Wall clock time and date at job start Tue Mar 31 2020 00:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 H 1.09005 * 109.47393 * 54.99909 * 3 2 1 5 5 C 1.50704 * 109.47076 * 174.99988 * 3 2 1 6 6 H 1.07996 * 119.99661 * 120.00042 * 5 3 2 7 7 C 1.37874 * 119.99606 * 300.00005 * 5 3 2 8 8 N 1.31511 * 120.00354 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99633 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47250 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47324 * 120.00139 * 9 7 5 12 12 H 1.48501 * 109.47471 * 239.99958 * 9 7 5 13 13 N 1.46501 * 109.47349 * 294.99887 * 3 2 1 14 14 C 1.34780 * 119.99572 * 85.00323 * 13 3 2 15 15 O 1.21548 * 120.00492 * 359.97438 * 14 13 3 16 16 C 1.47851 * 119.99404 * 180.02562 * 14 13 3 17 17 C 1.39576 * 120.13897 * 179.97438 * 16 14 13 18 18 C 1.37956 * 119.84932 * 179.71861 * 17 16 14 19 19 C 1.38363 * 120.14702 * 0.28830 * 18 17 16 20 20 N 1.48015 * 119.85491 * 180.02562 * 19 18 17 21 21 O 1.21803 * 120.00160 * 359.97438 * 20 19 18 22 22 O 1.21798 * 119.99912 * 179.97438 * 20 19 18 23 23 C 1.38359 * 120.29270 * 359.97438 * 19 18 17 24 24 C 1.37965 * 120.14128 * 359.97438 * 23 19 18 25 25 H 1.09000 * 109.47295 * 300.00088 * 1 2 3 26 26 H 1.09000 * 109.47219 * 59.99452 * 1 2 3 27 27 H 1.08996 * 109.47256 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46919 * 240.00302 * 2 1 3 29 29 H 1.08995 * 109.46776 * 119.99746 * 2 1 3 30 30 H 0.97008 * 120.00210 * 179.97438 * 8 7 5 31 31 H 0.96996 * 119.99915 * 264.99894 * 13 3 2 32 32 H 1.08002 * 120.07892 * 0.02562 * 17 16 14 33 33 H 1.08008 * 119.92898 * 180.30130 * 18 17 16 34 34 H 1.07994 * 119.92823 * 180.02562 * 23 19 18 35 35 H 1.07995 * 120.06782 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3366 2.1728 9 14 6.0049 0.8800 1.3812 10 1 6.5987 1.5453 0.1937 11 1 6.4000 1.6157 2.6092 12 1 6.4962 -0.5190 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3413 2.6319 -0.4323 16 6 0.0438 3.3250 -2.6304 17 6 -1.2163 3.9126 -2.7531 18 6 -1.5730 4.5324 -3.9328 19 6 -0.6870 4.5672 -4.9950 20 7 -1.0762 5.2344 -6.2576 21 8 -2.1745 5.7510 -6.3600 22 8 -0.2982 5.2669 -7.1941 23 6 0.5616 3.9818 -4.8819 24 6 0.9311 3.3597 -3.7072 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0619 2.9495 31 1 2.2720 2.1232 -1.9977 32 1 -1.9086 3.8865 -1.9246 33 1 -2.5459 4.9918 -4.0274 34 1 1.2486 4.0128 -5.7145 35 1 1.9061 2.9036 -3.6200 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177107.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:41 Heat of formation + Delta-G solvation = -35.975929 kcal Electronic energy + Delta-G solvation = -20931.913385 eV Core-core repulsion = 17511.476004 eV Total energy + Delta-G solvation = -3420.437380 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.31504 -41.43096 -39.66082 -37.73070 -37.02415 -34.54982 -33.56056 -32.65233 -32.23122 -29.17911 -27.87503 -25.22342 -24.28733 -24.02739 -22.19907 -21.32664 -20.45537 -19.78757 -19.57401 -18.66329 -17.88107 -17.42213 -16.62888 -16.40065 -16.08344 -15.90149 -15.29893 -14.92760 -14.61813 -14.45994 -14.21119 -13.75645 -13.48389 -13.18737 -12.89800 -12.79598 -12.72038 -12.56123 -12.37283 -12.32539 -12.16832 -12.08238 -11.61145 -11.06919 -10.97895 -10.74318 -10.55461 -10.50932 -9.74422 -8.17588 -6.34719 -1.48315 -0.12824 -0.00389 0.26180 1.44523 1.47095 1.57260 1.61696 2.21620 2.46137 2.48477 3.13142 3.26731 3.40118 3.53674 3.74774 3.83018 4.20402 4.48446 4.55872 4.57978 4.58828 4.60853 4.74300 4.94306 5.03507 5.05123 5.25370 5.32417 5.40360 5.48138 5.58072 5.76492 5.86624 6.14542 6.43605 6.71950 6.81249 7.27174 7.42480 8.87772 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.003810 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.500746 B = 7347.297922 C = 8042.236770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.005 0.995 5 C -0.548 4.548 6 H 0.075 0.925 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.287 1.287 12 H -0.281 1.281 13 N -0.691 5.691 14 C 0.535 3.465 15 O -0.569 6.569 16 C -0.078 4.078 17 C -0.065 4.065 18 C -0.052 4.052 19 C -0.041 4.041 20 N 0.029 4.971 21 O -0.175 6.175 22 O -0.166 6.166 23 C -0.049 4.049 24 C -0.078 4.078 25 H 0.028 0.972 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.663 5.317 -13.336 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.023 0.977 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.213 1.213 12 H -0.207 1.207 13 N -0.340 5.340 14 C 0.322 3.678 15 O -0.450 6.450 16 C -0.082 4.082 17 C -0.085 4.085 18 C -0.071 4.071 19 C -0.124 4.124 20 N 0.546 4.454 21 O -0.388 6.388 22 O -0.382 6.382 23 C -0.068 4.068 24 C -0.097 4.097 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.178 0.822 33 H 0.193 0.807 34 H 0.198 0.802 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.982 4.866 -11.882 13.773 hybrid contribution 0.916 0.056 -0.002 0.917 sum -4.066 4.922 -11.884 13.491 Atomic orbital electron populations 1.21703 0.96958 0.99313 1.00341 1.21808 0.93764 0.99007 1.01601 1.18470 0.93857 0.89280 0.80982 0.97744 1.21597 0.91270 1.38987 1.06783 0.90660 1.25712 1.03034 0.94394 0.95097 1.70039 1.36958 1.38263 1.09901 0.85368 0.79433 0.77739 0.78221 1.18276 1.21296 1.20663 1.46237 1.14917 1.54802 1.18005 1.18529 0.82574 0.79220 0.87496 1.90774 1.52232 1.60784 1.41251 1.20599 0.95957 0.97657 0.93978 1.21378 0.95476 0.94110 0.97503 1.21151 1.00456 0.95834 0.89683 1.21489 0.99092 1.06344 0.85451 1.43844 1.00060 0.98703 1.02802 1.94540 1.08784 1.46526 1.88986 1.94532 1.48634 1.63826 1.31244 1.21214 0.93457 0.92515 0.99636 1.21621 1.00729 0.97222 0.90135 0.95313 0.93690 0.93616 0.93759 0.90892 0.92601 0.75761 0.82187 0.80675 0.80165 0.80830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.51 71.98 0.61 -4.61 16 2 C -0.12 -5.60 5.45 30.59 0.17 -5.43 16 3 C 0.28 12.98 2.24 44.25 0.10 13.08 16 4 H 0.00 0.26 7.58 -2.38 -0.02 0.24 16 5 C -0.55 -26.77 8.73 25.60 0.22 -26.54 16 6 H 0.08 3.39 7.74 -2.91 -0.02 3.37 16 7 C 0.02 0.92 5.29 84.65 0.45 1.37 16 8 N -0.91 -49.69 11.29 21.45 0.24 -49.45 16 9 Si 0.97 39.81 29.54 68.60 2.03 41.83 16 10 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 11 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 13 N -0.69 -24.74 4.97 -448.96 -2.23 -26.97 16 14 C 0.54 18.34 6.34 86.79 0.55 18.89 16 15 O -0.57 -23.93 13.48 -3.87 -0.05 -23.98 16 16 C -0.08 -1.90 5.87 -20.09 -0.12 -2.02 16 17 C -0.07 -1.39 9.60 22.53 0.22 -1.17 16 18 C -0.05 -0.95 9.54 22.23 0.21 -0.74 16 19 C -0.04 -0.80 6.86 36.43 0.25 -0.55 16 20 N 0.03 0.67 4.45 -46.32 -0.21 0.46 16 21 O -0.17 -4.34 18.43 18.88 0.35 -4.00 16 22 O -0.17 -4.05 18.43 18.89 0.35 -3.70 16 23 C -0.05 -0.81 9.54 22.23 0.21 -0.60 16 24 C -0.08 -1.39 9.54 22.53 0.21 -1.18 16 25 H 0.03 1.29 7.84 -2.39 -0.02 1.27 16 26 H 0.04 1.76 5.64 -2.39 -0.01 1.75 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.07 3.79 5.95 -2.39 -0.01 3.77 16 30 H 0.26 13.71 8.31 -92.70 -0.77 12.93 16 31 H 0.41 11.60 6.57 -92.71 -0.61 10.99 16 32 H 0.16 3.40 7.65 -2.91 -0.02 3.38 16 33 H 0.18 2.52 7.60 -2.91 -0.02 2.50 16 34 H 0.18 2.17 7.60 -2.91 -0.02 2.14 16 35 H 0.17 2.34 6.41 -2.91 -0.02 2.32 16 Total: -1.00 -62.48 304.60 4.09 -58.39 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.53 Total: 16.93 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 3.09 Total: -9.52 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -2.20 Total: -75.96 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: 0.64 Total: -31.68 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.83 kcal Total: -62.48 4.09 -58.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177107.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.416 kcal (2) G-P(sol) polarization free energy of solvation -62.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds