.44439 3.82583 4.02377 4.05974 4.12511 4.23363 4.32579 4.38664 4.54010 4.66798 4.76117 4.86459 4.94142 5.06690 5.10338 5.16782 5.30088 5.35194 5.47130 5.61761 5.65020 6.23673 6.52765 6.56865 7.20563 7.51635 8.10264 8.72920 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022860 B = 0.005832 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.571302 B = 4799.684723 C = 5170.953693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.091 3.909 3 N -0.447 5.447 4 C -0.342 4.342 5 H 0.062 0.938 6 C 0.001 3.999 7 N -0.887 5.887 8 Si 0.982 3.018 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.259 1.259 12 C 0.473 3.527 13 O -0.635 6.635 14 C -0.108 4.108 15 C -0.008 4.008 16 C -0.121 4.121 17 C -0.047 4.047 18 C -0.112 4.112 19 C -0.066 4.066 20 C -0.064 4.064 21 N 0.034 4.966 22 O -0.173 6.173 23 O -0.210 6.210 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.272 0.728 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.166 0.834 33 H 0.191 0.809 34 H 0.191 0.809 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.501 2.285 15.888 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 N -0.165 5.165 4 C -0.470 4.470 5 H 0.080 0.920 6 C -0.202 4.202 7 N -0.524 5.524 8 Si 0.805 3.195 9 H -0.207 1.207 10 H -0.197 1.197 11 H -0.184 1.184 12 C 0.262 3.738 13 O -0.523 6.523 14 C -0.147 4.147 15 C -0.010 4.010 16 C -0.139 4.139 17 C -0.064 4.064 18 C -0.130 4.130 19 C -0.086 4.086 20 C -0.148 4.148 21 N 0.543 4.457 22 O -0.390 6.390 23 O -0.413 6.413 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.143 0.857 32 H 0.184 0.816 33 H 0.208 0.792 34 H 0.208 0.792 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.745 2.948 15.986 18.458 hybrid contribution 0.990 -0.257 -1.528 1.838 sum -7.755 2.691 14.458 16.626 Atomic orbital electron populations 1.22073 0.94786 1.02530 1.01482 1.21692 0.94438 0.83609 1.03466 1.43619 1.56046 1.12916 1.03925 1.19298 1.42882 0.95402 0.89462 0.92036 1.26144 0.93459 0.96793 1.03800 1.70031 1.31703 1.17314 1.33380 0.85193 0.79172 0.77832 0.77280 1.20657 1.19675 1.18386 1.20490 0.80382 0.87157 0.85728 1.90457 1.52460 1.21262 1.88084 1.20990 1.05280 0.98615 0.89851 1.19650 0.91283 0.95884 0.94198 1.21534 0.99219 0.96243 0.96893 1.22152 0.98512 0.93180 0.92595 1.21720 0.91063 0.99154 1.01094 1.21404 1.03661 0.92052 0.91435 1.21339 0.86259 1.04906 1.02303 1.44102 1.02512 0.99371 0.99667 1.94375 1.09350 1.68354 1.66970 1.94637 1.89360 1.41320 1.15998 0.89685 0.92313 0.93929 0.89635 0.92013 0.91811 0.87608 0.85749 0.81605 0.79196 0.79213 0.82258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 10.21 71.98 0.74 -4.45 16 2 C 0.09 4.10 5.49 86.38 0.47 4.57 16 3 N -0.45 -23.98 2.53 -635.55 -1.61 -25.59 16 4 C -0.34 -20.32 8.93 84.04 0.75 -19.57 16 5 H 0.06 3.87 7.75 -2.91 -0.02 3.85 16 6 C 0.00 0.03 4.96 84.93 0.42 0.45 16 7 N -0.89 -50.83 11.39 21.66 0.25 -50.59 16 8 Si 0.98 44.15 29.60 68.60 2.03 46.18 16 9 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 12 C 0.47 24.41 6.21 87.66 0.54 24.95 16 13 O -0.63 -37.94 15.84 -3.08 -0.05 -37.99 16 14 C -0.11 -4.16 3.69 29.10 0.11 -4.05 16 15 C -0.01 -0.28 4.40 -19.87 -0.09 -0.37 16 16 C -0.12 -2.79 9.67 22.27 0.22 -2.57 16 17 C -0.05 -0.71 10.05 22.27 0.22 -0.49 16 18 C -0.11 -1.80 10.05 22.27 0.22 -1.58 16 19 C -0.07 -1.70 9.56 22.27 0.21 -1.49 16 20 C -0.06 -2.31 6.77 36.38 0.25 -2.06 16 21 N 0.03 1.49 4.45 -46.47 -0.21 1.28 16 22 O -0.17 -7.34 18.46 18.89 0.35 -6.99 16 23 O -0.21 -10.74 14.30 18.88 0.27 -10.47 16 24 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.06 1.77 7.03 -2.39 -0.02 1.75 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.09 4.32 5.44 -2.38 -0.01 4.30 16 28 H 0.06 2.56 6.50 -2.39 -0.02 2.55 16 29 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.11 4.32 5.24 -2.38 -0.01 4.31 16 31 H 0.12 3.74 6.85 -2.39 -0.02 3.73 16 32 H 0.17 2.94 8.05 -2.91 -0.02 2.92 16 33 H 0.19 1.03 8.06 -2.91 -0.02 1.00 16 34 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.16 3.58 7.62 -2.91 -0.02 3.56 16 Total: -1.00 -83.47 303.07 6.22 -77.24 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 1.12 Total: 13.58 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 4.07 Total: -6.65 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -1.57 Total: -74.89 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: 0.57 Total: -55.45 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -83.47 6.22 -77.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426978.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.327 kcal (2) G-P(sol) polarization free energy of solvation -83.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds