Wall clock time and date at job start Tue Mar 31 2020 00:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47035 * 2 1 4 4 H 1.09005 * 109.47215 * 54.17354 * 3 2 1 5 5 C 1.50706 * 109.46999 * 174.16700 * 3 2 1 6 6 H 1.08000 * 119.99575 * 119.26005 * 5 3 2 7 7 C 1.37875 * 120.00341 * 299.25605 * 5 3 2 8 8 N 1.31515 * 120.00009 * 167.94503 * 7 5 3 9 9 Si 1.86800 * 119.99766 * 347.95049 * 7 5 3 10 10 H 1.48503 * 109.47075 * 264.55134 * 9 7 5 11 11 H 1.48500 * 109.47365 * 24.55440 * 9 7 5 12 12 H 1.48507 * 109.47009 * 144.55165 * 9 7 5 13 13 N 1.46496 * 109.47465 * 294.16921 * 3 2 1 14 14 S 1.65605 * 119.99891 * 117.26585 * 13 3 2 15 15 O 1.42105 * 106.39944 * 176.34245 * 14 13 3 16 16 O 1.42093 * 106.40063 * 309.26417 * 14 13 3 17 17 N 1.65595 * 107.21624 * 62.80470 * 14 13 3 18 18 C 1.47150 * 120.98369 * 269.71367 * 17 14 13 19 19 C 1.53712 * 108.16160 * 129.43273 * 18 17 14 20 20 O 1.42960 * 109.14874 * 52.54529 * 19 18 17 21 21 C 1.42967 * 114.16260 * 297.28860 * 20 19 18 22 22 C 1.47157 * 120.98271 * 90.00090 * 17 14 13 23 23 H 1.08997 * 109.46984 * 305.54423 * 1 2 3 24 24 H 1.09000 * 109.47313 * 65.54383 * 1 2 3 25 25 H 1.09004 * 109.47050 * 185.54965 * 1 2 3 26 26 H 1.09004 * 109.47085 * 240.00366 * 2 1 3 27 27 H 1.08999 * 109.47307 * 120.00477 * 2 1 3 28 28 H 0.96997 * 119.99519 * 179.97438 * 8 7 5 29 29 H 0.96998 * 119.99720 * 297.26528 * 13 3 2 30 30 H 1.09000 * 109.68564 * 249.21703 * 18 17 14 31 31 H 1.09000 * 109.67857 * 9.76910 * 18 17 14 32 32 H 1.09001 * 109.66025 * 292.57105 * 19 18 17 33 33 H 1.09004 * 109.48346 * 172.40398 * 19 18 17 34 34 H 1.09006 * 109.50986 * 302.65344 * 21 20 19 35 35 H 1.08997 * 109.55582 * 182.52948 * 21 20 19 36 36 H 1.08994 * 109.68158 * 350.22856 * 22 17 14 37 37 H 1.09001 * 109.68301 * 110.75033 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5939 1.9856 0.8333 5 6 3.5401 1.4449 0.1444 6 1 4.1564 1.8751 -0.6311 7 6 4.1256 0.8981 1.2665 8 7 5.4228 0.6832 1.2929 9 14 3.0763 0.4626 2.7493 10 1 3.1077 1.5824 3.7241 11 1 1.6768 0.2253 2.3129 12 1 3.6102 -0.7663 3.3897 13 7 1.6696 2.0914 -1.2601 14 16 0.6547 3.4000 -1.2505 15 8 0.5615 3.8454 -2.5967 16 8 -0.4760 3.0252 -0.4758 17 7 1.4180 4.6061 -0.4107 18 6 1.2385 4.7476 1.0429 19 6 2.6293 4.8477 1.6899 20 8 3.3758 5.8790 1.0396 21 6 3.6260 5.6350 -0.3467 22 6 2.2908 5.5718 -1.0971 23 1 -0.3633 0.5974 0.8362 24 1 -0.3634 0.4254 -0.9354 25 1 -0.3633 -1.0229 0.0994 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 5.8347 0.2988 2.0825 29 1 2.0188 1.7546 -2.1000 30 1 0.6655 5.6500 1.2560 31 1 0.7122 3.8770 1.4343 32 1 3.1524 3.8973 1.5837 33 1 2.5218 5.0878 2.7477 34 1 4.1528 4.6875 -0.4603 35 1 4.2352 6.4415 -0.7549 36 1 2.4616 5.2473 -2.1235 37 1 1.8217 6.5557 -1.0964 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:12 Heat of formation + Delta-G solvation = -140.587696 kcal Electronic energy + Delta-G solvation = -22129.352155 eV Core-core repulsion = 18839.822420 eV Total energy + Delta-G solvation = -3289.529736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.08307 -38.51664 -37.79529 -36.94351 -35.74721 -34.26120 -32.53293 -32.31094 -29.04001 -28.00575 -25.16344 -24.47613 -22.47917 -22.20209 -20.42232 -19.43719 -18.77314 -18.15238 -17.59614 -17.10377 -16.64277 -16.27635 -16.02270 -15.81770 -15.43743 -15.35734 -14.99115 -14.58793 -14.02328 -13.77687 -13.55135 -13.30807 -13.27198 -13.12188 -13.05195 -12.73556 -12.71939 -12.56958 -12.37283 -12.26515 -11.75991 -11.65976 -11.42178 -11.20766 -11.03826 -10.58398 -10.12654 -9.80948 -8.27829 -6.29295 -0.36920 1.35101 1.44129 1.48710 1.86238 2.36084 2.57830 2.94562 3.06478 3.31941 3.69532 3.88856 4.17615 4.25531 4.26426 4.31521 4.37206 4.46573 4.48879 4.64266 4.65779 4.70156 4.89893 4.95932 5.08514 5.14003 5.17814 5.19587 5.43574 5.49394 5.54612 5.63171 6.18615 6.28807 6.35653 6.75648 7.35243 8.87503 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.010723 C = 0.007921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.973593 B = 2610.595664 C = 3534.111258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.264 3.736 4 H 0.038 0.962 5 C -0.520 4.520 6 H 0.046 0.954 7 C 0.034 3.966 8 N -0.934 5.934 9 Si 0.890 3.110 10 H -0.269 1.269 11 H -0.213 1.213 12 H -0.290 1.290 13 N -1.105 6.105 14 S 2.800 3.200 15 O -1.008 7.008 16 O -0.995 6.995 17 N -1.008 6.008 18 C 0.090 3.910 19 C 0.040 3.960 20 O -0.389 6.389 21 C 0.046 3.954 22 C 0.092 3.908 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.265 0.735 29 H 0.415 0.585 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.120 0.880 34 H 0.040 0.960 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.719 7.210 -0.781 10.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.157 3.843 4 H 0.056 0.944 5 C -0.559 4.559 6 H 0.064 0.936 7 C -0.166 4.166 8 N -0.573 5.573 9 Si 0.714 3.286 10 H -0.195 1.195 11 H -0.135 1.135 12 H -0.216 1.216 13 N -0.866 5.866 14 S 2.809 3.191 15 O -0.993 6.993 16 O -0.979 6.979 17 N -0.849 5.849 18 C -0.035 4.035 19 C -0.038 4.038 20 O -0.307 6.307 21 C -0.032 4.032 22 C -0.034 4.034 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.249 0.751 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.137 0.863 34 H 0.059 0.941 35 H 0.146 0.854 36 H 0.115 0.885 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.482 7.431 -0.821 11.307 hybrid contribution 0.770 -0.924 0.388 1.263 sum -7.712 6.508 -0.433 10.100 Atomic orbital electron populations 1.21792 0.95579 1.01427 1.01586 1.22360 0.95472 0.98441 1.01855 1.18592 0.93753 0.90637 0.81347 0.94417 1.21312 0.90718 1.38679 1.05183 0.93557 1.25533 0.95484 0.94589 1.01006 1.70060 1.12301 1.44850 1.30087 0.86849 0.82867 0.78421 0.80510 1.19501 1.13540 1.21612 1.55587 1.67971 1.47630 1.15384 1.01220 0.73550 0.72388 0.71985 1.93537 1.87253 1.81716 1.36777 1.93562 1.49067 1.82891 1.72370 1.58037 1.63927 1.45246 1.17732 1.22260 0.98188 1.04381 0.78719 1.23157 0.91081 0.91855 0.97750 1.87849 1.74510 1.45172 1.23165 1.23047 0.95928 1.02610 0.81637 1.22175 0.90967 0.93820 0.96397 0.93264 0.93276 0.91850 0.91929 0.92186 0.92624 0.75114 0.88236 0.88966 0.93433 0.86252 0.94111 0.85434 0.88456 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 9.18 71.98 0.66 -4.31 16 2 C -0.14 -5.48 4.72 30.59 0.14 -5.33 16 3 C 0.26 10.77 1.85 44.25 0.08 10.85 16 4 H 0.04 1.54 5.72 -2.38 -0.01 1.52 16 5 C -0.52 -25.58 9.21 25.60 0.24 -25.35 16 6 H 0.05 2.55 8.06 -2.91 -0.02 2.52 16 7 C 0.03 1.74 5.36 84.65 0.45 2.19 16 8 N -0.93 -53.31 13.96 21.45 0.30 -53.01 16 9 Si 0.89 38.22 25.68 68.60 1.76 39.98 16 10 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.21 -8.20 5.12 99.48 0.51 -7.70 16 12 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 13 N -1.11 -39.90 5.01 -172.52 -0.87 -40.77 16 14 S 2.80 96.30 5.98 -56.49 -0.34 95.96 16 15 O -1.01 -37.32 16.94 -128.00 -2.17 -39.49 16 16 O -1.00 -37.16 15.80 -128.00 -2.02 -39.19 16 17 N -1.01 -30.85 3.39 -510.86 -1.73 -32.58 16 18 C 0.09 2.55 6.33 86.50 0.55 3.09 16 19 C 0.04 1.22 7.00 72.22 0.51 1.72 16 20 O -0.39 -12.09 10.74 -148.98 -1.60 -13.69 16 21 C 0.05 1.29 6.98 72.08 0.50 1.79 16 22 C 0.09 2.42 6.57 86.35 0.57 2.98 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.05 1.63 7.66 -2.39 -0.02 1.61 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 27 H 0.06 2.40 4.11 -2.39 -0.01 2.39 16 28 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.42 13.96 8.96 -96.74 -0.87 13.09 16 30 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.09 2.66 6.46 -2.39 -0.02 2.64 16 32 H 0.05 1.79 8.01 -2.39 -0.02 1.77 16 33 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.10 2.49 7.25 -2.39 -0.02 2.47 16 37 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -63.47 303.72 -2.95 -66.42 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.01 Total: 28.72 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 3.70 Total: -12.36 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -2.30 Total: -126.36 kcal Atomic # 8 Polarization: -86.57 SS G_CDS: -5.79 Total: -92.36 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 1.76 Total: 39.98 kcal Atomic # 16 Polarization: 96.30 SS G_CDS: -0.34 Total: 95.96 kcal Total: -63.47 -2.95 -66.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.169 kcal (2) G-P(sol) polarization free energy of solvation -63.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds