Wall clock time and date at job start Tue Mar 31 2020 00:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21548 * 120.00126 * 359.97438 * 14 13 3 16 16 C 1.47854 * 119.99892 * 179.97438 * 14 13 3 17 17 C 1.39595 * 120.14151 * 359.72033 * 16 14 13 18 18 C 1.37939 * 119.84842 * 179.76317 * 17 16 14 19 19 C 1.38382 * 120.14491 * 0.52091 * 18 17 16 20 20 C 1.38338 * 120.29017 * 359.73396 * 19 18 17 21 21 N 1.48023 * 119.92343 * 179.97438 * 20 19 18 22 22 O 1.21802 * 119.99474 * 180.02562 * 21 20 19 23 23 O 1.21797 * 120.00021 * 0.02562 * 21 20 19 24 24 C 1.37971 * 120.14784 * 0.02562 * 20 19 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.07995 * 120.07477 * 0.03138 * 17 16 14 33 33 H 1.07997 * 119.92774 * 180.25764 * 18 17 16 34 34 H 1.07995 * 119.85311 * 179.76120 * 19 18 17 35 35 H 1.08006 * 120.07384 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3409 2.6326 0.4321 16 6 0.0439 3.3249 2.6306 17 6 0.9307 3.3579 3.7081 18 6 0.5612 3.9801 4.8825 19 6 -0.6894 4.5611 4.9974 20 6 -1.5749 4.5272 3.9351 21 7 -2.9108 5.1509 4.0672 22 8 -3.6916 5.1213 3.1328 23 8 -3.2292 5.6935 5.1101 24 6 -1.2160 3.9125 2.7532 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 1.9054 2.9012 3.6210 33 1 1.2479 4.0100 5.7155 34 1 -0.9752 5.0436 5.9204 35 1 -1.9081 3.8870 1.9245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:53 Heat of formation + Delta-G solvation = -37.093369 kcal Electronic energy + Delta-G solvation = -21074.668344 eV Core-core repulsion = 17654.182508 eV Total energy + Delta-G solvation = -3420.485836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.34133 -41.41570 -39.65935 -37.75217 -37.02455 -34.56380 -33.53532 -32.74597 -32.18530 -29.05421 -27.65522 -25.73259 -24.60115 -23.58041 -22.28491 -21.40492 -20.55020 -19.79397 -18.76487 -18.69757 -17.78990 -17.50112 -17.15257 -16.48084 -16.35420 -15.88907 -15.26361 -15.04408 -14.60882 -14.40174 -13.81397 -13.51614 -13.35934 -13.19865 -13.03140 -12.92836 -12.73932 -12.65259 -12.36448 -12.34010 -12.21175 -12.09819 -11.61987 -11.09559 -10.97440 -10.76725 -10.53933 -10.48030 -9.74517 -8.16530 -6.34507 -1.31830 -0.49671 0.20278 0.26034 1.47034 1.48287 1.56014 1.66825 2.21518 2.46470 2.48766 3.13761 3.36614 3.39471 3.64345 3.68174 3.82059 4.12331 4.45853 4.49882 4.53362 4.61085 4.72519 4.84701 4.90448 5.02576 5.07145 5.23364 5.36530 5.39175 5.48062 5.57550 5.75684 5.87040 6.13756 6.41338 6.71815 6.82430 7.28606 7.44005 8.88664 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030545 B = 0.003953 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.454628 B = 7081.411034 C = 7631.876961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.078 0.922 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.262 1.262 11 H -0.291 1.291 12 H -0.271 1.271 13 N -0.689 5.689 14 C 0.539 3.461 15 O -0.580 6.580 16 C -0.135 4.135 17 C -0.024 4.024 18 C -0.096 4.096 19 C -0.025 4.025 20 C -0.066 4.066 21 N 0.031 4.969 22 O -0.219 6.219 23 O -0.133 6.133 24 C -0.018 4.018 25 H 0.024 0.976 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.265 0.735 31 H 0.407 0.593 32 H 0.175 0.825 33 H 0.207 0.793 34 H 0.187 0.813 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.957 5.563 18.032 18.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.096 0.904 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.186 1.186 11 H -0.217 1.217 12 H -0.197 1.197 13 N -0.339 5.339 14 C 0.326 3.674 15 O -0.462 6.462 16 C -0.139 4.139 17 C -0.043 4.043 18 C -0.113 4.113 19 C -0.044 4.044 20 C -0.149 4.149 21 N 0.547 4.453 22 O -0.421 6.421 23 O -0.359 6.359 24 C -0.038 4.038 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.244 0.756 32 H 0.192 0.808 33 H 0.224 0.776 34 H 0.204 0.796 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.856 5.095 16.991 17.759 hybrid contribution 0.237 0.051 -0.762 0.799 sum -0.618 5.146 16.229 17.036 Atomic orbital electron populations 1.21706 0.97296 0.99223 1.00130 1.21798 0.93420 0.99092 1.01696 1.18454 0.93976 0.89191 0.80947 0.98226 1.21532 0.91049 1.39174 1.06936 0.90371 1.25766 1.03252 0.94339 0.95029 1.70045 1.37216 1.38221 1.09849 0.85427 0.79108 0.78438 0.77543 1.18609 1.21661 1.19661 1.46131 1.14667 1.55043 1.18013 1.18482 0.82574 0.78997 0.87367 1.90779 1.52553 1.61190 1.41659 1.19923 0.94994 1.03187 0.95783 1.22283 0.99295 0.91963 0.90731 1.21741 0.95193 0.95449 0.98966 1.21745 0.91765 0.93656 0.97200 1.21113 0.84986 1.09182 0.99617 1.43860 1.03206 0.98471 0.99792 1.94609 1.48768 1.66108 1.32593 1.94458 1.81670 1.42561 1.17217 1.20917 0.96175 0.90793 0.95956 0.95647 0.93957 0.93535 0.93491 0.90865 0.92616 0.75604 0.80751 0.77617 0.79599 0.84556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 8.51 71.98 0.61 -4.91 16 2 C -0.12 -5.66 5.45 30.59 0.17 -5.50 16 3 C 0.28 13.33 2.24 44.24 0.10 13.43 16 4 H 0.00 -0.01 7.58 -2.39 -0.02 -0.03 16 5 C -0.55 -26.96 8.73 25.60 0.22 -26.74 16 6 H 0.08 3.48 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -50.53 11.30 21.45 0.24 -50.29 16 9 Si 0.97 39.76 29.54 68.60 2.03 41.79 16 10 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 11 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 13 N -0.69 -25.38 4.97 -448.98 -2.23 -27.61 16 14 C 0.54 19.91 6.34 86.79 0.55 20.46 16 15 O -0.58 -26.95 13.48 -3.87 -0.05 -27.00 16 16 C -0.13 -3.55 5.87 -20.09 -0.12 -3.67 16 17 C -0.02 -0.37 9.54 22.53 0.21 -0.15 16 18 C -0.10 -0.85 10.03 22.23 0.22 -0.63 16 19 C -0.02 -0.33 9.55 22.33 0.21 -0.12 16 20 C -0.07 -1.53 6.84 36.34 0.25 -1.28 16 21 N 0.03 0.85 4.45 -46.55 -0.21 0.64 16 22 O -0.22 -7.21 18.44 18.88 0.35 -6.87 16 23 O -0.13 -3.40 18.44 18.89 0.35 -3.05 16 24 C -0.02 -0.50 9.10 22.52 0.20 -0.30 16 25 H 0.02 1.20 7.84 -2.39 -0.02 1.19 16 26 H 0.04 1.77 5.65 -2.39 -0.01 1.76 16 27 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 3.88 5.95 -2.39 -0.01 3.87 16 30 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 31 H 0.41 11.49 6.57 -92.71 -0.61 10.88 16 32 H 0.18 1.78 6.41 -2.91 -0.02 1.76 16 33 H 0.21 -0.15 8.06 -2.91 -0.02 -0.17 16 34 H 0.19 1.42 7.60 -2.91 -0.02 1.40 16 35 H 0.14 4.52 7.20 -2.91 -0.02 4.50 16 Total: -1.00 -69.89 304.63 4.09 -65.80 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.53 Total: 14.70 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 3.09 Total: -8.11 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -2.20 Total: -77.26 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: 0.64 Total: -36.92 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -69.89 4.09 -65.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.710 kcal (2) G-P(sol) polarization free energy of solvation -69.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds