Wall clock time and date at job start Tue Mar 31 2020 01:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46928 * 2 1 4 4 N 1.46505 * 109.47042 * 240.00382 * 2 1 3 5 5 C 1.34773 * 120.00088 * 84.99959 * 4 2 1 6 6 O 1.21582 * 119.99807 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99985 * 180.02562 * 5 4 2 8 8 C 1.39238 * 120.00033 * 185.14608 * 7 5 4 9 9 C 1.39481 * 119.83718 * 214.19363 * 8 7 5 10 10 C 1.36374 * 120.17231 * 179.71301 * 9 8 7 11 11 C 1.40866 * 119.82635 * 0.58405 * 10 9 8 12 12 C 1.41155 * 120.16547 * 179.67509 * 11 10 9 13 13 H 1.07998 * 120.00157 * 205.37103 * 12 11 10 14 14 C 1.39901 * 119.99913 * 25.36096 * 12 11 10 15 15 N 1.30884 * 119.99494 * 16.82687 * 14 12 11 16 16 Si 1.86796 * 120.00070 * 196.81857 * 14 12 11 17 17 H 1.48504 * 109.47028 * 60.00796 * 16 14 12 18 18 H 1.48500 * 109.46808 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47246 * 300.00572 * 16 14 12 20 20 C 1.40868 * 119.67240 * 359.69096 * 11 10 9 21 21 C 1.36368 * 119.82904 * 0.02562 * 20 11 10 22 22 C 1.50700 * 109.47289 * 120.00109 * 2 1 3 23 23 O 1.20827 * 119.99692 * 120.00176 * 22 2 1 24 24 O 1.34227 * 120.00151 * 300.00195 * 22 2 1 25 25 H 1.08996 * 109.47592 * 60.00019 * 1 2 3 26 26 H 1.08999 * 109.47438 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47383 * 299.99437 * 1 2 3 28 28 H 0.97002 * 119.99503 * 264.99436 * 4 2 1 29 29 H 0.96995 * 119.99847 * 5.13644 * 7 5 4 30 30 H 1.08002 * 119.91177 * 359.97438 * 9 8 7 31 31 H 1.08001 * 120.08704 * 180.25466 * 10 9 8 32 32 H 0.97002 * 119.99557 * 179.97438 * 15 14 12 33 33 H 1.08001 * 120.08334 * 179.97438 * 20 11 10 34 34 H 1.08007 * 119.91594 * 179.97438 * 21 20 11 35 35 H 0.96698 * 117.00475 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8574 1.1614 -2.4118 7 7 2.5957 -0.6536 -3.4578 8 6 2.8307 0.0630 -4.6282 9 6 2.5939 -0.5336 -5.8666 10 6 2.8161 0.1640 -7.0171 11 6 3.2978 1.4862 -6.9529 12 6 3.5368 2.2124 -8.1395 13 1 4.2559 3.0182 -8.1439 14 6 2.8424 1.8882 -9.3099 15 7 1.7576 1.1587 -9.2463 16 14 3.4632 2.4968 -10.9633 17 1 4.8320 1.9724 -11.2015 18 1 2.5562 2.0206 -12.0383 19 1 3.4947 3.9815 -10.9642 20 6 3.5401 2.0800 -5.6987 21 6 3.3076 1.3719 -4.5567 22 6 2.0323 -0.7104 1.2304 23 8 2.7270 -1.6928 1.1195 24 8 1.7081 -0.2519 2.4496 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 2.2490 -1.6317 -1.1527 29 1 2.7551 -1.6101 -3.4344 30 1 2.2296 -1.5492 -5.9142 31 1 2.6284 -0.2979 -7.9752 32 1 1.2759 0.9342 -10.0578 33 1 3.9098 3.0932 -5.6418 34 1 3.4932 1.8256 -3.5943 35 1 2.0535 -0.7411 3.2088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051602028.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:13 Heat of formation + Delta-G solvation = -120.090778 kcal Electronic energy + Delta-G solvation = -20667.230596 eV Core-core repulsion = 17243.145722 eV Total energy + Delta-G solvation = -3424.084874 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.87863 -41.04417 -39.25926 -37.32454 -36.54005 -35.88546 -34.77156 -32.05165 -31.39360 -30.37585 -26.88172 -26.03871 -23.71868 -22.88895 -22.06869 -21.56362 -19.90851 -19.21029 -18.94953 -18.44140 -17.29961 -17.11457 -16.95025 -16.37715 -16.11248 -15.69597 -15.40297 -14.88709 -14.51399 -14.44963 -14.00829 -13.89820 -13.64010 -13.31953 -13.18656 -12.86272 -12.74293 -12.70787 -12.60790 -12.45575 -11.81241 -11.64050 -11.42913 -11.25635 -11.03600 -10.70263 -10.34298 -9.44413 -8.81221 -8.57232 -6.24626 0.85979 1.02063 1.16769 1.33490 1.41254 1.51711 1.55107 2.07216 2.21791 2.25284 2.78359 3.27383 3.75594 3.92058 4.00429 4.12611 4.41418 4.51614 4.67615 4.74921 4.94459 5.11747 5.16704 5.19804 5.28187 5.31180 5.46017 5.48565 5.65456 5.77839 6.04756 6.10850 6.20551 6.40070 6.68096 6.86223 6.95785 7.02318 7.07032 7.58606 8.36027 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.053615 B = 0.003112 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.114109 B = 8995.986470 C = 9048.208580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.167 3.833 3 H 0.119 0.881 4 N -0.724 5.724 5 C 0.702 3.298 6 O -0.614 6.614 7 N -0.656 5.656 8 C 0.027 3.973 9 C -0.112 4.112 10 C -0.170 4.170 11 C 0.074 3.926 12 C -0.497 4.497 13 H 0.074 0.926 14 C 0.035 3.965 15 N -0.825 5.825 16 Si 0.984 3.016 17 H -0.259 1.259 18 H -0.267 1.267 19 H -0.262 1.262 20 C -0.231 4.231 21 C -0.086 4.086 22 C 0.495 3.505 23 O -0.538 6.538 24 O -0.498 6.498 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.413 0.587 29 H 0.414 0.586 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.289 0.711 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 -6.703 16.445 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.060 3.940 3 H 0.137 0.863 4 N -0.383 5.383 5 C 0.402 3.598 6 O -0.494 6.494 7 N -0.303 5.303 8 C -0.067 4.067 9 C -0.132 4.132 10 C -0.190 4.190 11 C 0.072 3.928 12 C -0.527 4.527 13 H 0.093 0.907 14 C -0.180 4.180 15 N -0.451 5.451 16 Si 0.805 3.195 17 H -0.184 1.184 18 H -0.191 1.191 19 H -0.187 1.187 20 C -0.251 4.251 21 C -0.107 4.107 22 C 0.337 3.663 23 O -0.428 6.428 24 O -0.311 6.311 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.119 0.881 28 H 0.251 0.749 29 H 0.250 0.750 30 H 0.141 0.859 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -2.329 -5.808 15.980 17.161 hybrid contribution 0.591 -0.774 -0.251 1.006 sum -1.738 -6.582 15.729 17.139 Atomic orbital electron populations 1.22105 0.90605 1.03856 1.04445 1.20183 0.96994 0.97189 0.79622 0.86308 1.44680 1.72079 1.14552 1.07036 1.15924 0.78174 0.84809 0.80872 1.90918 1.57653 1.16029 1.84774 1.41847 1.68174 1.11596 1.08711 1.16971 1.11119 0.94068 0.84536 1.20448 1.01884 0.99898 0.90998 1.20893 1.06485 0.94501 0.97135 1.17968 0.90040 0.92176 0.92651 1.19761 1.21683 1.16507 0.94717 0.90743 1.26751 0.93045 0.93665 1.04539 1.69886 1.12735 1.30334 1.32148 0.85229 0.79293 0.79420 0.75606 1.18359 1.19086 1.18674 1.20773 1.12484 0.99292 0.92591 1.20354 0.98825 0.94333 0.97161 1.23072 0.76041 0.81576 0.85601 1.90730 1.37008 1.27423 1.87603 1.84450 1.71602 1.58817 1.16249 0.92202 0.90840 0.88060 0.74888 0.74972 0.85893 0.87139 0.90055 0.88744 0.87951 0.70183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.42 71.98 0.68 -1.99 16 2 C 0.17 3.47 3.09 44.24 0.14 3.60 16 3 H 0.12 2.74 7.58 -2.39 -0.02 2.73 16 4 N -0.72 -17.79 4.96 -461.42 -2.29 -20.08 16 5 C 0.70 24.02 8.25 179.06 1.48 25.50 16 6 O -0.61 -26.28 13.73 -3.98 -0.05 -26.33 16 7 N -0.66 -22.45 5.31 -316.79 -1.68 -24.13 16 8 C 0.03 1.20 6.27 38.57 0.24 1.44 16 9 C -0.11 -5.07 9.89 22.13 0.22 -4.85 16 10 C -0.17 -8.92 8.63 22.48 0.19 -8.72 16 11 C 0.07 4.13 5.57 -21.28 -0.12 4.01 16 12 C -0.50 -27.37 9.04 23.39 0.21 -27.16 16 13 H 0.07 3.96 7.90 -2.91 -0.02 3.94 16 14 C 0.03 1.77 5.15 85.24 0.44 2.20 16 15 N -0.82 -43.31 10.95 21.82 0.24 -43.07 16 16 Si 0.98 38.43 29.59 68.60 2.03 40.46 16 17 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 18 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 20 C -0.23 -12.22 9.74 22.48 0.22 -12.00 16 21 C -0.09 -4.24 8.57 22.13 0.19 -4.05 16 22 C 0.49 8.67 7.69 71.24 0.55 9.22 16 23 O -0.54 -12.15 16.60 21.96 0.36 -11.79 16 24 O -0.50 -5.35 13.33 -51.39 -0.68 -6.04 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.10 1.32 8.11 -2.39 -0.02 1.30 16 28 H 0.41 8.53 7.81 -92.71 -0.72 7.81 16 29 H 0.41 10.73 8.83 -92.71 -0.82 9.91 16 30 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 31 H 0.11 5.95 6.18 -2.91 -0.02 5.94 16 32 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 33 H 0.09 4.81 8.06 -2.91 -0.02 4.78 16 34 H 0.10 4.95 6.47 -2.91 -0.02 4.93 16 35 H 0.44 0.77 9.10 -74.06 -0.67 0.10 16 Total: -1.00 -71.20 309.76 1.31 -69.89 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -1.05 Total: 33.89 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: 4.43 Total: -12.80 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -3.73 Total: -87.28 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.37 Total: -44.16 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -71.20 1.31 -69.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051602028.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.197 kcal (2) G-P(sol) polarization free energy of solvation -71.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds