Wall clock time and date at job start Tue Mar 31 2020 00:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21555 * 120.00020 * 359.97438 * 14 13 3 16 16 C 1.47849 * 120.00163 * 179.97438 * 14 13 3 17 17 C 1.39592 * 120.14197 * 359.72136 * 16 14 13 18 18 C 1.37943 * 119.84924 * 179.76284 * 17 16 14 19 19 C 1.38380 * 120.14542 * 0.51500 * 18 17 16 20 20 C 1.38335 * 120.29131 * 359.74335 * 19 18 17 21 21 N 1.48012 * 119.92758 * 179.97438 * 20 19 18 22 22 O 1.21799 * 120.00453 * 180.02562 * 21 20 19 23 23 O 1.21806 * 119.99873 * 0.02562 * 21 20 19 24 24 C 1.37982 * 120.14788 * 359.97438 * 20 19 18 25 25 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 26 26 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 31 31 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 32 32 H 1.07999 * 120.07523 * 0.02634 * 17 16 14 33 33 H 1.08002 * 119.92432 * 180.24797 * 18 17 16 34 34 H 1.07997 * 119.85530 * 179.75940 * 19 18 17 35 35 H 1.08001 * 120.07552 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3362 2.6299 -0.4654 16 6 0.0753 3.3148 -2.6613 17 6 0.9794 3.3545 -3.7241 18 6 0.6205 3.9640 -4.9084 19 6 -0.6287 4.5445 -5.0405 20 6 -1.5273 4.5132 -3.9893 21 7 -2.8611 5.1372 -4.1392 22 8 -3.6532 5.1109 -3.2144 23 8 -3.1666 5.6770 -5.1876 24 6 -1.1831 3.9017 -2.8013 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8117 0.4042 0.4383 31 1 2.2954 2.1150 -1.9977 32 1 1.9562 2.9054 -3.6209 33 1 1.3177 3.9920 -5.7329 34 1 -0.9033 5.0238 -5.9685 35 1 -1.8857 3.8776 -1.9815 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177526.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:51 Heat of formation + Delta-G solvation = -19.594301 kcal Electronic energy + Delta-G solvation = -21142.655460 eV Core-core repulsion = 17722.928440 eV Total energy + Delta-G solvation = -3419.727020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.34287 -40.31882 -38.58123 -36.71577 -35.48223 -33.09204 -32.29496 -31.87324 -31.07202 -27.49054 -26.68325 -24.36622 -22.76062 -22.46713 -21.11141 -19.89968 -19.44511 -18.78141 -17.82176 -17.68842 -17.01242 -16.43719 -15.92849 -15.26337 -14.92648 -14.57154 -14.02873 -13.51425 -13.43372 -12.77355 -12.70925 -12.55256 -12.42107 -12.12758 -11.83553 -11.70733 -11.35549 -11.28449 -10.94248 -10.83159 -10.54877 -10.01219 -9.96526 -9.93532 -9.63508 -9.61483 -9.32100 -8.37992 -8.34454 -6.73830 -4.34198 -0.40361 0.37335 1.09135 1.18336 2.61422 3.32717 3.38887 3.44135 3.54044 3.55385 4.09567 4.24115 4.34198 4.44282 4.53396 4.57493 4.95842 4.99433 5.23853 5.39555 5.60027 5.64892 5.87474 5.94775 5.97894 6.14781 6.22292 6.54855 6.67698 6.78277 6.89372 7.15696 7.22698 7.47237 7.47806 8.10713 8.19038 8.48335 8.70003 9.30888 10.64445 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.004176 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.045389 B = 6703.078190 C = 7163.447395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.250 3.750 4 H 0.044 0.956 5 C -0.634 4.634 6 H 0.063 0.937 7 C 0.052 3.948 8 N -0.882 5.882 9 Si 1.028 2.972 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.689 5.689 14 C 0.542 3.458 15 O -0.534 6.534 16 C -0.118 4.118 17 C -0.039 4.039 18 C -0.122 4.122 19 C -0.042 4.042 20 C -0.053 4.053 21 N 0.030 4.970 22 O -0.154 6.154 23 O -0.163 6.163 24 C -0.003 4.003 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.131 5.022 -12.762 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.147 3.853 4 H 0.062 0.938 5 C -0.671 4.671 6 H 0.081 0.919 7 C -0.158 4.158 8 N -0.513 5.513 9 Si 0.854 3.146 10 H -0.207 1.207 11 H -0.206 1.206 12 H -0.198 1.198 13 N -0.336 5.336 14 C 0.326 3.674 15 O -0.413 6.413 16 C -0.122 4.122 17 C -0.058 4.058 18 C -0.140 4.140 19 C -0.062 4.062 20 C -0.136 4.136 21 N 0.550 4.450 22 O -0.371 6.371 23 O -0.378 6.378 24 C -0.023 4.023 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.173 0.827 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.850 4.376 -10.369 13.721 hybrid contribution -0.069 0.490 -2.169 2.225 sum -7.919 4.865 -12.538 15.607 Atomic orbital electron populations 1.21911 0.97349 0.99134 1.01926 1.22244 0.93711 0.99467 1.01653 1.19127 0.96066 0.88609 0.81454 0.93809 1.21930 0.89420 1.50678 1.05059 0.91887 1.25602 0.96562 0.91511 1.02077 1.70883 1.13813 1.35973 1.30628 0.84244 0.76111 0.77757 0.76456 1.20698 1.20565 1.19827 1.46251 1.13757 1.55101 1.18540 1.17918 0.83426 0.79738 0.86317 1.90793 1.50585 1.59637 1.40262 1.20327 0.93941 1.01511 0.96427 1.21945 0.99325 0.92911 0.91597 1.21186 0.95681 0.98483 0.98670 1.21217 0.92110 0.95041 0.97790 1.21012 0.85476 1.08264 0.98852 1.43577 1.02562 0.98731 1.00162 1.94581 1.46278 1.63322 1.32968 1.94520 1.82235 1.44214 1.16848 1.21142 0.96330 0.89309 0.95529 0.93486 0.94858 0.92824 0.93055 0.91556 0.91785 0.77360 0.83331 0.82898 0.82671 0.81635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.53 37.16 0.32 -2.48 16 2 C -0.13 -2.77 5.37 -26.73 -0.14 -2.91 16 3 C 0.25 5.55 1.84 -69.08 -0.13 5.43 16 4 H 0.04 1.07 6.12 -51.93 -0.32 0.75 16 5 C -0.63 -15.99 8.92 -34.44 -0.31 -16.30 16 6 H 0.06 1.65 7.96 -52.48 -0.42 1.23 16 7 C 0.05 1.37 5.15 -17.82 -0.09 1.28 16 8 N -0.88 -24.89 13.70 55.43 0.76 -24.13 16 9 Si 1.03 23.90 26.56 -169.99 -4.51 19.39 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.00 6.34 56.52 0.36 -5.64 16 13 N -0.69 -12.43 4.98 -55.88 -0.28 -12.71 16 14 C 0.54 9.36 6.38 -12.33 -0.08 9.28 16 15 O -0.53 -10.92 13.48 5.32 0.07 -10.85 16 16 C -0.12 -1.55 5.87 -104.97 -0.62 -2.17 16 17 C -0.04 -0.37 9.54 -39.18 -0.37 -0.75 16 18 C -0.12 -0.90 10.03 -39.64 -0.40 -1.30 16 19 C -0.04 -0.37 9.55 -39.49 -0.38 -0.75 16 20 C -0.05 -0.63 6.84 -80.01 -0.55 -1.18 16 21 N 0.03 0.41 4.45 33.93 0.15 0.56 16 22 O -0.15 -2.31 18.44 -29.46 -0.54 -2.86 16 23 O -0.16 -2.20 18.44 -29.46 -0.54 -2.75 16 24 C 0.00 -0.04 9.10 -39.18 -0.36 -0.40 16 25 H 0.05 0.88 5.63 -51.93 -0.29 0.59 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 1.08 7.89 -51.93 -0.41 0.67 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.47 5.77 -51.93 -0.30 1.17 16 30 H 0.27 7.55 8.73 -40.82 -0.36 7.20 16 31 H 0.39 5.99 6.56 -40.82 -0.27 5.72 16 32 H 0.15 1.17 6.41 -52.49 -0.34 0.83 16 33 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.16 1.05 7.60 -52.49 -0.40 0.65 16 35 H 0.17 2.32 7.20 -52.49 -0.38 1.95 16 LS Contribution 301.93 15.07 4.55 4.55 Total: -1.00 -30.08 301.93 -7.03 -37.11 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -3.58 Total: 3.94 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -3.10 Total: -12.25 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.63 Total: -36.28 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -1.01 Total: -16.46 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -4.51 Total: 19.39 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.08 -7.03 -37.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177526.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.516 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds