Wall clock time and date at job start Tue Mar 31 2020 00:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47594 * 2 1 4 4 H 1.08995 * 109.46874 * 305.00088 * 3 2 1 5 5 C 1.50691 * 109.47316 * 184.99704 * 3 2 1 6 6 H 1.08002 * 120.00251 * 240.00140 * 5 3 2 7 7 C 1.37881 * 120.00175 * 60.00079 * 5 3 2 8 8 N 1.31510 * 119.99621 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00368 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47023 * 89.99919 * 9 7 5 11 11 H 1.48495 * 109.47449 * 210.00160 * 9 7 5 12 12 H 1.48502 * 109.47317 * 330.00573 * 9 7 5 13 13 N 1.46505 * 109.46938 * 64.99634 * 3 2 1 14 14 C 1.34775 * 120.00227 * 275.00491 * 13 3 2 15 15 O 1.21554 * 120.00006 * 359.97438 * 14 13 3 16 16 C 1.47843 * 120.00049 * 180.02562 * 14 13 3 17 17 C 1.39593 * 120.14579 * 353.50608 * 16 14 13 18 18 C 1.37934 * 119.85367 * 179.69762 * 17 16 14 19 19 C 1.38386 * 120.14389 * 0.59771 * 18 17 16 20 20 C 1.38335 * 120.29057 * 359.67652 * 19 18 17 21 21 C 1.37978 * 120.14694 * 0.02562 * 20 19 18 22 22 N 1.48014 * 120.07474 * 180.02562 * 21 20 19 23 23 O 1.21802 * 120.00127 * 129.12174 * 22 21 20 24 24 O 1.21805 * 119.99682 * 309.11731 * 22 21 20 25 25 H 1.09002 * 109.47013 * 300.00489 * 1 2 3 26 26 H 1.08996 * 109.47527 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46606 * 59.99946 * 1 2 3 28 28 H 1.09001 * 109.47205 * 120.00250 * 2 1 3 29 29 H 1.09003 * 109.47294 * 239.99980 * 2 1 3 30 30 H 0.97000 * 120.00361 * 179.97438 * 8 7 5 31 31 H 0.96997 * 119.99662 * 94.99881 * 13 3 2 32 32 H 1.08007 * 120.07076 * 359.97438 * 17 16 14 33 33 H 1.08000 * 119.92716 * 180.29167 * 18 17 16 34 34 H 1.07995 * 119.85225 * 179.69782 * 19 18 17 35 35 H 1.08002 * 119.92802 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1472 1.8887 0.6524 7 6 4.1433 0.8782 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8810 -1.3817 10 1 6.5548 -0.3505 -0.7600 11 1 6.3831 0.9221 -2.8171 12 1 6.5571 2.0735 -0.6900 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3410 2.6326 0.4320 16 6 0.0443 3.3259 2.6301 17 6 0.8761 3.2487 3.7484 18 6 0.5084 3.8734 4.9220 19 6 -0.6879 4.5651 4.9958 20 6 -1.5195 4.6405 3.8929 21 6 -1.1607 4.0253 2.7111 22 7 -2.0513 4.1076 1.5318 23 8 -1.6049 4.4604 0.4549 24 8 -3.2307 3.8224 1.6384 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.8293 -0.0613 -2.9497 31 1 2.2719 2.1231 1.9978 32 1 1.8076 2.7049 3.6936 33 1 1.1533 3.8185 5.7866 34 1 -0.9734 5.0483 5.9185 35 1 -2.4516 5.1822 3.9569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177514.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:48 Heat of formation + Delta-G solvation = -7.622828 kcal Electronic energy + Delta-G solvation = -21872.789858 eV Core-core repulsion = 18453.581961 eV Total energy + Delta-G solvation = -3419.207898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.85378 -39.93668 -38.43877 -36.04325 -35.20182 -32.86287 -32.04738 -31.80823 -30.58074 -27.22731 -26.31137 -24.22002 -23.13758 -22.27949 -20.75850 -19.56767 -19.15076 -18.25987 -17.84512 -17.12478 -16.21967 -15.76770 -15.33718 -15.10090 -14.90679 -14.66820 -14.24170 -13.45579 -13.17251 -12.75531 -12.65789 -12.12526 -12.05088 -11.58544 -11.31123 -11.17718 -11.07182 -10.89754 -10.75272 -10.61990 -10.35655 -10.26364 -9.77473 -9.71416 -9.49701 -9.30768 -9.11508 -8.57319 -7.98262 -6.17625 -4.28159 0.05897 0.53629 1.25509 1.64999 2.78463 3.20639 3.27741 3.29578 3.58341 3.69357 4.18602 4.28311 4.37112 4.55743 4.68238 4.80660 5.09393 5.14268 5.28554 5.58601 5.60745 5.79946 6.07214 6.33783 6.38549 6.59087 6.69929 6.95641 7.12217 7.22445 7.31403 7.52063 7.61703 7.81243 8.01636 8.09704 8.43610 8.65051 8.88914 9.38699 10.87738 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022900 B = 0.005244 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.413814 B = 5337.834897 C = 6004.965480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.056 0.944 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.879 5.879 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.690 5.690 14 C 0.525 3.475 15 O -0.513 6.513 16 C -0.069 4.069 17 C -0.085 4.085 18 C -0.086 4.086 19 C -0.100 4.100 20 C -0.076 4.076 21 C 0.012 3.988 22 N 0.021 4.979 23 O -0.075 6.075 24 O -0.188 6.188 25 H 0.032 0.968 26 H 0.025 0.975 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.102 0.898 30 H 0.266 0.734 31 H 0.387 0.613 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 6.494 15.880 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.073 0.927 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.339 5.339 14 C 0.308 3.692 15 O -0.390 6.390 16 C -0.074 4.074 17 C -0.104 4.104 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.095 4.095 21 C -0.071 4.071 22 N 0.550 4.450 23 O -0.313 6.313 24 O -0.394 6.394 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.221 0.779 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.458 6.250 15.655 17.436 hybrid contribution 1.087 -0.042 0.076 1.091 sum -3.371 6.208 15.731 17.244 Atomic orbital electron populations 1.21843 0.98293 0.98237 1.01134 1.21950 0.92580 0.99566 1.02463 1.18926 0.94507 0.89226 0.80429 0.92659 1.21162 0.90362 1.39537 1.06546 0.92076 1.24877 0.98698 0.94687 0.95278 1.69884 1.35235 1.37198 1.09293 0.86435 0.84680 0.78395 0.77511 1.20543 1.20975 1.19866 1.46451 1.13637 1.54825 1.18944 1.17983 0.84304 0.80688 0.86227 1.90935 1.50926 1.58340 1.38808 1.20362 0.92278 0.97494 0.97225 1.21509 0.99312 0.98333 0.91250 1.21490 0.96273 0.94589 0.98069 1.21285 0.93840 0.98727 0.98011 1.20870 1.00722 0.97916 0.89996 1.21070 0.92664 1.05633 0.87697 1.43242 1.00912 0.98871 1.01982 1.94621 1.78999 1.44385 1.13261 1.94501 0.99857 1.53540 1.91500 0.94888 0.95635 0.92802 0.95017 0.87963 0.92405 0.77917 0.83179 0.83666 0.83548 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.16 0.32 -2.81 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.64 2.24 -69.08 -0.15 6.48 16 4 H 0.06 1.59 7.58 -51.93 -0.39 1.20 16 5 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.24 11.29 55.43 0.63 -23.61 16 9 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.69 -13.82 4.97 -55.88 -0.28 -14.10 16 14 C 0.53 10.55 6.21 -12.33 -0.08 10.48 16 15 O -0.51 -12.25 10.10 -19.30 -0.19 -12.44 16 16 C -0.07 -1.08 5.87 -104.97 -0.62 -1.69 16 17 C -0.08 -0.92 9.52 -39.19 -0.37 -1.30 16 18 C -0.09 -0.66 10.03 -39.64 -0.40 -1.06 16 19 C -0.10 -0.76 10.04 -39.49 -0.40 -1.15 16 20 C -0.08 -0.82 9.82 -39.64 -0.39 -1.21 16 21 C 0.01 0.18 6.32 -79.55 -0.50 -0.32 16 22 N 0.02 0.40 3.61 34.16 0.12 0.52 16 23 O -0.07 -1.60 16.08 -37.25 -0.60 -2.20 16 24 O -0.19 -3.60 19.14 -29.46 -0.56 -4.17 16 25 H 0.03 0.73 5.64 -51.93 -0.29 0.44 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.32 7.85 -51.92 -0.41 0.91 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.39 6.43 6.62 -40.82 -0.27 6.16 16 32 H 0.15 1.36 6.46 -52.48 -0.34 1.02 16 33 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 300.68 15.07 4.53 4.53 Total: -1.00 -32.18 300.68 -8.17 -40.36 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -3.67 Total: 4.13 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -3.13 Total: -8.12 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.47 Total: -37.19 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -1.36 Total: -18.81 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.18 -8.17 -40.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177514.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.733 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds