Wall clock time and date at job start Tue Mar 31 2020 00:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46965 * 2 1 4 4 H 1.09002 * 109.47216 * 55.00165 * 3 2 1 5 5 C 1.50699 * 109.47197 * 174.99984 * 3 2 1 6 6 H 1.08004 * 120.00200 * 119.99864 * 5 3 2 7 7 C 1.37880 * 120.00213 * 300.00072 * 5 3 2 8 8 N 1.31510 * 119.99783 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99935 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46991 * 90.00144 * 9 7 5 11 11 H 1.48497 * 109.46736 * 209.99852 * 9 7 5 12 12 H 1.48496 * 109.47101 * 330.00110 * 9 7 5 13 13 N 1.46497 * 109.47390 * 295.00184 * 3 2 1 14 14 C 1.34776 * 119.99972 * 84.99537 * 13 3 2 15 15 O 1.21551 * 120.00413 * 0.02562 * 14 13 3 16 16 C 1.47850 * 120.00019 * 180.02562 * 14 13 3 17 17 C 1.39600 * 120.14144 * 55.27067 * 16 14 13 18 18 C 1.37938 * 119.85117 * 179.97438 * 17 16 14 19 19 C 1.38381 * 120.14745 * 0.02638 * 18 17 16 20 20 C 1.38343 * 120.28821 * 359.97438 * 19 18 17 21 21 C 1.37979 * 120.14376 * 359.67649 * 20 19 18 22 22 N 1.48015 * 120.07035 * 180.29985 * 21 20 19 23 23 O 1.21803 * 120.00230 * 6.56985 * 22 21 20 24 24 O 1.21794 * 120.00238 * 186.56633 * 22 21 20 25 25 H 1.09001 * 109.47043 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47368 * 60.00285 * 1 2 3 27 27 H 1.09003 * 109.47104 * 299.99578 * 1 2 3 28 28 H 1.08995 * 109.47368 * 119.99715 * 2 1 3 29 29 H 1.08998 * 109.47462 * 240.00113 * 2 1 3 30 30 H 0.97001 * 119.99896 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99845 * 265.00560 * 13 3 2 32 32 H 1.07999 * 120.07787 * 0.03078 * 17 16 14 33 33 H 1.08002 * 119.92736 * 180.02562 * 18 17 16 34 34 H 1.07998 * 119.85485 * 179.97438 * 19 18 17 35 35 H 1.07996 * 119.92339 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3367 2.1728 9 14 6.0050 0.8802 1.3810 10 1 6.4427 2.1131 2.0836 11 1 6.4391 -0.3108 2.1545 12 1 6.6130 0.8397 0.0269 13 7 1.6524 2.0976 -1.2517 14 6 0.4350 2.6644 -1.3669 15 8 -0.3412 2.6325 -0.4320 16 6 0.0436 3.3250 -2.6304 17 6 0.1022 2.6232 -3.8357 18 6 -0.2648 3.2452 -5.0109 19 6 -0.6899 4.5620 -4.9969 20 6 -0.7503 5.2631 -3.8058 21 6 -0.3928 4.6504 -2.6223 22 7 -0.4643 5.4000 -1.3480 23 8 -0.9506 6.5165 -1.3246 24 8 -0.0369 4.9004 -0.3227 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.8293 -0.0611 2.9498 31 1 2.2718 2.1232 -1.9977 32 1 0.4333 1.5952 -3.8480 33 1 -0.2204 2.7032 -5.9440 34 1 -0.9758 5.0445 -5.9198 35 1 -1.0825 6.2906 -3.8017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177512.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:46 Heat of formation + Delta-G solvation = -12.565936 kcal Electronic energy + Delta-G solvation = -21894.501519 eV Core-core repulsion = 18475.079272 eV Total energy + Delta-G solvation = -3419.422247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.95449 -39.87839 -38.39585 -36.19354 -35.06761 -32.61650 -32.12137 -31.75440 -30.61056 -27.16934 -26.38115 -24.13870 -23.02535 -22.37644 -20.75670 -19.48627 -19.09758 -18.28599 -17.74434 -17.20057 -16.18285 -15.78362 -15.52092 -15.35294 -14.77457 -14.32765 -14.07364 -13.43477 -13.20247 -12.70441 -12.64340 -12.10305 -12.00162 -11.53896 -11.27206 -11.19511 -11.01788 -10.87305 -10.76815 -10.66668 -10.32733 -10.22540 -9.80564 -9.66168 -9.53366 -9.21449 -9.05555 -8.50202 -7.89009 -6.12066 -4.21447 -0.16102 0.59966 1.44467 1.58371 2.93126 3.25486 3.29989 3.32710 3.35964 3.72430 4.22506 4.33411 4.42398 4.59112 4.74557 4.80299 5.14345 5.20217 5.39175 5.56656 5.64847 5.78515 6.08624 6.35533 6.40823 6.59635 6.62574 6.98573 7.17073 7.30935 7.38290 7.58206 7.68571 7.88653 7.92885 8.15879 8.54248 8.73972 8.99861 9.45100 10.93430 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.005234 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.380561 B = 5348.421075 C = 5523.816317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.057 0.943 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.693 5.693 14 C 0.537 3.463 15 O -0.506 6.506 16 C -0.051 4.051 17 C -0.094 4.094 18 C -0.074 4.074 19 C -0.113 4.113 20 C -0.062 4.062 21 C -0.012 4.012 22 N 0.018 4.982 23 O -0.187 6.187 24 O -0.095 6.095 25 H 0.023 0.977 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.101 0.899 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 4.581 -16.362 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.074 0.926 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.340 5.340 14 C 0.319 3.681 15 O -0.382 6.382 16 C -0.056 4.056 17 C -0.113 4.113 18 C -0.092 4.092 19 C -0.132 4.132 20 C -0.081 4.081 21 C -0.095 4.095 22 N 0.540 4.460 23 O -0.393 6.393 24 O -0.324 6.324 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.120 0.880 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.551 4.150 -16.116 17.884 hybrid contribution 1.231 0.212 -0.029 1.249 sum -5.320 4.362 -16.145 17.550 Atomic orbital electron populations 1.21854 0.98389 0.98103 1.01219 1.21950 0.92537 0.99693 1.02417 1.18896 0.94389 0.89058 0.80661 0.92552 1.21182 0.90526 1.39162 1.06430 0.92162 1.24860 0.98569 0.94764 0.95329 1.69884 1.35135 1.37469 1.09279 0.86459 0.84866 0.77698 0.78137 1.20499 1.21066 1.19949 1.46441 1.13540 1.55127 1.18922 1.17783 0.84345 0.80189 0.85776 1.90848 1.51261 1.58317 1.37725 1.20476 0.96138 0.91722 0.97252 1.21454 0.98878 1.01075 0.89931 1.21559 0.94197 0.94659 0.98764 1.21298 0.99763 0.94586 0.97506 1.21023 0.95518 1.01617 0.89913 1.21163 1.10414 0.92842 0.85119 1.43541 0.99109 1.00612 1.02765 1.94473 1.47100 1.05079 1.92691 1.94777 1.46374 1.70036 1.21248 0.95749 0.94664 0.92864 0.88044 0.95035 0.92502 0.78002 0.83043 0.83667 0.83533 0.82806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.55 16 4 H 0.06 1.64 7.58 -51.93 -0.39 1.25 16 5 C -0.53 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.46 11.29 55.43 0.63 -23.84 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.69 -14.08 5.00 -55.88 -0.28 -14.36 16 14 C 0.54 10.73 4.44 -12.33 -0.05 10.68 16 15 O -0.51 -12.00 11.86 -18.83 -0.22 -12.23 16 16 C -0.05 -0.79 5.64 -104.97 -0.59 -1.38 16 17 C -0.09 -1.02 9.76 -39.18 -0.38 -1.41 16 18 C -0.07 -0.56 10.03 -39.64 -0.40 -0.95 16 19 C -0.11 -0.85 10.04 -39.49 -0.40 -1.24 16 20 C -0.06 -0.67 9.55 -39.64 -0.38 -1.04 16 21 C -0.01 -0.18 6.85 -79.56 -0.55 -0.73 16 22 N 0.02 0.34 4.45 34.15 0.15 0.49 16 23 O -0.19 -3.41 18.47 -29.46 -0.54 -3.95 16 24 O -0.10 -2.14 14.97 -37.10 -0.56 -2.70 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.03 0.73 5.64 -51.93 -0.29 0.44 16 27 H 0.05 1.26 7.84 -51.93 -0.41 0.85 16 28 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 31 H 0.39 6.79 8.51 -40.82 -0.35 6.44 16 32 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.15 0.59 8.06 -52.49 -0.42 0.16 16 34 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.15 1.40 7.62 -52.49 -0.40 1.00 16 LS Contribution 303.09 15.07 4.57 4.57 Total: -1.00 -32.22 303.09 -8.21 -40.43 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -3.81 Total: 4.00 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -3.13 Total: -7.89 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.50 Total: -37.71 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -1.32 Total: -18.87 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.22 -8.21 -40.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177512.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.862 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds