Wall clock time and date at job start Tue Mar 31 2020 00:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.08007 * 119.99884 * 114.30746 * 5 3 2 7 7 C 1.37876 * 120.00513 * 294.30890 * 5 3 2 8 8 N 1.31509 * 120.00760 * 153.95370 * 7 5 3 9 9 Si 1.86803 * 119.99588 * 333.95194 * 7 5 3 10 10 H 1.48501 * 109.47184 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47436 * 299.99993 * 9 7 5 12 12 H 1.48504 * 109.47124 * 60.00159 * 9 7 5 13 13 N 1.46495 * 109.47062 * 294.28295 * 3 2 1 14 14 C 1.34772 * 120.00313 * 85.00200 * 13 3 2 15 15 O 1.21555 * 120.00020 * 359.97438 * 14 13 3 16 16 C 1.47849 * 120.00163 * 179.97438 * 14 13 3 17 17 C 1.39592 * 120.14197 * 359.72136 * 16 14 13 18 18 C 1.37943 * 119.84924 * 179.76284 * 17 16 14 19 19 C 1.38380 * 120.14542 * 0.51500 * 18 17 16 20 20 C 1.38335 * 120.29131 * 359.74335 * 19 18 17 21 21 N 1.48012 * 119.92758 * 179.97438 * 20 19 18 22 22 O 1.21799 * 120.00453 * 180.02562 * 21 20 19 23 23 O 1.21806 * 119.99873 * 0.02562 * 21 20 19 24 24 C 1.37982 * 120.14788 * 359.97438 * 20 19 18 25 25 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 26 26 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 28 28 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 29 29 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 30 30 H 0.97007 * 119.99209 * 354.96251 * 8 7 5 31 31 H 0.97005 * 120.00069 * 264.99241 * 13 3 2 32 32 H 1.07999 * 120.07523 * 0.02634 * 17 16 14 33 33 H 1.08002 * 119.92432 * 180.24797 * 18 17 16 34 34 H 1.07997 * 119.85530 * 179.75940 * 19 18 17 35 35 H 1.08001 * 120.07552 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1586 1.8024 -0.6686 7 6 4.1236 0.9911 1.3055 8 7 5.3469 0.5087 1.2833 9 14 3.1765 1.0613 2.9140 10 1 4.0191 0.5167 4.0089 11 1 2.8199 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6671 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3362 2.6299 -0.4654 16 6 0.0753 3.3148 -2.6613 17 6 0.9794 3.3545 -3.7241 18 6 0.6205 3.9640 -4.9084 19 6 -0.6287 4.5445 -5.0405 20 6 -1.5273 4.5132 -3.9893 21 7 -2.8611 5.1372 -4.1392 22 8 -3.6532 5.1109 -3.2144 23 8 -3.1666 5.6770 -5.1876 24 6 -1.1831 3.9017 -2.8013 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8117 0.4042 0.4383 31 1 2.2954 2.1150 -1.9977 32 1 1.9562 2.9054 -3.6209 33 1 1.3177 3.9920 -5.7329 34 1 -0.9033 5.0238 -5.9685 35 1 -1.8857 3.8776 -1.9815 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177526.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:50 Heat of formation + Delta-G solvation = -38.524388 kcal Electronic energy + Delta-G solvation = -21143.476330 eV Core-core repulsion = 17722.928440 eV Total energy + Delta-G solvation = -3420.547890 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.35694 -41.49492 -39.73753 -37.76640 -37.14050 -34.66951 -33.85226 -32.81808 -32.31436 -29.22985 -27.68167 -25.55130 -24.23059 -23.61693 -22.40711 -21.46914 -20.73169 -19.82298 -19.54553 -18.70982 -18.03735 -17.65195 -17.21274 -16.60535 -16.14605 -15.68853 -15.29258 -15.10899 -14.63273 -14.43495 -14.39481 -13.92543 -13.60145 -13.40608 -13.08006 -12.76030 -12.68177 -12.53950 -12.37517 -12.36873 -12.32050 -11.80366 -11.63419 -11.26365 -11.06494 -10.81023 -10.52220 -10.42268 -9.92213 -8.82438 -6.42017 -1.34670 -0.54241 0.17118 0.23467 1.46239 1.48726 1.59906 1.68546 2.16367 2.41172 2.41740 2.92156 3.32481 3.33157 3.58650 3.63083 3.77190 4.06125 4.27874 4.36374 4.45555 4.49506 4.58369 4.79024 4.82137 4.86617 5.03399 5.07356 5.16026 5.23859 5.32509 5.50976 5.55551 5.66007 6.02552 6.39483 6.52785 6.67774 7.19015 7.30319 8.55559 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.004176 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.045389 B = 6703.078190 C = 7163.447395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.254 3.746 4 H 0.022 0.978 5 C -0.626 4.626 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.914 5.914 9 Si 1.056 2.944 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.256 1.256 13 N -0.688 5.688 14 C 0.543 3.457 15 O -0.573 6.573 16 C -0.136 4.136 17 C -0.026 4.026 18 C -0.097 4.097 19 C -0.024 4.024 20 C -0.066 4.066 21 N 0.031 4.969 22 O -0.212 6.212 23 O -0.137 6.137 24 C -0.014 4.014 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.264 0.736 31 H 0.406 0.594 32 H 0.170 0.830 33 H 0.204 0.796 34 H 0.186 0.814 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 5.408 -15.604 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.149 3.851 4 H 0.040 0.960 5 C -0.664 4.664 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.547 5.547 9 Si 0.879 3.121 10 H -0.207 1.207 11 H -0.201 1.201 12 H -0.181 1.181 13 N -0.337 5.337 14 C 0.330 3.670 15 O -0.454 6.454 16 C -0.140 4.140 17 C -0.045 4.045 18 C -0.115 4.115 19 C -0.043 4.043 20 C -0.149 4.149 21 N 0.547 4.453 22 O -0.416 6.416 23 O -0.362 6.362 24 C -0.034 4.034 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.243 0.757 32 H 0.187 0.813 33 H 0.221 0.779 34 H 0.203 0.797 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.739 4.747 -13.138 15.970 hybrid contribution -0.058 0.451 -1.513 1.580 sum -7.797 5.199 -14.651 17.392 Atomic orbital electron populations 1.21793 0.95853 1.00400 1.01278 1.22134 0.94946 0.98306 1.01340 1.18801 0.93887 0.89550 0.82815 0.96003 1.22107 0.91056 1.48974 1.04217 0.93223 1.26503 0.96664 0.91341 1.04697 1.70963 1.14967 1.38530 1.30238 0.83851 0.75930 0.78242 0.74048 1.20730 1.20106 1.18080 1.45974 1.14699 1.55377 1.17676 1.18424 0.82375 0.78812 0.87408 1.90770 1.51551 1.60926 1.42156 1.19876 0.94985 1.03429 0.95714 1.22246 0.99172 0.91995 0.91079 1.21710 0.95421 0.95668 0.98723 1.21729 0.91556 0.93468 0.97508 1.21108 0.85028 1.09153 0.99573 1.43840 1.03153 0.98484 0.99827 1.94602 1.47581 1.65767 1.33631 1.94473 1.82340 1.42918 1.16468 1.20931 0.96230 0.90470 0.95804 0.93380 0.92531 0.94291 0.92262 0.92960 0.92623 0.75697 0.81294 0.77918 0.79652 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 8.53 71.98 0.61 -4.49 16 2 C -0.13 -5.30 5.37 30.60 0.16 -5.13 16 3 C 0.25 11.21 1.84 44.25 0.08 11.29 16 4 H 0.02 1.08 6.12 -2.39 -0.01 1.07 16 5 C -0.63 -31.62 8.92 25.60 0.23 -31.39 16 6 H 0.05 2.59 7.96 -2.91 -0.02 2.57 16 7 C 0.01 0.63 5.15 84.66 0.44 1.07 16 8 N -0.91 -52.20 13.70 21.45 0.29 -51.91 16 9 Si 1.06 48.48 26.56 68.60 1.82 50.30 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.26 -10.99 6.34 99.48 0.63 -10.36 16 13 N -0.69 -24.24 4.98 -448.98 -2.24 -26.48 16 14 C 0.54 18.59 6.38 86.79 0.55 19.15 16 15 O -0.57 -23.98 13.48 -3.89 -0.05 -24.03 16 16 C -0.14 -3.38 5.87 -20.09 -0.12 -3.50 16 17 C -0.03 -0.40 9.54 22.53 0.21 -0.18 16 18 C -0.10 -0.88 10.03 22.23 0.22 -0.66 16 19 C -0.02 -0.31 9.55 22.33 0.21 -0.09 16 20 C -0.07 -1.44 6.84 36.34 0.25 -1.19 16 21 N 0.03 0.81 4.45 -46.56 -0.21 0.61 16 22 O -0.21 -6.64 18.44 18.89 0.35 -6.29 16 23 O -0.14 -3.41 18.44 18.88 0.35 -3.06 16 24 C -0.01 -0.37 9.10 22.53 0.20 -0.16 16 25 H 0.05 1.78 5.63 -2.39 -0.01 1.76 16 26 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.04 1.56 7.89 -2.39 -0.02 1.54 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.05 2.29 5.77 -2.39 -0.01 2.27 16 30 H 0.26 14.95 8.73 -92.70 -0.81 14.14 16 31 H 0.41 11.69 6.56 -92.70 -0.61 11.09 16 32 H 0.17 1.89 6.41 -2.91 -0.02 1.87 16 33 H 0.20 -0.01 8.06 -2.91 -0.02 -0.03 16 34 H 0.19 1.38 7.60 -2.91 -0.02 1.35 16 35 H 0.14 4.30 7.20 -2.91 -0.02 4.28 16 Total: -1.00 -68.08 301.93 3.80 -64.28 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.42 Total: 11.87 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 3.06 Total: -15.29 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -2.15 Total: -77.78 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: 0.64 Total: -33.38 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 1.82 Total: 50.30 kcal Total: -68.08 3.80 -64.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177526.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.760 kcal (2) G-P(sol) polarization free energy of solvation -68.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds