Wall clock time and date at job start Tue Mar 31 2020 00:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 H 1.09005 * 109.47393 * 54.99909 * 3 2 1 5 5 C 1.50704 * 109.47076 * 174.99988 * 3 2 1 6 6 H 1.07996 * 119.99661 * 120.00042 * 5 3 2 7 7 C 1.37874 * 119.99606 * 300.00005 * 5 3 2 8 8 N 1.31511 * 120.00354 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99633 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47250 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47324 * 120.00139 * 9 7 5 12 12 H 1.48501 * 109.47471 * 239.99958 * 9 7 5 13 13 N 1.46501 * 109.47349 * 294.99887 * 3 2 1 14 14 C 1.34780 * 119.99572 * 85.00323 * 13 3 2 15 15 O 1.21548 * 120.00492 * 359.97438 * 14 13 3 16 16 C 1.47851 * 119.99404 * 180.02562 * 14 13 3 17 17 C 1.39576 * 120.13897 * 179.97438 * 16 14 13 18 18 C 1.37956 * 119.84932 * 179.71861 * 17 16 14 19 19 C 1.38363 * 120.14702 * 0.28830 * 18 17 16 20 20 N 1.48015 * 119.85491 * 180.02562 * 19 18 17 21 21 O 1.21803 * 120.00160 * 359.97438 * 20 19 18 22 22 O 1.21798 * 119.99912 * 179.97438 * 20 19 18 23 23 C 1.38359 * 120.29270 * 359.97438 * 19 18 17 24 24 C 1.37965 * 120.14128 * 359.97438 * 23 19 18 25 25 H 1.09000 * 109.47295 * 300.00088 * 1 2 3 26 26 H 1.09000 * 109.47219 * 59.99452 * 1 2 3 27 27 H 1.08996 * 109.47256 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46919 * 240.00302 * 2 1 3 29 29 H 1.08995 * 109.46776 * 119.99746 * 2 1 3 30 30 H 0.97008 * 120.00210 * 179.97438 * 8 7 5 31 31 H 0.96996 * 119.99915 * 264.99894 * 13 3 2 32 32 H 1.08002 * 120.07892 * 0.02562 * 17 16 14 33 33 H 1.08008 * 119.92898 * 180.30130 * 18 17 16 34 34 H 1.07994 * 119.92823 * 180.02562 * 23 19 18 35 35 H 1.07995 * 120.06782 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3366 2.1728 9 14 6.0049 0.8800 1.3812 10 1 6.5987 1.5453 0.1937 11 1 6.4000 1.6157 2.6092 12 1 6.4962 -0.5190 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6319 -0.4323 16 6 0.0438 3.3250 -2.6304 17 6 -1.2163 3.9126 -2.7531 18 6 -1.5730 4.5324 -3.9328 19 6 -0.6870 4.5672 -4.9950 20 7 -1.0762 5.2344 -6.2576 21 8 -2.1745 5.7510 -6.3600 22 8 -0.2982 5.2669 -7.1941 23 6 0.5616 3.9818 -4.8819 24 6 0.9311 3.3597 -3.7072 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0619 2.9495 31 1 2.2720 2.1232 -1.9977 32 1 -1.9086 3.8865 -1.9246 33 1 -2.5459 4.9918 -4.0274 34 1 1.2486 4.0128 -5.7145 35 1 1.9061 2.9036 -3.6200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177107.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:42 Heat of formation + Delta-G solvation = -19.910083 kcal Electronic energy + Delta-G solvation = -20931.216717 eV Core-core repulsion = 17511.476004 eV Total energy + Delta-G solvation = -3419.740713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.34907 -40.23765 -38.45186 -36.73953 -35.33647 -33.01384 -32.15623 -31.64496 -30.82237 -27.59145 -26.61084 -23.64839 -23.33374 -22.78058 -20.78756 -19.78859 -19.44879 -18.80580 -18.14664 -17.70222 -16.21611 -15.98565 -15.31779 -15.11324 -14.84881 -14.54593 -14.17789 -13.83243 -13.36997 -13.06322 -12.80764 -12.22396 -11.84218 -11.71760 -11.64140 -11.40427 -11.37217 -11.31101 -11.10279 -10.97688 -10.46102 -10.36075 -9.84715 -9.72155 -9.67845 -9.48390 -9.21554 -8.65875 -8.10848 -6.26364 -4.36978 -0.50398 0.69832 1.00313 1.19835 2.68853 3.14955 3.23380 3.25102 3.58814 3.64680 4.09623 4.20521 4.23025 4.54585 4.64984 4.91379 4.99074 5.05994 5.36626 5.46176 5.55295 5.83902 5.96045 6.23867 6.24491 6.29013 6.48603 6.86472 7.01053 7.10528 7.20504 7.42906 7.45760 7.53876 7.71191 8.00620 8.34531 8.55532 8.78872 9.30673 10.78922 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.003810 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.500746 B = 7347.297922 C = 8042.236770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.053 0.947 5 C -0.539 4.539 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.692 5.692 14 C 0.534 3.466 15 O -0.530 6.530 16 C -0.064 4.064 17 C -0.067 4.067 18 C -0.062 4.062 19 C -0.037 4.037 20 N 0.029 4.971 21 O -0.162 6.162 22 O -0.161 6.161 23 C -0.060 4.060 24 C -0.091 4.091 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.025 0.975 28 H 0.033 0.967 29 H 0.102 0.898 30 H 0.266 0.734 31 H 0.389 0.611 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.470 4.944 -11.231 13.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.071 0.929 5 C -0.577 4.577 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.340 5.340 14 C 0.318 3.682 15 O -0.409 6.409 16 C -0.068 4.068 17 C -0.087 4.087 18 C -0.081 4.081 19 C -0.120 4.120 20 N 0.548 4.452 21 O -0.377 6.377 22 O -0.377 6.377 23 C -0.079 4.079 24 C -0.110 4.110 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.223 0.777 32 H 0.178 0.822 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.781 4.471 -9.725 12.165 hybrid contribution 1.218 0.129 -0.625 1.375 sum -4.563 4.601 -10.350 12.211 Atomic orbital electron populations 1.21856 0.98303 0.98349 1.01122 1.21956 0.92636 0.99515 1.02617 1.18932 0.94605 0.89320 0.80376 0.92884 1.21218 0.90385 1.39560 1.06577 0.91924 1.24877 0.98798 0.94587 0.95272 1.69889 1.35222 1.37247 1.09334 0.86379 0.84539 0.77891 0.78222 1.19701 1.20792 1.20767 1.46556 1.13901 1.54591 1.18962 1.18002 0.83607 0.80145 0.86453 1.90791 1.51276 1.59518 1.39345 1.20978 0.94504 0.96037 0.95283 1.21379 0.95977 0.94281 0.97036 1.21044 0.99806 0.96591 0.90620 1.21295 0.98363 1.06334 0.86018 1.43656 1.00230 0.98839 1.02469 1.94538 1.08502 1.45975 1.88725 1.94538 1.48701 1.63728 1.30721 1.20990 0.93707 0.93810 0.99362 1.21485 1.00529 0.97964 0.91069 0.93002 0.94501 0.95571 0.94836 0.87975 0.92430 0.77705 0.82190 0.82510 0.82501 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.51 37.16 0.32 -2.55 16 2 C -0.13 -2.89 5.45 -26.73 -0.15 -3.04 16 3 C 0.27 6.19 2.24 -69.08 -0.15 6.04 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.22 8.73 -34.44 -0.30 -13.52 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.35 11.29 55.43 0.63 -22.73 16 9 Si 0.90 19.55 29.54 -169.99 -5.02 14.53 16 10 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.69 -12.63 4.97 -55.87 -0.28 -12.91 16 14 C 0.53 9.26 6.34 -12.33 -0.08 9.18 16 15 O -0.53 -10.93 13.48 5.32 0.07 -10.86 16 16 C -0.06 -0.84 5.87 -104.97 -0.62 -1.45 16 17 C -0.07 -0.77 9.60 -39.19 -0.38 -1.15 16 18 C -0.06 -0.63 9.54 -39.64 -0.38 -1.01 16 19 C -0.04 -0.42 6.86 -79.86 -0.55 -0.96 16 20 N 0.03 0.37 4.45 34.01 0.15 0.52 16 21 O -0.16 -2.16 18.43 -29.46 -0.54 -2.71 16 22 O -0.16 -2.15 18.43 -29.46 -0.54 -2.69 16 23 C -0.06 -0.59 9.54 -39.64 -0.38 -0.97 16 24 C -0.09 -0.95 9.54 -39.18 -0.37 -1.33 16 25 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 26 H 0.04 0.73 5.64 -51.93 -0.29 0.43 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 30 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.39 5.93 6.57 -40.82 -0.27 5.66 16 32 H 0.16 1.76 7.65 -52.49 -0.40 1.36 16 33 H 0.16 1.32 7.60 -52.48 -0.40 0.92 16 34 H 0.16 1.27 7.60 -52.49 -0.40 0.87 16 35 H 0.15 1.32 6.41 -52.49 -0.34 0.98 16 LS Contribution 304.60 15.07 4.59 4.59 Total: -1.00 -28.50 304.60 -7.67 -36.17 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -3.59 Total: 5.20 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -3.13 Total: -9.12 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.50 Total: -35.11 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -1.01 Total: -16.26 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.50 -7.67 -36.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177107.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.258 kcal (2) G-P(sol) polarization free energy of solvation -28.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds