Wall clock time and date at job start Tue Mar 31 2020 01:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46928 * 2 1 4 4 N 1.46505 * 109.47042 * 240.00382 * 2 1 3 5 5 C 1.34773 * 120.00088 * 84.99959 * 4 2 1 6 6 O 1.21582 * 119.99807 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99985 * 180.02562 * 5 4 2 8 8 C 1.39238 * 120.00033 * 185.14608 * 7 5 4 9 9 C 1.39481 * 119.83718 * 214.19363 * 8 7 5 10 10 C 1.36374 * 120.17231 * 179.71301 * 9 8 7 11 11 C 1.40866 * 119.82635 * 0.58405 * 10 9 8 12 12 C 1.41155 * 120.16547 * 179.67509 * 11 10 9 13 13 H 1.07998 * 120.00157 * 205.37103 * 12 11 10 14 14 C 1.39901 * 119.99913 * 25.36096 * 12 11 10 15 15 N 1.30884 * 119.99494 * 16.82687 * 14 12 11 16 16 Si 1.86796 * 120.00070 * 196.81857 * 14 12 11 17 17 H 1.48504 * 109.47028 * 60.00796 * 16 14 12 18 18 H 1.48500 * 109.46808 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47246 * 300.00572 * 16 14 12 20 20 C 1.40868 * 119.67240 * 359.69096 * 11 10 9 21 21 C 1.36368 * 119.82904 * 0.02562 * 20 11 10 22 22 C 1.50700 * 109.47289 * 120.00109 * 2 1 3 23 23 O 1.20827 * 119.99692 * 120.00176 * 22 2 1 24 24 O 1.34227 * 120.00151 * 300.00195 * 22 2 1 25 25 H 1.08996 * 109.47592 * 60.00019 * 1 2 3 26 26 H 1.08999 * 109.47438 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47383 * 299.99437 * 1 2 3 28 28 H 0.97002 * 119.99503 * 264.99436 * 4 2 1 29 29 H 0.96995 * 119.99847 * 5.13644 * 7 5 4 30 30 H 1.08002 * 119.91177 * 359.97438 * 9 8 7 31 31 H 1.08001 * 120.08704 * 180.25466 * 10 9 8 32 32 H 0.97002 * 119.99557 * 179.97438 * 15 14 12 33 33 H 1.08001 * 120.08334 * 179.97438 * 20 11 10 34 34 H 1.08007 * 119.91594 * 179.97438 * 21 20 11 35 35 H 0.96698 * 117.00475 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8574 1.1614 -2.4118 7 7 2.5957 -0.6536 -3.4578 8 6 2.8307 0.0630 -4.6282 9 6 2.5939 -0.5336 -5.8666 10 6 2.8161 0.1640 -7.0171 11 6 3.2978 1.4862 -6.9529 12 6 3.5368 2.2124 -8.1395 13 1 4.2559 3.0182 -8.1439 14 6 2.8424 1.8882 -9.3099 15 7 1.7576 1.1587 -9.2463 16 14 3.4632 2.4968 -10.9633 17 1 4.8320 1.9724 -11.2015 18 1 2.5562 2.0206 -12.0383 19 1 3.4947 3.9815 -10.9642 20 6 3.5401 2.0800 -5.6987 21 6 3.3076 1.3719 -4.5567 22 6 2.0323 -0.7104 1.2304 23 8 2.7270 -1.6928 1.1195 24 8 1.7081 -0.2519 2.4496 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 2.2490 -1.6317 -1.1527 29 1 2.7551 -1.6101 -3.4344 30 1 2.2296 -1.5492 -5.9142 31 1 2.6284 -0.2979 -7.9752 32 1 1.2759 0.9342 -10.0578 33 1 3.9098 3.0932 -5.6418 34 1 3.4932 1.8256 -3.5943 35 1 2.0535 -0.7411 3.2088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051602028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:14 Heat of formation + Delta-G solvation = -96.892648 kcal Electronic energy + Delta-G solvation = -20666.224650 eV Core-core repulsion = 17243.145722 eV Total energy + Delta-G solvation = -3423.078928 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87989 -39.74979 -37.52931 -36.53871 -35.23935 -34.30460 -33.00841 -30.81147 -29.51090 -28.62901 -25.51382 -24.72868 -22.24145 -21.25800 -20.61905 -20.17655 -18.65212 -18.10765 -17.28076 -17.04319 -16.20427 -15.98972 -15.26537 -15.18341 -14.70613 -14.11320 -13.93619 -13.63539 -13.17304 -12.87007 -12.67238 -12.49392 -12.07782 -11.96140 -11.83353 -11.80742 -11.31404 -11.08495 -11.02736 -10.78456 -10.72913 -10.09802 -9.57942 -9.56577 -9.21079 -9.11971 -8.91112 -7.51428 -6.94440 -6.71255 -4.27110 1.81285 2.30536 2.71455 3.07793 3.09809 3.12401 3.13567 3.17396 3.66877 3.95021 4.52408 4.65731 4.74544 4.86292 4.94352 5.45129 5.56883 5.72399 5.99337 6.09418 6.22049 6.35421 6.45354 6.77997 6.80064 7.06309 7.13170 7.28604 7.36905 7.49102 7.63437 7.87436 7.98119 8.06930 8.30795 8.45326 8.62589 8.91164 8.91301 9.08150 10.20769 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.053615 B = 0.003112 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.114109 B = 8995.986470 C = 9048.208580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.176 3.824 3 H 0.128 0.872 4 N -0.742 5.742 5 C 0.700 3.300 6 O -0.575 6.575 7 N -0.661 5.661 8 C 0.010 3.990 9 C -0.114 4.114 10 C -0.152 4.152 11 C 0.105 3.895 12 C -0.459 4.459 13 H 0.078 0.922 14 C 0.074 3.926 15 N -0.794 5.794 16 Si 0.909 3.091 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.214 4.214 21 C -0.076 4.076 22 C 0.480 3.520 23 O -0.512 6.512 24 O -0.509 6.509 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.402 0.598 29 H 0.393 0.607 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.281 0.719 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 -5.589 15.337 16.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.068 3.932 3 H 0.146 0.854 4 N -0.402 5.402 5 C 0.401 3.599 6 O -0.452 6.452 7 N -0.307 5.307 8 C -0.082 4.082 9 C -0.134 4.134 10 C -0.172 4.172 11 C 0.102 3.898 12 C -0.488 4.488 13 H 0.096 0.904 14 C -0.143 4.143 15 N -0.420 5.420 16 Si 0.734 3.266 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.190 1.190 20 C -0.235 4.235 21 C -0.096 4.096 22 C 0.321 3.679 23 O -0.400 6.400 24 O -0.320 6.320 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.238 0.762 29 H 0.226 0.774 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -1.993 -4.639 14.781 15.619 hybrid contribution 0.542 -1.078 -0.163 1.218 sum -1.450 -5.717 14.618 15.763 Atomic orbital electron populations 1.22168 0.91979 1.03098 1.04520 1.20026 0.95913 0.97610 0.79664 0.85435 1.44892 1.73333 1.14179 1.07815 1.15854 0.78662 0.85300 0.80133 1.90935 1.56081 1.14125 1.84032 1.42059 1.68054 1.10745 1.09813 1.16950 1.13608 0.94616 0.83034 1.20197 1.02892 0.98592 0.91746 1.20880 1.05333 0.94501 0.96515 1.17648 0.88869 0.91248 0.92016 1.19520 1.20438 1.15482 0.93403 0.90433 1.25917 0.93416 0.93761 1.01227 1.69843 1.11925 1.29466 1.30726 0.86355 0.79761 0.80024 0.80494 1.18853 1.20392 1.19025 1.20643 1.11697 0.98908 0.92203 1.20245 0.98375 0.93327 0.97662 1.23579 0.76753 0.82411 0.85166 1.90725 1.35785 1.26313 1.87135 1.84510 1.72095 1.58907 1.16525 0.89814 0.92044 0.90318 0.76232 0.77406 0.89191 0.86080 0.90853 0.88717 0.88047 0.72800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.42 37.15 0.35 -1.21 16 2 C 0.18 1.98 3.09 -69.08 -0.21 1.77 16 3 H 0.13 1.54 7.58 -51.93 -0.39 1.15 16 4 N -0.74 -9.78 4.96 -59.81 -0.30 -10.08 16 5 C 0.70 12.39 8.25 -86.92 -0.72 11.67 16 6 O -0.58 -12.36 13.73 5.29 0.07 -12.29 16 7 N -0.66 -11.85 5.31 -14.10 -0.07 -11.93 16 8 C 0.01 0.23 6.27 -83.57 -0.52 -0.29 16 9 C -0.11 -2.61 9.89 -39.79 -0.39 -3.01 16 10 C -0.15 -3.92 8.63 -39.26 -0.34 -4.26 16 11 C 0.10 2.82 5.57 -106.80 -0.59 2.23 16 12 C -0.46 -12.22 9.04 -37.85 -0.34 -12.57 16 13 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 14 C 0.07 1.87 5.15 -17.33 -0.09 1.78 16 15 N -0.79 -20.54 10.95 55.55 0.61 -19.93 16 16 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 20 C -0.21 -5.48 9.74 -39.26 -0.38 -5.86 16 21 C -0.08 -1.84 8.57 -39.79 -0.34 -2.18 16 22 C 0.48 4.81 7.69 36.01 0.28 5.09 16 23 O -0.51 -6.40 16.60 -18.75 -0.31 -6.71 16 24 O -0.51 -3.56 13.33 -39.25 -0.52 -4.08 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 28 H 0.40 4.63 7.81 -40.82 -0.32 4.31 16 29 H 0.39 5.59 8.83 -40.82 -0.36 5.23 16 30 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.12 3.19 6.18 -52.49 -0.32 2.86 16 32 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 33 H 0.09 2.30 8.06 -52.49 -0.42 1.87 16 34 H 0.10 2.42 6.47 -52.48 -0.34 2.08 16 35 H 0.41 1.09 9.10 45.56 0.41 1.51 16 LS Contribution 309.76 15.07 4.67 4.67 Total: -1.00 -32.38 309.76 -7.18 -39.56 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -2.98 Total: 14.01 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -3.31 Total: -6.84 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.24 Total: -41.94 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.76 Total: -23.08 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.38 -7.18 -39.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051602028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.335 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds