Wall clock time and date at job start Tue Mar 31 2020 01:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46558 * 2 1 4 4 N 1.46497 * 109.46750 * 119.99789 * 2 1 3 5 5 C 1.34772 * 120.00124 * 275.00398 * 4 2 1 6 6 O 1.21585 * 120.00160 * 359.97438 * 5 4 2 7 7 N 1.34781 * 120.00021 * 180.02562 * 5 4 2 8 8 C 1.39246 * 119.99955 * 174.85536 * 7 5 4 9 9 C 1.39478 * 119.83263 * 325.31997 * 8 7 5 10 10 C 1.36378 * 120.16847 * 179.76250 * 9 8 7 11 11 C 1.40871 * 119.82360 * 0.51085 * 10 9 8 12 12 C 1.41162 * 120.16159 * 179.71660 * 11 10 9 13 13 H 1.07994 * 119.99798 * 205.36362 * 12 11 10 14 14 C 1.39889 * 119.99645 * 25.36941 * 12 11 10 15 15 N 1.30885 * 120.00507 * 16.82476 * 14 12 11 16 16 Si 1.86805 * 119.99843 * 196.82478 * 14 12 11 17 17 H 1.48494 * 109.47056 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46954 * 120.00162 * 16 14 12 19 19 H 1.48500 * 109.47043 * 239.99797 * 16 14 12 20 20 C 1.40864 * 119.67746 * 359.74639 * 11 10 9 21 21 C 1.36379 * 119.82361 * 359.97438 * 20 11 10 22 22 C 1.50697 * 109.47245 * 239.99904 * 2 1 3 23 23 O 1.20824 * 119.99925 * 239.99883 * 22 2 1 24 24 O 1.34236 * 119.99692 * 60.00287 * 22 2 1 25 25 H 1.08994 * 109.47203 * 300.00413 * 1 2 3 26 26 H 1.09002 * 109.46716 * 60.00403 * 1 2 3 27 27 H 1.09000 * 109.47223 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99935 * 95.00130 * 4 2 1 29 29 H 0.96996 * 119.99976 * 354.84849 * 7 5 4 30 30 H 1.07998 * 119.91743 * 0.02562 * 9 8 7 31 31 H 1.07994 * 120.08717 * 180.25678 * 10 9 8 32 32 H 0.96997 * 120.00421 * 179.97438 * 15 14 12 33 33 H 1.07999 * 120.09069 * 179.97438 * 20 11 10 34 34 H 1.08009 * 119.91518 * 179.97438 * 21 20 11 35 35 H 0.96703 * 116.99618 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3571 6 8 1.8582 1.1616 2.4116 7 7 2.5966 -0.6535 3.4575 8 6 2.8314 0.0632 4.6281 9 6 3.3110 1.3710 4.5565 10 6 3.5388 2.0809 5.6985 11 6 3.2986 1.4862 6.9528 12 6 3.5376 2.2124 8.1394 13 1 3.7560 1.6886 9.0583 14 6 3.4915 3.6104 8.1251 15 7 2.9170 4.2362 7.1294 16 14 4.2501 4.5844 9.5272 17 1 4.8320 3.6482 10.5221 18 1 5.3180 5.4684 8.9948 19 1 3.2027 5.4108 10.1793 20 6 2.8194 0.1631 7.0170 21 6 2.5910 -0.5322 5.8662 22 6 2.0324 -0.7104 -1.2304 23 8 2.7271 -1.6927 -1.1195 24 8 1.7082 -0.2517 -2.4496 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2490 -1.6318 1.1527 29 1 2.7565 -1.6099 3.4341 30 1 3.4984 1.8241 3.5943 31 1 3.9061 3.0948 5.6415 32 1 2.8847 5.2056 7.1197 33 1 2.6335 -0.2995 7.9750 34 1 2.2240 -1.5469 5.9138 35 1 2.0536 -0.7409 -3.2088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051602030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:17 Heat of formation + Delta-G solvation = -96.297021 kcal Electronic energy + Delta-G solvation = -20735.046768 eV Core-core repulsion = 17311.993669 eV Total energy + Delta-G solvation = -3423.053099 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.86381 -39.73074 -37.51956 -36.52328 -35.21837 -34.30225 -32.98470 -30.80339 -29.44548 -28.67518 -25.49890 -24.72194 -22.16721 -21.27054 -20.71302 -20.09785 -18.60909 -18.07747 -17.30677 -17.03780 -16.20172 -15.95603 -15.37341 -14.98933 -14.73451 -14.07959 -13.92922 -13.61482 -13.16335 -12.87076 -12.66432 -12.48584 -12.05953 -11.93649 -11.84074 -11.77160 -11.46605 -11.11827 -10.90197 -10.76670 -10.49194 -9.99593 -9.87980 -9.55110 -9.28311 -9.10395 -8.68891 -7.48829 -6.96229 -6.69526 -4.25507 1.82750 2.31897 2.72449 3.09399 3.10144 3.13941 3.15949 3.17806 3.68347 3.96612 4.53561 4.68174 4.76113 4.87923 4.96465 5.46759 5.58503 5.73887 6.00757 6.10779 6.17986 6.36128 6.42964 6.79791 6.83589 7.07959 7.13571 7.31351 7.35597 7.50434 7.64849 7.86404 8.02055 8.09261 8.29639 8.46650 8.66830 8.92463 8.93352 9.09956 10.23326 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037263 B = 0.003382 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.234709 B = 8278.177097 C = 8672.073388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.128 0.872 4 N -0.742 5.742 5 C 0.699 3.301 6 O -0.572 6.572 7 N -0.663 5.663 8 C 0.012 3.988 9 C -0.085 4.085 10 C -0.154 4.154 11 C 0.105 3.895 12 C -0.460 4.460 13 H 0.078 0.922 14 C 0.074 3.926 15 N -0.790 5.790 16 Si 0.908 3.092 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.275 1.275 20 C -0.214 4.214 21 C -0.105 4.105 22 C 0.480 3.520 23 O -0.512 6.512 24 O -0.509 6.509 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.402 0.598 29 H 0.392 0.608 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.280 0.720 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 -7.691 -13.884 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.068 3.932 3 H 0.146 0.854 4 N -0.402 5.402 5 C 0.400 3.600 6 O -0.448 6.448 7 N -0.308 5.308 8 C -0.080 4.080 9 C -0.106 4.106 10 C -0.174 4.174 11 C 0.102 3.898 12 C -0.489 4.489 13 H 0.096 0.904 14 C -0.144 4.144 15 N -0.415 5.415 16 Si 0.732 3.268 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.235 4.235 21 C -0.126 4.126 22 C 0.321 3.679 23 O -0.400 6.400 24 O -0.320 6.320 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.237 0.763 29 H 0.225 0.775 30 H 0.119 0.881 31 H 0.138 0.862 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -2.705 -6.400 -13.562 15.238 hybrid contribution 0.650 -0.804 -0.035 1.034 sum -2.054 -7.204 -13.597 15.524 Atomic orbital electron populations 1.22168 0.91986 1.03045 1.04540 1.20030 0.95909 0.97650 0.79658 0.85406 1.44890 1.73378 1.14149 1.07811 1.15861 0.78717 0.85316 0.80126 1.90962 1.55866 1.13997 1.83948 1.42053 1.68191 1.10690 1.09882 1.16961 1.13762 0.94399 0.82925 1.20427 0.98929 0.93047 0.98156 1.20980 1.04834 1.00357 0.91194 1.17665 0.87958 0.90888 0.93272 1.19561 1.42270 0.90896 0.96211 0.90398 1.25930 0.92955 0.98552 0.96972 1.69871 1.30936 1.10389 1.30291 0.86279 0.79550 0.79653 0.81317 1.18444 1.19739 1.20049 1.20538 1.10119 0.97157 0.95652 1.20021 1.02586 0.98257 0.91689 1.23579 0.76739 0.82393 0.85167 1.90721 1.35800 1.26335 1.87140 1.84516 1.72087 1.58896 1.16522 0.89805 0.90323 0.92074 0.76276 0.77489 0.88073 0.86232 0.90888 0.88636 0.89233 0.72813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.42 37.16 0.35 -1.24 16 2 C 0.18 2.02 3.09 -69.08 -0.21 1.81 16 3 H 0.13 1.60 7.58 -51.93 -0.39 1.21 16 4 N -0.74 -9.92 4.96 -59.81 -0.30 -10.21 16 5 C 0.70 12.56 8.25 -86.92 -0.72 11.84 16 6 O -0.57 -12.63 13.74 5.29 0.07 -12.56 16 7 N -0.66 -11.88 5.31 -14.10 -0.07 -11.95 16 8 C 0.01 0.27 6.27 -83.57 -0.52 -0.25 16 9 C -0.09 -2.14 8.57 -39.79 -0.34 -2.48 16 10 C -0.15 -4.14 8.63 -39.26 -0.34 -4.48 16 11 C 0.10 2.82 5.57 -106.80 -0.59 2.23 16 12 C -0.46 -12.25 9.04 -37.85 -0.34 -12.60 16 13 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 14 C 0.07 1.88 5.15 -17.34 -0.09 1.79 16 15 N -0.79 -20.94 10.95 55.54 0.61 -20.33 16 16 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 17 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 20 C -0.21 -5.22 9.74 -39.26 -0.38 -5.61 16 21 C -0.11 -2.32 9.89 -39.79 -0.39 -2.71 16 22 C 0.48 4.91 7.69 36.00 0.28 5.19 16 23 O -0.51 -6.48 16.60 -18.75 -0.31 -6.79 16 24 O -0.51 -3.67 13.33 -39.27 -0.52 -4.19 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.40 4.65 7.81 -40.82 -0.32 4.33 16 29 H 0.39 5.51 8.83 -40.82 -0.36 5.15 16 30 H 0.10 2.55 6.48 -52.49 -0.34 2.21 16 31 H 0.12 3.34 6.17 -52.49 -0.32 3.02 16 32 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 33 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 34 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.41 1.16 9.10 45.56 0.41 1.58 16 LS Contribution 309.78 15.07 4.67 4.67 Total: -1.00 -32.79 309.78 -7.18 -39.97 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -2.98 Total: 14.11 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -3.31 Total: -6.51 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.24 Total: -42.49 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.76 Total: -23.54 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.79 -7.18 -39.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051602030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.325 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds