Wall clock time and date at job start Tue Mar 31 2020 00:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47278 * 2 1 4 4 H 1.08998 * 109.46936 * 304.99968 * 3 2 1 5 5 C 1.50691 * 109.47249 * 185.00163 * 3 2 1 6 6 H 1.08009 * 119.99619 * 239.99979 * 5 3 2 7 7 C 1.37876 * 120.00404 * 59.99416 * 5 3 2 8 8 N 1.31519 * 119.99748 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00275 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47123 * 90.00211 * 9 7 5 11 11 H 1.48502 * 109.47239 * 210.00265 * 9 7 5 12 12 H 1.48505 * 109.47226 * 330.00527 * 9 7 5 13 13 N 1.46499 * 109.47215 * 64.99681 * 3 2 1 14 14 C 1.34774 * 120.00219 * 275.00244 * 13 3 2 15 15 O 1.21551 * 119.99937 * 0.02562 * 14 13 3 16 16 C 1.47851 * 120.00217 * 179.97438 * 14 13 3 17 17 C 1.39570 * 120.14377 * 180.02562 * 16 14 13 18 18 C 1.37961 * 119.85284 * 180.02562 * 17 16 14 19 19 C 1.38362 * 120.14091 * 0.02562 * 18 17 16 20 20 N 1.48020 * 119.85140 * 179.97438 * 19 18 17 21 21 O 1.21803 * 119.99894 * 359.97438 * 20 19 18 22 22 O 1.21799 * 119.99903 * 179.72400 * 20 19 18 23 23 C 1.38355 * 120.29496 * 0.24928 * 19 18 17 24 24 C 1.37965 * 120.14518 * 359.44968 * 23 19 18 25 25 H 1.08999 * 109.47073 * 299.99942 * 1 2 3 26 26 H 1.08995 * 109.47172 * 60.00311 * 1 2 3 27 27 H 1.08999 * 109.46860 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46864 * 239.99547 * 2 1 3 29 29 H 1.09001 * 109.46858 * 120.00009 * 2 1 3 30 30 H 0.97001 * 119.99447 * 179.97438 * 8 7 5 31 31 H 0.97004 * 119.99770 * 95.00184 * 13 3 2 32 32 H 1.08003 * 120.07562 * 0.02562 * 17 16 14 33 33 H 1.07998 * 119.93067 * 179.97438 * 18 17 16 34 34 H 1.08001 * 119.92964 * 179.71175 * 23 19 18 35 35 H 1.07997 * 120.07307 * 180.26884 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3373 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5549 -0.3502 -0.7601 11 1 6.3829 0.9222 -2.8173 12 1 6.5570 2.0738 -0.6902 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3413 2.6318 0.4323 16 6 0.0438 3.3250 2.6304 17 6 -1.2162 3.9126 2.7530 18 6 -1.5750 4.5278 3.9346 19 6 -0.6886 4.5636 4.9963 20 7 -1.0799 5.2259 6.2609 21 8 -2.1801 5.7382 6.3649 22 8 -0.3036 5.2546 7.1990 23 6 0.5641 3.9880 4.8794 24 6 0.9331 3.3642 3.7054 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0606 -2.9502 31 1 2.2720 2.1232 1.9978 32 1 -1.9089 3.8856 1.9248 33 1 -2.5495 4.9832 4.0307 34 1 1.2531 4.0234 5.7103 35 1 1.9096 2.9115 3.6169 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177108.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:44 Heat of formation + Delta-G solvation = -35.946439 kcal Electronic energy + Delta-G solvation = -20931.784482 eV Core-core repulsion = 17511.348380 eV Total energy + Delta-G solvation = -3420.436102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.31479 -41.43103 -39.66095 -37.73083 -37.02370 -34.54916 -33.56041 -32.65241 -32.23130 -29.17867 -27.87470 -25.22209 -24.28751 -24.02751 -22.19938 -21.32670 -20.45546 -19.78773 -19.57384 -18.66330 -17.87793 -17.42113 -16.62925 -16.40141 -16.08455 -15.90208 -15.30040 -14.92791 -14.61478 -14.45740 -14.21228 -13.75587 -13.48111 -13.17784 -12.92886 -12.79589 -12.67754 -12.56172 -12.37296 -12.32554 -12.18832 -12.08824 -11.61420 -11.07956 -10.97636 -10.74302 -10.54684 -10.50933 -9.74430 -8.17424 -6.34655 -1.48315 -0.12857 -0.00421 0.26146 1.45668 1.47069 1.56296 1.61667 2.21611 2.46165 2.48537 3.13169 3.26728 3.40100 3.53675 3.74762 3.82979 4.20387 4.48468 4.55767 4.57956 4.58804 4.60823 4.74281 4.94294 5.03473 5.05119 5.25335 5.32386 5.40316 5.48128 5.57847 5.76470 5.86665 6.14516 6.43592 6.71738 6.81251 7.27159 7.42499 8.87752 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.003810 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.982597 B = 7347.860185 C = 8042.452949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.278 3.722 4 H 0.005 0.995 5 C -0.549 4.549 6 H 0.075 0.925 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.691 5.691 14 C 0.535 3.465 15 O -0.569 6.569 16 C -0.078 4.078 17 C -0.065 4.065 18 C -0.052 4.052 19 C -0.041 4.041 20 N 0.029 4.971 21 O -0.175 6.175 22 O -0.166 6.166 23 C -0.049 4.049 24 C -0.078 4.078 25 H 0.044 0.956 26 H 0.028 0.972 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.161 0.839 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.648 5.329 13.305 15.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.023 0.977 5 C -0.588 4.588 6 H 0.093 0.907 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.188 1.188 13 N -0.340 5.340 14 C 0.322 3.678 15 O -0.450 6.450 16 C -0.082 4.082 17 C -0.085 4.085 18 C -0.071 4.071 19 C -0.124 4.124 20 N 0.546 4.454 21 O -0.388 6.388 22 O -0.382 6.382 23 C -0.068 4.068 24 C -0.097 4.097 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.242 0.758 32 H 0.178 0.822 33 H 0.193 0.807 34 H 0.198 0.802 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.964 4.887 11.841 13.738 hybrid contribution 0.918 0.051 0.023 0.919 sum -4.047 4.938 11.864 13.473 Atomic orbital electron populations 1.21703 0.96956 0.99314 1.00341 1.21811 0.93767 0.99013 1.01591 1.18460 0.93836 0.89271 0.80983 0.97741 1.21567 0.91277 1.39085 1.06822 0.90677 1.25715 1.03045 0.94387 0.95071 1.70037 1.37021 1.38239 1.09855 0.85413 0.79397 0.78881 0.77063 1.19780 1.21571 1.18817 1.46237 1.14919 1.54800 1.18005 1.18529 0.82573 0.79225 0.87496 1.90775 1.52237 1.60782 1.41252 1.20599 0.95965 0.97650 0.93981 1.21378 0.95483 0.94119 0.97488 1.21151 1.00496 0.95822 0.89651 1.21489 0.99002 1.06476 0.85406 1.43846 1.00073 0.98658 1.02834 1.94540 1.08559 1.46640 1.89095 1.94532 1.48862 1.63667 1.31174 1.21214 0.93449 0.92554 0.99612 1.21623 1.00739 0.97166 0.90177 0.93699 0.95299 0.93617 0.90891 0.93782 0.92596 0.75762 0.82186 0.80674 0.80163 0.80826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 8.51 71.98 0.61 -4.61 16 2 C -0.12 -5.60 5.45 30.59 0.17 -5.43 16 3 C 0.28 13.00 2.24 44.24 0.10 13.10 16 4 H 0.00 0.26 7.58 -2.39 -0.02 0.25 16 5 C -0.55 -26.84 8.73 25.60 0.22 -26.62 16 6 H 0.08 3.38 7.74 -2.91 -0.02 3.36 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.91 -49.72 11.29 21.45 0.24 -49.48 16 9 Si 0.97 39.80 29.54 68.60 2.03 41.82 16 10 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 11 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 13 N -0.69 -24.75 4.97 -449.00 -2.23 -26.98 16 14 C 0.54 18.35 6.34 86.79 0.55 18.90 16 15 O -0.57 -23.94 13.48 -3.87 -0.05 -24.00 16 16 C -0.08 -1.90 5.87 -20.09 -0.12 -2.02 16 17 C -0.07 -1.39 9.60 22.53 0.22 -1.17 16 18 C -0.05 -0.95 9.54 22.23 0.21 -0.74 16 19 C -0.04 -0.80 6.86 36.43 0.25 -0.55 16 20 N 0.03 0.67 4.45 -46.32 -0.21 0.46 16 21 O -0.17 -4.34 18.43 18.88 0.35 -4.00 16 22 O -0.17 -4.05 18.43 18.89 0.35 -3.70 16 23 C -0.05 -0.81 9.54 22.23 0.21 -0.60 16 24 C -0.08 -1.39 9.54 22.53 0.21 -1.18 16 25 H 0.04 1.76 5.64 -2.39 -0.01 1.75 16 26 H 0.03 1.30 7.84 -2.39 -0.02 1.28 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 3.79 5.95 -2.39 -0.01 3.77 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 31 H 0.41 11.60 6.57 -92.71 -0.61 10.99 16 32 H 0.16 3.40 7.65 -2.91 -0.02 3.38 16 33 H 0.18 2.52 7.60 -2.91 -0.02 2.50 16 34 H 0.18 2.17 7.60 -2.91 -0.02 2.14 16 35 H 0.17 2.34 6.41 -2.91 -0.02 2.32 16 Total: -1.00 -62.48 304.61 4.09 -58.39 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.53 Total: 17.03 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 3.09 Total: -9.55 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -2.20 Total: -76.00 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: 0.64 Total: -31.69 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Total: -62.48 4.09 -58.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177108.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.440 kcal (2) G-P(sol) polarization free energy of solvation -62.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds