Wall clock time and date at job start Tue Mar 31 2020 00:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21548 * 120.00126 * 359.97438 * 14 13 3 16 16 C 1.47854 * 119.99892 * 179.97438 * 14 13 3 17 17 C 1.39595 * 120.14151 * 359.72033 * 16 14 13 18 18 C 1.37939 * 119.84842 * 179.76317 * 17 16 14 19 19 C 1.38382 * 120.14491 * 0.52091 * 18 17 16 20 20 C 1.38338 * 120.29017 * 359.73396 * 19 18 17 21 21 N 1.48023 * 119.92343 * 179.97438 * 20 19 18 22 22 O 1.21802 * 119.99474 * 180.02562 * 21 20 19 23 23 O 1.21797 * 120.00021 * 0.02562 * 21 20 19 24 24 C 1.37971 * 120.14784 * 0.02562 * 20 19 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.07995 * 120.07477 * 0.03138 * 17 16 14 33 33 H 1.07997 * 119.92774 * 180.25764 * 18 17 16 34 34 H 1.07995 * 119.85311 * 179.76120 * 19 18 17 35 35 H 1.08006 * 120.07384 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3409 2.6326 0.4321 16 6 0.0439 3.3249 2.6306 17 6 0.9307 3.3579 3.7081 18 6 0.5612 3.9801 4.8825 19 6 -0.6894 4.5611 4.9974 20 6 -1.5749 4.5272 3.9351 21 7 -2.9108 5.1509 4.0672 22 8 -3.6916 5.1213 3.1328 23 8 -3.2292 5.6935 5.1101 24 6 -1.2160 3.9125 2.7532 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 1.9054 2.9012 3.6210 33 1 1.2479 4.0100 5.7155 34 1 -0.9752 5.0436 5.9204 35 1 -1.9081 3.8870 1.9245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:53 Heat of formation + Delta-G solvation = -19.207080 kcal Electronic energy + Delta-G solvation = -21073.892737 eV Core-core repulsion = 17654.182508 eV Total energy + Delta-G solvation = -3419.710229 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.28589 -40.19884 -38.43235 -36.66160 -35.29129 -33.02342 -32.08027 -31.74834 -30.73052 -27.26807 -26.60898 -24.37987 -22.96264 -22.66614 -20.91817 -19.74335 -19.26747 -18.72519 -17.63357 -17.31673 -16.75112 -16.09694 -15.63086 -15.11069 -14.80620 -14.60933 -14.29764 -13.55436 -13.28317 -12.83388 -12.60717 -12.22042 -12.03171 -11.65911 -11.63864 -11.36736 -11.29472 -11.23222 -11.11705 -10.93228 -10.45782 -10.32867 -9.90381 -9.78599 -9.54591 -9.43540 -9.20334 -8.62980 -8.06920 -6.23922 -4.34795 -0.33902 0.45695 1.15497 1.24534 2.71069 3.17359 3.23395 3.24055 3.59386 3.68129 4.16180 4.22606 4.33303 4.52068 4.62328 4.66451 5.07235 5.09602 5.31414 5.47668 5.68157 5.73217 5.95154 6.27605 6.28526 6.32877 6.52600 6.89925 7.05287 7.15311 7.24351 7.46185 7.52943 7.56036 7.74274 8.03540 8.38705 8.58943 8.83076 9.32557 10.81310 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030545 B = 0.003953 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.454628 B = 7081.411034 C = 7631.876961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.540 4.540 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.695 5.695 14 C 0.540 3.460 15 O -0.532 6.532 16 C -0.116 4.116 17 C -0.040 4.040 18 C -0.122 4.122 19 C -0.044 4.044 20 C -0.053 4.053 21 N 0.030 4.970 22 O -0.155 6.155 23 O -0.164 6.164 24 C -0.004 4.004 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.025 0.975 28 H 0.032 0.968 29 H 0.102 0.898 30 H 0.267 0.733 31 H 0.388 0.612 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.331 5.070 13.920 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.578 4.578 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.343 5.343 14 C 0.324 3.676 15 O -0.410 6.410 16 C -0.120 4.120 17 C -0.059 4.059 18 C -0.141 4.141 19 C -0.064 4.064 20 C -0.136 4.136 21 N 0.550 4.450 22 O -0.372 6.372 23 O -0.379 6.379 24 C -0.024 4.024 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.221 0.779 32 H 0.167 0.833 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.193 4.617 12.953 14.117 hybrid contribution 0.962 0.134 0.345 1.031 sum -2.231 4.750 13.298 14.296 Atomic orbital electron populations 1.21858 0.98279 0.98327 1.01189 1.21951 0.92644 0.99543 1.02540 1.18906 0.94494 0.89299 0.80415 0.92904 1.21138 0.90397 1.39711 1.06580 0.92078 1.24879 0.98740 0.94612 0.95281 1.69874 1.35379 1.37135 1.09271 0.86492 0.84590 0.78369 0.77574 1.20116 1.21035 1.20143 1.46493 1.13842 1.55030 1.18919 1.17868 0.83548 0.79899 0.86241 1.90801 1.51296 1.59586 1.39360 1.20419 0.93901 1.01175 0.96517 1.21943 0.99388 0.93011 0.91539 1.21174 0.95582 0.98487 0.98840 1.21199 0.92268 0.95288 0.97610 1.21016 0.85429 1.08265 0.98894 1.43589 1.02593 0.98715 1.00137 1.94583 1.47385 1.63374 1.31837 1.94512 1.81609 1.44121 1.17684 1.21154 0.96200 0.89358 0.95699 0.92964 0.94499 0.95594 0.94897 0.88018 0.92321 0.77864 0.83305 0.82984 0.82765 0.81670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -2.92 5.45 -26.74 -0.15 -3.07 16 3 C 0.27 6.31 2.24 -69.08 -0.15 6.16 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.31 8.73 -34.44 -0.30 -13.61 16 6 H 0.06 1.42 7.74 -52.49 -0.41 1.01 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.55 11.30 55.43 0.63 -22.92 16 9 Si 0.90 19.58 29.54 -169.99 -5.02 14.56 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.70 -12.88 4.97 -55.88 -0.28 -13.16 16 14 C 0.54 9.76 6.34 -12.33 -0.08 9.68 16 15 O -0.53 -11.55 13.48 5.32 0.07 -11.47 16 16 C -0.12 -1.58 5.87 -104.97 -0.62 -2.20 16 17 C -0.04 -0.39 9.54 -39.18 -0.37 -0.77 16 18 C -0.12 -0.94 10.03 -39.64 -0.40 -1.33 16 19 C -0.04 -0.41 9.55 -39.49 -0.38 -0.78 16 20 C -0.05 -0.66 6.84 -80.00 -0.55 -1.20 16 21 N 0.03 0.42 4.45 33.93 0.15 0.57 16 22 O -0.15 -2.39 18.44 -29.46 -0.54 -2.94 16 23 O -0.16 -2.28 18.44 -29.46 -0.54 -2.82 16 24 C 0.00 -0.06 9.10 -39.19 -0.36 -0.41 16 25 H 0.05 1.18 7.84 -51.93 -0.41 0.78 16 26 H 0.04 0.75 5.65 -51.93 -0.29 0.46 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 30 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.39 5.91 6.57 -40.82 -0.27 5.64 16 32 H 0.15 1.17 6.41 -52.49 -0.34 0.83 16 33 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.15 1.09 7.60 -52.49 -0.40 0.70 16 35 H 0.17 2.44 7.20 -52.48 -0.38 2.06 16 LS Contribution 304.63 15.07 4.59 4.59 Total: -1.00 -29.41 304.63 -7.67 -37.07 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -3.59 Total: 5.03 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -3.13 Total: -8.52 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.50 Total: -35.51 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -1.01 Total: -17.23 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.41 -7.67 -37.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.867 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds