Wall clock time and date at job start Tue Mar 31 2020 01:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46558 * 2 1 4 4 N 1.46497 * 109.46750 * 119.99789 * 2 1 3 5 5 C 1.34772 * 120.00124 * 275.00398 * 4 2 1 6 6 O 1.21585 * 120.00160 * 359.97438 * 5 4 2 7 7 N 1.34781 * 120.00021 * 180.02562 * 5 4 2 8 8 C 1.39246 * 119.99955 * 174.85536 * 7 5 4 9 9 C 1.39478 * 119.83263 * 325.31997 * 8 7 5 10 10 C 1.36378 * 120.16847 * 179.76250 * 9 8 7 11 11 C 1.40871 * 119.82360 * 0.51085 * 10 9 8 12 12 C 1.41162 * 120.16159 * 179.71660 * 11 10 9 13 13 H 1.07994 * 119.99798 * 205.36362 * 12 11 10 14 14 C 1.39889 * 119.99645 * 25.36941 * 12 11 10 15 15 N 1.30885 * 120.00507 * 16.82476 * 14 12 11 16 16 Si 1.86805 * 119.99843 * 196.82478 * 14 12 11 17 17 H 1.48494 * 109.47056 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46954 * 120.00162 * 16 14 12 19 19 H 1.48500 * 109.47043 * 239.99797 * 16 14 12 20 20 C 1.40864 * 119.67746 * 359.74639 * 11 10 9 21 21 C 1.36379 * 119.82361 * 359.97438 * 20 11 10 22 22 C 1.50697 * 109.47245 * 239.99904 * 2 1 3 23 23 O 1.20824 * 119.99925 * 239.99883 * 22 2 1 24 24 O 1.34236 * 119.99692 * 60.00287 * 22 2 1 25 25 H 1.08994 * 109.47203 * 300.00413 * 1 2 3 26 26 H 1.09002 * 109.46716 * 60.00403 * 1 2 3 27 27 H 1.09000 * 109.47223 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99935 * 95.00130 * 4 2 1 29 29 H 0.96996 * 119.99976 * 354.84849 * 7 5 4 30 30 H 1.07998 * 119.91743 * 0.02562 * 9 8 7 31 31 H 1.07994 * 120.08717 * 180.25678 * 10 9 8 32 32 H 0.96997 * 120.00421 * 179.97438 * 15 14 12 33 33 H 1.07999 * 120.09069 * 179.97438 * 20 11 10 34 34 H 1.08009 * 119.91518 * 179.97438 * 21 20 11 35 35 H 0.96703 * 116.99618 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3571 6 8 1.8582 1.1616 2.4116 7 7 2.5966 -0.6535 3.4575 8 6 2.8314 0.0632 4.6281 9 6 3.3110 1.3710 4.5565 10 6 3.5388 2.0809 5.6985 11 6 3.2986 1.4862 6.9528 12 6 3.5376 2.2124 8.1394 13 1 3.7560 1.6886 9.0583 14 6 3.4915 3.6104 8.1251 15 7 2.9170 4.2362 7.1294 16 14 4.2501 4.5844 9.5272 17 1 4.8320 3.6482 10.5221 18 1 5.3180 5.4684 8.9948 19 1 3.2027 5.4108 10.1793 20 6 2.8194 0.1631 7.0170 21 6 2.5910 -0.5322 5.8662 22 6 2.0324 -0.7104 -1.2304 23 8 2.7271 -1.6927 -1.1195 24 8 1.7082 -0.2517 -2.4496 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 2.2490 -1.6318 1.1527 29 1 2.7565 -1.6099 3.4341 30 1 3.4984 1.8241 3.5943 31 1 3.9061 3.0948 5.6415 32 1 2.8847 5.2056 7.1197 33 1 2.6335 -0.2995 7.9750 34 1 2.2240 -1.5469 5.9138 35 1 2.0536 -0.7409 -3.2088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051602030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:16 Heat of formation + Delta-G solvation = -120.161228 kcal Electronic energy + Delta-G solvation = -20736.081598 eV Core-core repulsion = 17311.993669 eV Total energy + Delta-G solvation = -3424.087929 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.88114 -41.04433 -39.25151 -37.32881 -36.53460 -35.90712 -34.75590 -32.05805 -31.35501 -30.40509 -26.88181 -26.04432 -23.58389 -23.06805 -22.04566 -21.53713 -19.87268 -19.21543 -18.96975 -18.47107 -17.27959 -17.15929 -16.91806 -16.31243 -16.13625 -15.72610 -15.39442 -14.87885 -14.51369 -14.46287 -13.97712 -13.92140 -13.62528 -13.35882 -13.29178 -12.79855 -12.72381 -12.65698 -12.60624 -12.30174 -11.73792 -11.71905 -11.64112 -11.29331 -11.07786 -10.52821 -10.33908 -9.42281 -8.82301 -8.57578 -6.23584 0.86325 1.01283 1.17398 1.32460 1.40422 1.51121 1.56214 2.07656 2.21063 2.24678 2.80077 3.27954 3.77234 3.91333 3.99835 4.12037 4.46161 4.48863 4.66604 4.74463 4.99131 5.10846 5.18689 5.19090 5.27479 5.32385 5.45438 5.48076 5.67057 5.77875 6.10565 6.14262 6.15795 6.38440 6.71474 6.85738 6.96233 7.04526 7.07730 7.59980 8.37278 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037263 B = 0.003382 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.234709 B = 8278.177097 C = 8672.073388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.166 3.834 3 H 0.116 0.884 4 N -0.723 5.723 5 C 0.700 3.300 6 O -0.615 6.615 7 N -0.655 5.655 8 C 0.027 3.973 9 C -0.099 4.099 10 C -0.178 4.178 11 C 0.072 3.928 12 C -0.494 4.494 13 H 0.081 0.919 14 C 0.030 3.970 15 N -0.830 5.830 16 Si 0.985 3.015 17 H -0.254 1.254 18 H -0.267 1.267 19 H -0.267 1.267 20 C -0.222 4.222 21 C -0.099 4.099 22 C 0.496 3.504 23 O -0.537 6.537 24 O -0.498 6.498 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.414 0.586 29 H 0.415 0.585 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.286 0.714 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 -9.343 -14.687 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.059 3.941 3 H 0.134 0.866 4 N -0.383 5.383 5 C 0.401 3.599 6 O -0.495 6.495 7 N -0.303 5.303 8 C -0.067 4.067 9 C -0.119 4.119 10 C -0.198 4.198 11 C 0.070 3.930 12 C -0.524 4.524 13 H 0.099 0.901 14 C -0.184 4.184 15 N -0.456 5.456 16 Si 0.805 3.195 17 H -0.177 1.177 18 H -0.192 1.192 19 H -0.192 1.192 20 C -0.242 4.242 21 C -0.120 4.120 22 C 0.338 3.662 23 O -0.427 6.427 24 O -0.311 6.311 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.094 0.906 28 H 0.252 0.748 29 H 0.252 0.748 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.152 0.848 35 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -3.076 -8.126 -14.443 16.855 hybrid contribution 0.697 -0.395 -0.016 0.801 sum -2.379 -8.522 -14.459 16.951 Atomic orbital electron populations 1.22102 0.90529 1.03917 1.04397 1.20176 0.97069 0.97109 0.79720 0.86612 1.44659 1.72119 1.14535 1.06965 1.15962 0.78235 0.84772 0.80965 1.90947 1.57637 1.16147 1.84755 1.41824 1.68166 1.11586 1.08705 1.17001 1.11327 0.93533 0.84852 1.20457 0.99798 0.94548 0.97115 1.20870 1.06691 0.99903 0.92305 1.18002 0.89201 0.92448 0.93358 1.19833 1.44100 0.92060 0.96393 0.90080 1.26840 0.92698 0.99213 0.99695 1.69949 1.32182 1.10974 1.32471 0.85125 0.78619 0.77940 0.77781 1.17729 1.19197 1.19205 1.20819 1.09564 0.96441 0.97350 1.20372 1.01160 0.99947 0.90476 1.23047 0.76044 0.81566 0.85577 1.90725 1.36964 1.27402 1.87599 1.84456 1.71602 1.58817 1.16251 0.92268 0.88132 0.90650 0.74824 0.74826 0.88994 0.88543 0.90342 0.87133 0.84839 0.70166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.42 71.98 0.68 -2.07 16 2 C 0.17 3.59 3.09 44.25 0.14 3.73 16 3 H 0.12 2.85 7.58 -2.39 -0.02 2.83 16 4 N -0.72 -18.17 4.96 -461.42 -2.29 -20.45 16 5 C 0.70 24.56 8.25 179.05 1.48 26.04 16 6 O -0.62 -27.54 13.74 -3.99 -0.05 -27.59 16 7 N -0.65 -22.35 5.31 -316.78 -1.68 -24.03 16 8 C 0.03 1.18 6.27 38.56 0.24 1.42 16 9 C -0.10 -5.10 8.57 22.13 0.19 -4.91 16 10 C -0.18 -10.00 8.63 22.48 0.19 -9.81 16 11 C 0.07 4.01 5.57 -21.27 -0.12 3.89 16 12 C -0.49 -27.08 9.04 23.39 0.21 -26.87 16 13 H 0.08 4.21 7.90 -2.91 -0.02 4.19 16 14 C 0.03 1.55 5.15 85.23 0.44 1.98 16 15 N -0.83 -45.75 10.95 21.82 0.24 -45.51 16 16 Si 0.98 39.20 29.59 68.60 2.03 41.23 16 17 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 18 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 19 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 20 C -0.22 -10.70 9.74 22.48 0.22 -10.49 16 21 C -0.10 -4.19 9.89 22.13 0.22 -3.97 16 22 C 0.50 8.97 7.69 71.23 0.55 9.52 16 23 O -0.54 -12.33 16.60 21.97 0.36 -11.96 16 24 O -0.50 -5.65 13.33 -51.47 -0.69 -6.34 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.10 1.38 8.11 -2.39 -0.02 1.37 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.41 8.59 7.81 -92.70 -0.72 7.87 16 29 H 0.41 10.42 8.83 -92.71 -0.82 9.60 16 30 H 0.09 4.83 6.48 -2.91 -0.02 4.81 16 31 H 0.10 5.76 6.17 -2.91 -0.02 5.74 16 32 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 33 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 34 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.44 0.97 9.10 -74.06 -0.67 0.30 16 Total: -1.00 -73.56 309.78 1.31 -72.25 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -1.05 Total: 33.95 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 4.43 Total: -11.53 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -3.73 Total: -90.00 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -0.38 Total: -45.90 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -73.56 1.31 -72.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051602030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.910 kcal (2) G-P(sol) polarization free energy of solvation -73.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds